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Plasmodium copy number variation scan: gene copy numbers evaluation in haploid genomes.

Johann Beghain , Anne-Claire Langlois , Eric Legrand , Laura Grange , Nimol Khim , et al.
Malaria Journal, 2016, 15 (1), pp.206. ⟨10.1186/s12936-016-1258-x⟩
Journal articles pasteur-01303621v1
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Chloroquine clinical failures in P. falciparum malaria are associated with mutant Pfmdr-1, not Pfcrt in Madagascar.

Valérie Andriantsoanirina , Arsène Ratsimbasoa , Christiane Bouchier , Magali Tichit , Martial Jahevitra , et al.
PLoS ONE, 2010, 5 (10), pp.e13281. ⟨10.1371/journal.pone.0013281⟩
Journal articles pasteur-00557026v1
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Genome Sequence of "Candidatus Arthromitus" sp. Strain SFB-Mouse-NL, a Commensal Bacterium with a Key Role in Postnatal Maturation of Gut Immune Functions.

Alexandre Bolotine , Tomas de Wouters , Pamela Schnupf , Christiane Bouchier , Valentin Loux , et al.
Genome Announcements, 2014, 2 (4), ⟨10.1128/genomeA.00705-14⟩
Journal articles hal-01204391v1
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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Marie Touchon , Claire Hoede , Olivier Tenaillon , Valérie Barbe , Simon Baeriswyl , et al.
PLoS Genetics, 2009, 5 (1), pp.e1000344. ⟨10.1371/journal.pgen.1000344⟩
Journal articles hal-00390293v1
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Demography and Intercontinental Spread of the USA300 Community-Acquired Methicillin-Resistant Staphylococcus aureus Lineage.

Philippe Glaser , Patrícia Martins-Simões , Adrien Villain , Maxime Barbier , Anne Tristan , et al.
mBio, 2016, 7 (1), pp.e02183-15. ⟨10.1128/mBio.02183-15⟩
Journal articles hal-01312831v1
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Pks5-recombination-mediated surface remodelling in Mycobacterium tuberculosis emergence

Eva C. Boritsch , Wafa Frigui , Alessandro Cascioferro , Wladimir Malaga , Gilles Etienne , et al.
Nature Microbiology, 2016, 1 (février 2016), ⟨10.1038/nmicrobiol.2015.19⟩
Journal articles pasteur-01265519v1
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Fuse or die: how to survive the loss of Dam in Vibrio cholerae

Marie-Eve Val , Sean Patrick Kennedy , Alfonso Soler-Bistué , Valérie Barbe , Christiane Bouchier , et al.
Molecular Microbiology, 2014, 91 (4), pp.665 - 678. ⟨10.1111/mmi.12483⟩
Journal articles inserm-01285641v1
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Pathogenomic analyses of Mycobacterium microti, an ESX-1-deleted member of the Mycobacterium tuberculosis complex causing disease in various hosts

Mickael Orgeur , Wafa Frigui , Alexandre Pawlik , Simon Clark , Ann Williams , et al.
Microbial Genomics, 2021, 7 (2), ⟨10.1099/mgen.0.000505⟩
Journal articles pasteur-03255655v1
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Dynamics of extended-spectrum beta-lactamase-producing Enterobacterales colonization in long-term carriers following travel abroad

Laurence Armand-Lefèvre , Emilie Rondinaud , Dimitri Desvillechabrol , Jimmy Mullaert , Olivier Clermont , et al.
Microbial Genomics, 2021, 7 (7), pp.000576. ⟨10.1099/mgen.0.000576⟩
Journal articles pasteur-03509051v1
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DNA minicircles clarify the specific role of DNA structure on retroviral integration

Marc Pasi , Damien Mornico , Stevenn Volant , Anna Juchet , Julien Batisse , et al.
Nucleic Acids Research, 2016, 44 (16), pp.7830 - 7847. ⟨10.1093/nar/gkw651⟩
Journal articles pasteur-01416869v1
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Unexpected Genomic and Phenotypic Diversity of Mycobacterium africanum Lineage 5 Affects Drug Resistance, Protein Secretion, and Immunogenicity

Louis S. Ates , Anzaan Dippenaar , Fadel Sayes , Alexandre Pawlik , Christiane Bouchier , et al.
Genome Biology and Evolution, 2018, 10 (8), pp.1858 - 1874. ⟨10.1093/gbe/evy145⟩
Journal articles hal-01884644v1
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Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline

Violette da Cunha , Mark R. Davies , Pierre-Emmanuel Douarre , Isabelle Rosinski-Chupin , Immaculada Margarit , et al.
Nature Communications, 2014, 5, pp.Article 4544. ⟨10.1038/ncomms5544⟩
Journal articles pasteur-01299769v1
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A surrogate marker of piperaquine-resistant Plasmodium falciparum malaria: a phenotype–genotype association study

Benoit Witkowski , Valentine Duru , Nimol Khim , Leila S Ross , Benjamin Saintpierre , et al.
The Lancet Infectious Diseases, 2016, 17 (2), pp.174-183. ⟨10.1016/S1473-3099(16)30415-7⟩
Journal articles pasteur-01400955v1
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Sequanix: a dynamic graphical interface for Snakemake workflows

Dimitri Desvillechabrol , Rachel Legendre , Claire Rioualen , Christiane Bouchier , Jacques van Helden , et al.
Bioinformatics, 2018, 34 (11), pp.1934 - 1936. ⟨10.1093/bioinformatics/bty034⟩
Journal articles hal-01874933v1
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Analysis of the Legionella longbeachae Genome and Transcriptome Uncovers Unique Strategies to Cause Legionnaires' Disease

Christel Cazalet , Laura Gomez-Valero , Christophe Rusniok , Mariella Lomma , Delphine Dervins-Ravault , et al.
PLoS Genetics, 2010, 6 (2), pp.e1000851. ⟨10.1371/journal.pgen.1000851⟩
Journal articles hal-03020210v1
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Genomic characterization of Sebokele virus 1 (SEBV1) reveals a new candidate species among the genus Parechovirus.

Marie-Line Joffret , Christiane Bouchier , Marc Grandadam , Hervé Zeller , Corinne Maufrais , et al.
Journal of General Virology, 2013, 94 (Pt_7), pp.1547-53. ⟨10.1099/vir.0.053157-0⟩
Journal articles pasteur-01435337v1
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Unraveling the genetic diversity and phylogeny of Leishmania RNA virus 1 strains of infected Leishmania isolates circulating in French Guiana

Sourakhata Tirera , Marine Ginouvès , Damien Donato , Ignacio S. Caballero , Christiane Bouchier , et al.
PLoS Neglected Tropical Diseases, 2017, 11 (7), pp.e0005764. ⟨10.1371/journal.pntd.0005764⟩
Journal articles pasteur-01583523v1
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Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications

Guillaume Sapriel , Julie Konjek , Mickael Orgeur , Laurent Bouri , Lise Frézal , et al.
BMC Genomics, 2016, 17 (1), pp.118. ⟨10.1186/s12864-016-2448-1⟩
Journal articles hal-01284527v1