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authIdHal_s : hugues-roest-crollius
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An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication

Elise Parey , Alexandra Louis , Jérôme Montfort , Yann Guiguen , Hugues Roest Crollius , et al.
Genome Research, 2022, 32 (9), pp.1685 - 1697. ⟨10.1101/gr.276953.122⟩
Journal articles hal-03876769v1
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Insights into vertebrate whole-genome duplications from the rainbow trout genome

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard , et al.
22. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE), Jun 2014, Puerto Rico, Puerto Rico. 2014, Smbe 2014. Molecular Evolution: From Genome Technology to the History of Life
Conference poster hal-01194063v1
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Evolution is not Uniform Along Coding Sequences

Raphaël Bricout , Dominique Weil , David Stroebel , Auguste Genovesio , Hugues Roest Crollius
Molecular Biology and Evolution, 2023, 40 (3), ⟨10.1093/molbev/msad042⟩
Journal articles hal-04051951v1
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Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors

Nga thi thuy Nguyen , Pierre Vincens , Jean François Dufayard , Hugues Roest crollius , Alexandra Louis
Nucleic Acids Research, 2022, 50 (D1), pp.D1025-D1031. ⟨10.1093/nar/gkab1091⟩
Journal articles hal-03438462v1

Enhancer–gene maps in the human and zebrafish genomes using evolutionary linkage conservation

Yves Clément , Patrick Torbey , Pascale Gilardi-Hebenstreit , Hugues Roest Crollius
Nucleic Acids Research, 2020, 48 (5), pp.2357-2371. ⟨10.1093/nar/gkz1199⟩
Journal articles hal-03455900v1
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Classification of non-coding variants with high pathogenic impact

Lambert Moyon , Camille Berthelot , Alexandra Louis , Nga Thi Thuy Nguyen , Hugues Roest Crollius
PLoS Genetics, 2022, 18 (4), pp.e1010191. ⟨10.1371/journal.pgen.1010191⟩
Journal articles hal-03698847v1
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Directed acyclic coloured multigraphs for expert eukaryotic gene annotation

Sarah Djebali , Franck Delaplace , Hugues Roest Crollius
Journée Ouverte Biologie Informatique Mathématiques (JOBIM 2005), 2005, Paris, France
Conference papers hal-00339795v1
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Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.

Brian P. Cusack , Peter F. Arndt , L. Duret , Hugues Roest Crollius
PLoS Genetics, 2011, 7 (10), pp.e1002276. ⟨10.1371/journal.pgen.1002276⟩
Journal articles inserm-00711772v1
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Conserved Small Nucleotidic Elements at the Origin of Concerted piRNA Biogenesis from Genes and lncRNAs

Silke Jensen , Emilie Brasset , Elise Parey , Hugues Roest Crollius , Igor Sharakhov , et al.
Cells, 2020, 9 (6), pp.1491. ⟨10.3390/cells9061491⟩
Journal articles hal-02935810v1
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Signaling Switch of the Axon Guidance Receptor Robo3 during Vertebrate Evolution

Pavol Zelina , Heike Blockus , Yvrick Zagar , Amélie Péres , François Friocourt , et al.
Neuron, 2014, 84 (6), pp.1258-1272. ⟨10.1016/j.neuron.2014.11.004⟩
Journal articles hal-01102724v1

Genomicus: five genome browsers for comparative genomics in eukaryota

Alexandra Louis , Matthieu Muffato , Hugues Roest Crollius
Nucleic Acids Research, 2012, 41 (D1), pp.D700-D705. ⟨10.1093/nar/gks1156⟩
Journal articles hal-03352666v1

Genomicus update 2015: KaryoView and MatrixView provide a genome-wide perspective to multispecies comparative genomics

Alexandra Louis , Nga thi thuy Nguyen , Matthieu Muffato , Hugues Roest crollius
Nucleic Acids Research, 2015, 43 (D1), pp.D682-D689. ⟨10.1093/nar/gku1112⟩
Journal articles hal-03352660v1
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On the importance of evolutionary constraint for regulatory sequence identification

François Giudicelli , Hugues Roest Crollius
Briefings in Functional Genomics and Proteomics, 2021, 20 (6), pp.361-369. ⟨10.1093/bfgp/elab015⟩
Journal articles hal-03457553v1
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Amphioxus functional genomics and the origins of vertebrate gene regulation

Ferdinand Marletaz , Panos N. Firbas , Ignacio Maeso , Juan J. Tena , Ozren Bogdanovic , et al.
Nature, 2018, 564 (7734), pp.64-70. ⟨10.1038/s41586-018-0734-6⟩
Journal articles hal-02000511v1
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Erratum to :"Understanding Brassicaceae evolution through ancestral genome reconstruction" (vol 16, 262, 2015)

Florent Murat , Alexandra Louis , Florian Maumus , Alix Armero , Richard Cooke , et al.
Genome Biology, 2016, 17 (64), ⟨10.1186/s13059-016-0887-2⟩
Journal articles hal-02630062v1
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GC content shapes mRNA storage and decay in human cells

Maïté Courel , Yves Clément , Clémentine Bossevain , Dominika Foretek , Olivia Vidal Cruchez , et al.
eLife, 2019, 8, pp.e49708. ⟨10.7554/elife.49708⟩
Journal articles hal-03457618v1
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Enhancer–gene maps in the human and zebrafish genomes using evolutionary linkage conservation

Yves Clément , Patrick Torbey , Pascale Gilardi-Hebenstreit , Hugues Roest Crollius
Nucleic Acids Research, 2020, 48 (5), pp.2357-2371. ⟨10.1093/nar/gkz1199⟩
Journal articles hal-03026692v1
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Nucleosome rotational setting is associated with transcriptional regulation in promoters of tissue-specific human genes.

Charles Hebert , Hugues Roest Crollius
Genome Biology, 2010, 11 (5), pp.R51. ⟨10.1186/gb-2010-11-5-r51⟩
Journal articles inserm-00663747v1

Synteny-guided resolution of gene trees clarifies the functional impact of whole-genome duplications

Elise Parey , Alexandra Louis , Cédric Cabau , Yann Guiguen , Hugues Roest Crollius , et al.
Molecular Biology and Evolution, 2020, 37 (11), pp.3324-3337. ⟨10.1093/molbev/msaa149⟩
Journal articles hal-03038540v1
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ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates

Justine Dardaillon , Delphine Dauga , Paul Simion , Emmanuel Faure , Takeshi Onuma , et al.
Nucleic Acids Research, 2019, ⟨10.1093/nar/gkz955⟩
Journal articles hal-02415680v1
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard , et al.
Nature Communications, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩
Journal articles hal-01193812v1
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Early born neurons are abnormally positioned in the doublecortin knockout hippocampus

Reham Khalaf-Nazzal , Melissa A. Stouffer , Robert Olaso , Leila Muresan , Audrey Roumegous , et al.
Human Molecular Genetics, 2017, 26 (1), pp.90-108. ⟨10.1093/hmg/ddw370⟩
Journal articles hal-01512718v1
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques , et al.
2023
Preprints, Working Papers, ... hal-03765882v1