{"text_format":"2","workbook":"xlsx","n_sheets":2,"sheets":["readme","Table S17A"],"not_rendered":{"charts":0,"images":0,"macros":0,"external_links":0,"defined_names":1,"comments":0,"pivot_tables":0},"unopened":[],"bounds":{"document_bytes":16777216,"sheet_cells":100000,"run_cost":"one","rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0,"cell_chars":16384,"cell_head_chars":4096},"cells_cut":0,"cells_raw":0,"read":"whole","date_system":"1900"}

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["Column headers","Description"]
["#","Automatic number"]
["#Sample_ID","Sample ID"]
["Chr:Max_Start-Max_End","chr:start-end (hg18 coordinates); CNVs detected in the same individual by more than one algorithm were merged with the outside probes used as boundaries"]
["CNV_type","0 = homozygous deletion\n1 = heterozygous deletion\n3 = duplication\nloss|mosaic = mosaic deletion"]
["Cytoband","Cytoband"]
["RefSeq-with-10kb-flanking","Genes intersected by the CNV, when a 10 kb flanking window on either side of the gene is considered"]
["RefSeq-exonic","Genes intersected by the CNV, when only exons are considered"]
["Length","Length of the CNV"]
["Stringent_vs_non-stringent","Tag identifying stringent vs. unstringent CNV calls:\n0 = unstringent: called with at least one algorithm, but not meeting criteria for stringent, as defined below\n1 = stringent: called by iPattern and one of the other two algorithms, QuantiSNP (QSNP) or PennCNV (PCN)"]
["QSNP_CN","QuantiSNP copy number state (each entry corresponds to a CNV call; calls where merged when there were multiple consecutive calls)"]
["PCN_state","PennCNV copy number state (each entry corresponds to a CNV call; calls where merged when there were multiple consecutive calls)"]
["SNPs|%hetero|%homo|%nc|genotypes","Number of SNP probes | % of heterozygous calls | % of homozygous calls | % of no calls | genotypes"]
["#_Ilmn1M_probes","Number of array probes within CNV"]
["Gender_Est","Gender estimated from genotypes (M, male; F, female)"]
["DNA_source","Source of DNA (B, blood; L, cell line; BC, buccal swab; U, unknown)"]
["Ancestry_Est","Ancestry estimated from genotypes (European, other)"]
["Family_type","MPX = multiplex\nSPX = simplex\nUNK = unknown"]
["Stage#","Stage 1 = Pinto et al. Nature 2010; stage 2 = new cases; the combined set of stage 1 and stage 2 was analysed for this study"]
["F_Category","Paternal as called by the algorithms; legend for tags:\nPAT = inherited from the father\nlong = proband CNV more than twice the length of the parent CNV\nshort = proband CNV less than half the length of the parent CNV\ngain_loss = CNV is a gain in the proband and loss in the parent or vice versa\nF_NA = Father data not available (sample not genotyped or failed QC)"]
["M_Category","Maternal as called by the algorithms; legend for additional tags:\nMAT = inherited from the mother\nM_NA = Mother data not available (sample not genotyped or failed QC)"]
["Category","Union of the inheritance information; legend for additional tags:\np_denovo = potential de novo\nboth = called in both parents\none_parent = CNV calls available for only one of the parents\nno_parent = no parental CNV calls available\nmisc = miscellaneous tags in 'F_Category' and 'M_Category' that do not allow the determination of inheritance based on the available information"]
["Category+additional-evidence","Same as above plus additional information, including genotypes, visualization by plotting and experimental validation; legend for additional tags:\ndenovo = confirmed de novo\nnot-MAT = not inherited from mother\nnot-PAT = not inherited from father"]
["Final_Category","Final inheritance; legend for additional tags:\nboth/either = called in both parents; CNV could be transmitted to the child from both or either parent"]
["Experimental_validated","CNV with experimental validation (see Table S17C for details about all experimentally validated CNVs in probands)"]
[]
["Note that samples with large chromosome abnormalities (>7.5 Mb) were excluded. A list of chromosome abnormalities detected in probands can be found in Table S1C."]

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["#","#Sample_ID","Chr:Max_Start-Max_End","CNV_type","Cytoband","RefSeq-with-10kb-flanking","RefSeq-exonic","Length","Stringent_vs_non-stringent","QSNP_CN","PCN_state","SNPs|%hetero|%homo|%nc|genotypes","#_Ilmn1M_probes","Gender_Est","DNA_source","Ancestry_Est","Family_type","Stage#","F_Category","M_Category","Category","Category+additional-evidence","Final_Category","Experimental_validated"]
[1,"1020_4","chr1:167493526-167507362",1,"1q24.2","NME7",null,13837,1,1,2,"7|0.00|100.00|0.00|*******",3,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[2,"1020_4","chr1:246806139-246882182",1,"1q44","OR2T10;OR2T11;OR2T27;OR2T34;OR2T35","OR2T10;OR2T11;OR2T27;OR2T35",76044,1,1,2,"22|0.00|100.00|0.00|**********************",20,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[3,"1020_4","chr3:4110452-4145874",1,"3p26.2",null,null,35423,1,1,2,"21|0.00|95.24|4.76|********************#",21,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[4,"1020_4","chr3:89485137-89499861",1,"3p11.1","EPHA3",null,14725,1,1,2,"7|0.00|100.00|0.00|*******",7,"M","L","European","MPX","stage1","PAT","MAT","both","both","both/either"]
[5,"1020_4","chr3:113585830-113596024",1,"3q13.2",null,null,10195,1,1,2,"10|0.00|100.00|0.00|**********",10,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[6,"1020_4","chr4:34802932-35676439",3,"4p14,4p15.1",null,null,873508,1,3,5,"215|19.53|61.40|19.07|**#*..#******************#****#.*****#****.#****#*****..#..#*.*#*#*****#.**##****..**#*#.*#*.#..##*.#..##..##***.**********#****************.**.*.*#..***.***#**#**.**#*.**#.*.*#..*..*#**.#*#**#**#**.***#.***.*#.*##.",262,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[7,"1020_4","chr5:155410444-155421495",1,"5q33.2",null,null,11052,1,1,2,"7|0.00|100.00|0.00|*******",7,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[8,"1020_4","chr6:29959422-30009547",1,"6p21.33","HCG2P7;HCG4B;HLA-H","HCG2P7;HCG4B;HLA-H",50126,1,1,2,"70|0.00|51.43|48.57|**####*##******###*#**#*###*#*#**####**#***##*#***#*#***#*#**##*###*#*",69,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[9,"1020_4","chr6:35606076-35673400",3,"6p21.31","FKBP5","FKBP5",67325,1,3,5,"30|23.33|53.33|23.33|##*#**###.*.*****#*.*..***.**.",35,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[10,"1020_4","chr6:79029649-79090197",1,"6q14.1",null,null,60549,1,1,2,"33|0.00|100.00|0.00|*********************************",37,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[11,"1020_4","chr8:39351896-39497557",1,"8p11.23","ADAM3A;ADAM5P","ADAM3A;ADAM5P",145662,1,0,1,"22|0.00|0.00|100.00|######################",31,"M","L","European","MPX","stage1","PAT","MAT","both","both","both/either"]
[12,"1020_4","chr11:7774010-7785071",1,"11p15.4","OR5P2","OR5P2",11062,1,1,2,"7|0.00|100.00|0.00|*******",8,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[13,"1020_4","chr11:55124465-55209499",1,"11q11","OR4C11;OR4C6;OR4P4;OR4S2","OR4C11;OR4C6;OR4P4;OR4S2",85035,1,0,1,"37|0.00|10.81|89.19|########*###################**###*###",49,"M","L","European","MPX","stage1","PAT","MAT","both","both","both/either"]
[14,"1020_4","chr11:107158291-107175438",3,"11q22.3","SLC35F2","SLC35F2",17148,1,3,5,"9|66.67|33.33|0.00|*..*...*.",12,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[15,"1020_4","chr15:32459510-32625184",1,"15q14","GOLGA8A;GOLGA8B;MIR1233-1;MIR1233-2","GOLGA8A;GOLGA8B;MIR1233-1;MIR1233-2",165675,1,1,2,"24|0.00|75.00|25.00|#*#*******#******#***##*",36,"M","L","European","MPX","stage1","PAT","MAT","both","both","both/either"]
[16,"1020_4","chr15:32717247-32769676",1,"15q14",null,null,52430,1,1,2,"30|3.33|90.00|6.67|****.***************#*****#***",31,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[17,"1020_4","chr18:1898848-1970668",1,"18p11.32",null,null,71821,1,1,2,"43|0.00|90.70|9.30|**#**#**************#*******#**************",48,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[18,"1030_3","chr2:4191253-4200019",1,"2p25.3",null,null,8767,1,1,2,"7|0.00|100.00|0.00|*******",7,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[19,"1030_3","chr2:242506744-242710183",1,"2q37.3","LOC728323","LOC728323",203440,1,1,2,"47|0.00|93.62|6.38|********************************#*******#**#***",60,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[20,"1030_3","chr3:37954886-37961253",1,"3p22.2","CTDSPL",null,6368,1,1,2,"6|0.00|100.00|0.00|******",6,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[21,"1030_3","chr4:34456032-34499424",1,"4p15.1",null,null,43393,1,1,2,"6|0.00|66.67|33.33|#**#**",5,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[22,"1030_3","chr4:64378106-64392223",1,"4q13.1",null,null,14118,1,0,1,"8|0.00|0.00|100.00|########",7,"M","L","European","MPX","stage1","PAT","MAT","both","both","both/either"]
[23,"1030_3","chr5:9955340-9977497",1,"5p15.2","LOC285692","LOC285692",22158,1,1,2,"16|0.00|93.75|6.25|*************#**",16,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[24,"1030_3","chr6:79029649-79090197",1,"6q14.1",null,null,60549,1,1,2,"33|0.00|100.00|0.00|*********************************",37,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[25,"1030_3","chr7:64316996-64593616",1,"7q11.21","INTS4L1;ZNF92","INTS4L1;ZNF92",276621,1,1,2,"95|1.05|94.74|4.21|#******#*********************.*****************************##**********************************",114,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[26,"1030_3","chr8:15446378-15455979",1,"8p22","TUSC3",null,9602,1,1,2,"10|0.00|90.00|10.00|******#***",10,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[27,"1030_3","chr8:137751666-137926509",1,"8q24.23",null,null,174844,1,1,2,"121|0.00|96.69|3.31|**********#***************************************************#*******#******************************************#*******",120,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[28,"1030_3","chr10:20890630-20896007",1,"10p12.31",null,null,5378,1,1,2,"9|0.00|100.00|0.00|*********",11,"M","L","European","MPX","stage1","PAT","MAT","both","both","both/either"]
[29,"1030_3","chr10:56265896-56361311",1,"10q21.1",null,null,95416,1,1,2,"39|2.56|92.31|5.13|*********************#.***#************",39,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[30,"1030_3","chr12:2115897-2127756",1,"12p13.33","CACNA1C",null,11860,1,1,2,"9|0.00|100.00|0.00|*********",10,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[31,"1030_3","chr12:7877830-8014573",3,"12p13.31","SLC2A14;SLC2A3","SLC2A14;SLC2A3",136744,1,3,5,"46|34.78|56.52|8.70|**#.*.*.#**.*.**.******..#******.*...*...**#*.",57,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[32,"1030_3","chr12:9526879-9616735",1,"12p13.31",null,null,89857,1,1,2,"10|0.00|40.00|60.00|#**###*#*#",9,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[33,"1030_3","chr12:11407199-11436086",1,"12p13.2","PRB1;PRB2","PRB2",28888,1,1,2,"6|0.00|66.67|33.33|#****#",4,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[34,"1030_3","chr14:40679974-40738084",1,"14q21.1",null,null,58111,1,1,2,"6|0.00|100.00|0.00|******",13,"M","L","European","MPX","stage1","PAT","MAT","both","both","both/either"]
[35,"1030_3","chr14:85357100-85379917",1,"14q31.3",null,null,22818,1,1,2,"8|0.00|100.00|0.00|********",9,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[36,"1030_3","chr15:95616714-95633191",1,"15q26.2",null,null,16478,1,1,2,"9|0.00|100.00|0.00|*********",10,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[37,"1030_3","chr16:34332760-34602723",3,"16p11.1,16p11.2","LOC100130700;LOC146481;LOC283914","LOC100130700;LOC146481;LOC283914",269964,1,3,5,"47|2.13|93.62|4.26|*#****.**************#*************************",62,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[38,"1030_3","chr18:64897188-64906488",1,"18q22.1,18q22.2",null,null,9301,1,1,2,"16|0.00|100.00|0.00|****************",15,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[39,"1030_3","chr21:18979790-19000295",3,"21q21.1",null,null,20506,1,3,5,"10|20.00|70.00|10.00|*.**#**.**",13,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[40,"1030_3","chr22:37693776-37711772",1,"22q13.1","APOBEC3A;APOBEC3B","APOBEC3B",17997,1,1,2,"8|0.00|87.50|12.50|*******#",6,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[41,"1033_4","chr1:10292133-10307026",1,"1p36.22","KIF1B","KIF1B",14894,1,1,2,"6|0.00|100.00|0.00|******",9,"M","L","other","MPX","stage1","F_NA","-","one_parent","one_parent","one_parent"]
[42,"1033_4","chr1:153452575-153470634",3,"1q22","GBA;GBAP1","GBAP1",18060,1,4,5,"12|0.00|91.67|8.33|***#********",12,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[43,"1033_4","chr1:194989670-195087200",1,"1q31.3","CFH;CFHR1;CFHR3","CFHR1;CFHR3",97531,1,1,2,"16|6.25|62.50|31.25|*##***###*****.*",26,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[44,"1033_4","chr1:246806139-246882811",1,"1q44","OR2T10;OR2T11;OR2T27;OR2T34;OR2T35","OR2T10;OR2T11;OR2T27;OR2T35",76673,1,1,2,"23|0.00|95.65|4.35|**********************#",21,"M","L","other","MPX","stage1","F_NA","-","one_parent","one_parent","one_parent"]
[45,"1033_4","chr2:180123158-180129913",1,"2q31.2","ZNF385B",null,6756,1,0,1,"5|0.00|20.00|80.00|####*",6,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[46,"1033_4","chr2:203004035-203020242",1,"2q33.1","BMPR2",null,16208,1,1,2,"8|0.00|100.00|0.00|********",10,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[47,"1033_4","chr3:46771793-46819251",1,"3p21.31",null,null,47459,1,1,2,"8|0.00|100.00|0.00|********",13,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[48,"1033_4","chr3:75502426-75719139",1,"3p12.3","FAM86DP","FAM86DP",216714,1,1,"-","28|0.00|71.43|28.57|***#*************#**##*###*#",37,"M","L","other","MPX","stage1","F_NA","-","one_parent","one_parent","one_parent"]
[49,"1033_4","chr3:101817778-101926422",3,"3q12.2","GPR128;TFG","GPR128;TFG",108645,1,3,5,"40|17.50|70.00|12.50|**..***#*#*******.*.*******.#***.#**.**#",42,"M","L","other","MPX","stage1","F_NA","-","one_parent","one_parent","one_parent"]
[50,"1033_4","chr4:69049039-69186276",3,"4q13.2","UGT2B17","UGT2B17",137238,1,3,5,"18|16.67|50.00|33.33|*#*#.****#**#.*#.#",38,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[51,"1033_4","chr4:120228595-120334827",3,"4q26","MYOZ2","MYOZ2",106233,1,3,5,"41|0.00|100.00|0.00|*****************************************",53,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[52,"1033_4","chr5:175270342-175561995",3,"5q35.2","FAM153B;LOC643201;THOC3","FAM153B;LOC643201;THOC3",291654,1,3,5,"53|9.43|58.49|32.08|##***###**#**#####*###*#.*********.*.****#*.**.***#**",76,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[53,"1033_4","chr6:78933639-78959813",1,"6q14.1",null,null,26175,1,1,2,"8|0.00|87.50|12.50|******#*",8,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[54,"1033_4","chr6:79029649-79090197",1,"6q14.1",null,null,60549,1,1,2,"33|0.00|100.00|0.00|*********************************",37,"M","L","other","MPX","stage1","F_NA","-","one_parent","one_parent","one_parent"]
[55,"1033_4","chr7:110794016-110953401",1,"7q31.1","IMMP2L","IMMP2L",159386,1,1,2,"40|0.00|97.50|2.50|****************#***********************",42,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[56,"1033_4","chr8:7157150-7947780",3,"8p23.1","DEFB103A;DEFB103B;DEFB104A;DEFB104B;DEFB105A;DEFB105B;DEFB106A;DEFB106B;DEFB107A;DEFB107B;DEFB109P1B;DEFB4A;DEFB4B;FAM66B;FAM66E;FAM90A10;FAM90A13;FAM90A14;FAM90A18;FAM90A19;FAM90A7;FAM90A8;FAM90A9;LOC100132396;SPAG11A;SPAG11B;ZNF705G","DEFB103A;DEFB103B;DEFB104A;DEFB104B;DEFB105A;DEFB105B;DEFB106A;DEFB106B;DEFB107A;DEFB107B;DEFB109P1B;DEFB4A;DEFB4B;FAM66B;FAM66E;FAM90A10;FAM90A13;FAM90A14;FAM90A18;FAM90A19;FAM90A7;FAM90A8;FAM90A9;LOC100132396;SPAG11A;SPAG11B;ZNF705G",790631,1,3,"-","48|0.00|60.42|39.58|**##*##********#******#*####******##*#*###*#**##",83,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[57,"1033_4","chr8:13643825-13673049",1,"8p22",null,null,29225,1,1,2,"41|2.44|92.68|4.88|**********#*****.*******************#****",41,"M","L","other","MPX","stage1","F_NA","long","one_parent","one_parent","one_parent"]
[58,"1033_4","chr8:16306880-16348667",1,"8p22",null,null,41788,1,1,2,"14|0.00|100.00|0.00|**************",16,"M","L","other","MPX","stage1","F_NA","long","one_parent","one_parent","one_parent"]
[59,"1033_4","chr8:135129150-135135129",1,"8q24.22",null,null,5980,1,1,2,"7|0.00|100.00|0.00|*******",7,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[60,"1033_4","chr9:37046373-37087670",3,"9p13.2","LOC100506710","LOC100506710",41298,1,4,5,"11|18.18|81.82|0.00|*.*******.*",11,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[61,"1033_4","chr10:122759878-122774992",1,"10q26.12",null,null,15115,1,1,2,"15|0.00|86.67|13.33|*******#*****#*",16,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[62,"1033_4","chr11:25619991-25679442",1,"11p14.3",null,null,59452,1,1,2,"26|7.69|88.46|3.85|*.**.***#*****************",27,"M","L","other","MPX","stage1","F_NA","long","one_parent","one_parent","one_parent"]
[63,"1033_4","chr11:55124465-55209499",1,"11q11","OR4C11;OR4C6;OR4P4;OR4S2","OR4C11;OR4C6;OR4P4;OR4S2",85035,1,1,2,"37|2.70|94.59|2.70|******************#**************.***",49,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
[64,"1033_4","chr13:56654503-56680301",1,"13q21.1",null,null,25799,1,1,2,"7|0.00|57.14|42.86|#**#**#",7,"M","L","other","MPX","stage1","F_NA","MAT","one_parent","one_parent","one_parent"]
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[73,"1033_4","chr22:39200645-39237621",1,"22q13.1","MKL1",null,36977,1,1,2,"27|3.70|96.30|0.00|*************.*************",30,"M","L","other","MPX","stage1","F_NA","long","one_parent","one_parent","one_parent"]
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[75,"1038_3","chr2:4191253-4200019",1,"2p25.3",null,null,8767,1,1,2,"7|0.00|100.00|0.00|*******",7,"M","L","other","MPX","stage1","PAT","M_NA","one_parent","one_parent","one_parent"]
[76,"1038_3","chr2:195287278-195406479",1,"2q32.3",null,null,119202,1,1,2,"27|0.00|100.00|0.00|***************************",30,"M","L","other","MPX","stage1","long","M_NA","one_parent","one_parent","one_parent"]
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[80,"1038_3","chr6:31388080-31396472",1,"6p21.33",null,null,8393,1,1,2,"17|0.00|52.94|47.06|*#***#***##*####*",15,"M","L","other","MPX","stage1","short","M_NA","one_parent","one_parent","one_parent"]
[81,"1038_3","chr7:110178825-110196597",1,"7q31.1","IMMP2L",null,17773,1,1,2,"10|0.00|100.00|0.00|**********",11,"M","L","other","MPX","stage1","-","M_NA","one_parent","one_parent","one_parent"]
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[89,"1045_3","chr2:41092148-41101972",1,"2p22.1",null,null,9825,1,1,2,"11|0.00|100.00|0.00|***********",10,"M","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[90,"1045_3","chr3:83206919-83239473",1,"3p12.2",null,null,32555,1,1,2,"9|0.00|88.89|11.11|****#****",9,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[91,"1045_3","chr5:155410444-155421495",1,"5q33.2",null,null,11052,1,1,2,"7|0.00|100.00|0.00|*******",7,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
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[93,"1045_3","chr6:79029649-79090197",1,"6q14.1",null,null,60549,1,0,1,"33|0.00|0.00|100.00|#################################",37,"M","L","European","MPX","stage1","PAT","MAT","both","both","both/either"]
[94,"1045_3","chr7:141412174-141439888",1,"7q34","MGAM",null,27715,1,0,1,"15|0.00|13.33|86.67|#*#########*###",14,"M","L","European","MPX","stage1","PAT","MAT","both","both","both/either"]
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[96,"1045_3","chr10:20890630-20896007",1,"10p12.31",null,null,5378,1,1,2,"9|0.00|100.00|0.00|*********",11,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
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[98,"1045_3","chr13:24115481-24202712",3,"13q12.12","ATP12A","ATP12A",87232,1,3,5,"65|15.38|72.31|12.31|#*...**##.*##.*#.**.***#*#.*.**********************************.*",76,"M","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
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[103,"1050_3","chr1:111180501-111189246",1,"1p13.3",null,null,8746,1,1,2,"6|0.00|100.00|0.00|******",6,"F","L","European","MPX","stage1","short","-","misc","misc","misc"]
[104,"1050_3","chr1:167493526-167507362",1,"1q24.2","NME7",null,13837,1,1,2,"7|0.00|100.00|0.00|*******",3,"F","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[105,"1050_3","chr2:34556561-34580068",1,"2p22.3",null,null,23508,1,0,1,"7|0.00|0.00|100.00|#######",8,"F","L","European","MPX","stage1","-","-","p_denovo","p_denovo","p_denovo"]
[106,"1050_3","chr2:242497808-242684011",1,"2q37.3","LOC728323","LOC728323",186204,1,1,2,"45|0.00|93.33|6.67|*********************************#*******#**#",59,"F","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
[107,"1050_3","chr3:35779615-35913799",3,"3p22.3","ARPP21","ARPP21",134185,1,3,5,"32|37.50|31.25|31.25|******.#...*##.###..#*..#.#*..#*",38,"F","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
[108,"1050_3","chr4:34469747-34499424",1,"4p15.1",null,null,29678,1,1,2,"5|0.00|80.00|20.00|**#**",4,"F","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
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[111,"1050_3","chr5:180108611-180122934",3,"5q35.3","OR2Y1",null,14324,1,3,5,"6|50.00|16.67|33.33|#...#*",5,"F","L","European","MPX","stage1","PAT","-","PAT","PAT","PAT"]
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[113,"1050_3","chr6:79029649-79090197",1,"6q14.1",null,null,60549,1,0,1,"33|0.00|0.00|100.00|#################################",37,"F","L","European","MPX","stage1","PAT","MAT","both","both","both/either"]
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[118,"1050_3","chr11:81181640-81194909",1,"11q14.1",null,null,13270,1,1,2,"10|0.00|100.00|0.00|**********",10,"F","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
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[120,"1050_3","chr12:31157554-31299963",3,"12p11.21","DDX11",null,142410,1,3,5,"52|23.08|67.31|9.62|*****.*.*.*###*#*#********.***.**..*******.....*****",57,"F","L","European","MPX","stage1","-","MAT","MAT","MAT","MAT"]
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[127706,"9867_201","chr11:2022607-2040590",1,"11p15.5",null,null,17984,0,1,"-","9|11.11|88.89|0.00|****.****",9,"M","B","other","SPX","stage2","-","MAT","MAT","MAT","MAT"]
[127837,"9871_205","chr7:109229030-109242941",1,"7q31.1",null,null,13912,0,"-","-","5|0.00|20.00|80.00|####*",5,"M","B","other","SPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
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[128741,"9900_203","chr16:2638870-2645417",1,"16p13.3","FLJ42627",null,6548,0,"-","-","7|0.00|14.29|85.71|######*",7,"M","B","other","SPX","stage2","PAT","MAT","both","p_denovo","p_denovo"]
[128918,"9903_201","chr12:87031863-87043741",1,"12q21.32","CEP290","CEP290",11879,0,1,"-","3|0.00|100.00|0.00|***",5,"M","B","other","SPX","stage2","PAT","MAT","both","both","both/either"]
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[129145,"9908_203","chrX:77284023-77337391",3,"Xq21.1","TAF9B",null,53369,0,2,"-","2|0.00|50.00|50.00|*#",14,"M","B","other","SPX","stage2","-","MAT","MAT","MAT","MAT"]
[129322,"9912_201","chrX:89247343-89310330",3,"Xq21.31",null,null,62988,0,2,2,"12|0.00|16.67|83.33|#####*##*###",12,"M","B","other","SPX","stage2","PAT","gain_loss","misc","misc","misc"]
[129339,"9914_201","chr4:43266400-43293749",1,"4p13",null,null,27350,0,"-","-","8|100.00|0.00|0.00|........",9,"M","B","other","MPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
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[129341,"9914_201","chr4:69131958-69173198",1,"4q13.2",null,null,41241,0,1,1,"3|0.00|66.67|33.33|**#",14,"M","B","other","MPX","stage2","short","MAT","misc","misc","misc"]
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[129346,"9914_201","chr6:77498434-77510033",3,"6q14.1",null,null,11600,0,3,"-","4|0.00|100.00|0.00|****",5,"M","B","other","MPX","stage2","PAT","gain_loss","misc","misc","misc"]
[129347,"9914_201","chr7:61797361-61816515",1,"7q11.21",null,null,19155,0,1,1,"5|0.00|100.00|0.00|*****",6,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129348,"9914_201","chr7:61849664-61880031",1,"7q11.21",null,null,30368,0,1,1,"7|14.29|85.71|0.00|***.***",9,"M","B","other","MPX","stage2","PAT","short","misc","misc","misc"]
[129349,"9914_201","chr7:75606985-75628341",3,"7q11.23",null,null,21357,0,"-","-","6|0.00|100.00|0.00|******",6,"M","B","other","MPX","stage2","PAT","MAT","both","both","both/either"]
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[129351,"9914_201","chr8:39351896-39393418",1,"8p11.23","ADAM5P","ADAM5P",41523,0,1,1,"10|0.00|100.00|0.00|**********",10,"M","B","other","MPX","stage2","PAT","short","misc","misc","misc"]
[129352,"9914_201","chr8:51383105-51390731",1,"8q11.22","SNTG1",null,7627,0,"-","-","5|20.00|80.00|0.00|.****",5,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129353,"9914_201","chr10:20890630-20897371",1,"10p12.31",null,null,6742,0,"-",1,"10|0.00|100.00|0.00|**********",12,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129354,"9914_201","chr14:18503398-18539875",3,"14q11.1",null,null,36478,0,3,3,"4|25.00|50.00|25.00|*#.*",5,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129355,"9914_201","chr14:18955344-19075130",3,"14q11.1","POTEM","POTEM",119787,0,3,"-","6|0.00|50.00|50.00|*##**#",13,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
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[129359,"9914_201","chr16:19856910-19871980",1,"16p12.3",null,null,15071,0,"-",1,"7|0.00|100.00|0.00|*******",8,"M","B","other","MPX","stage2","PAT","-","PAT","PAT","PAT"]
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[129361,"9914_201","chr16:33778130-33805342",1,"16p11.2",null,null,27213,0,1,1,"2|0.00|100.00|0.00|**",6,"M","B","other","MPX","stage2","PAT","MAT","both","both","both/either"]
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[129363,"9914_201","chr17:41788595-41914286",3,"17q21.31,17q21.32","ARL17B;NSFP1","ARL17B;NSFP1",125692,0,3,3,"5|0.00|100.00|0.00|*****",42,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129364,"9914_201","chr22:22676385-22717669",3,"22q11.23","GSTT1;GSTTP1;GSTTP2;LOC391322","GSTT1;GSTTP1;GSTTP2;LOC391322",41285,0,"-","-","7|0.00|57.14|42.86|#*#**#*",9,"M","B","other","MPX","stage2","PAT","MAT","both","both","both/either"]
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[129367,"9914_201","chrX:53543182-53571554",3,"Xp11.22","HUWE1",null,28373,0,2,"-","5|0.00|80.00|20.00|****#",31,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129368,"9914_201","chrX:55283288-55291107",3,"Xp11.21",null,null,7820,0,2,"-","0|-|-|-|-",11,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129369,"9914_201","chrX:61599263-61628610",3,"Xq11.1",null,null,29348,0,2,"-","3|0.00|66.67|33.33|#**",12,"M","B","other","MPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
[129370,"9914_201","chrX:62273751-62428716",3,"Xq11.1",null,null,154966,0,2,"-","7|0.00|85.71|14.29|*****#*",29,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129371,"9914_201","chrX:77284023-77337391",3,"Xq21.1","TAF9B",null,53369,0,2,"-","2|0.00|50.00|50.00|*#",14,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129372,"9914_201","chrX:88786329-88835373",3,"Xq21.31",null,null,49045,0,2,2,"11|0.00|27.27|72.73|###*####**#",11,"M","B","other","MPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
[129373,"9914_201","chrX:88982998-89049854",3,"Xq21.31",null,null,66857,0,2,2,"11|0.00|9.09|90.91|####*######",14,"M","B","other","MPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
[129374,"9914_201","chrX:89247343-89372025",3,"Xq21.31",null,null,124683,0,2,2,"20|0.00|20.00|80.00|#####*##*###*#*#####",20,"M","B","other","MPX","stage2","PAT","-","PAT","PAT","PAT"]
[129375,"9914_201","chrX:89477022-89623164",3,"Xq21.31",null,null,146143,0,2,2,"26|0.00|30.77|69.23|##*##*###*#***########**##",40,"M","B","other","MPX","stage2","PAT","-","PAT","PAT","PAT"]
[129376,"9914_201","chrX:89662544-89818825",3,"Xq21.31",null,null,156282,0,2,2,"20|0.00|25.00|75.00|######*#*##*##*##*##",21,"M","B","other","MPX","stage2","long","-","misc","misc","misc"]
[129377,"9914_201","chrX:89886408-89922059",3,"Xq21.31",null,null,35652,0,2,2,"7|0.00|14.29|85.71|#*#####",7,"M","B","other","MPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
[129378,"9914_201","chrX:90065672-90123609",3,"Xq21.31",null,null,57938,0,2,2,"8|0.00|12.50|87.50|##*#####",12,"M","B","other","MPX","stage2","PAT","-","PAT","PAT","PAT"]
[129379,"9914_201","chrX:90178175-90184652",3,"Xq21.31",null,null,6478,0,2,2,"1|0.00|100.00|0.00|*",18,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129380,"9914_201","chrX:90641104-90687401",3,"Xq21.31",null,null,46298,0,2,2,"6|0.00|16.67|83.33|####*#",6,"M","B","other","MPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
[129381,"9914_201","chrX:90765018-90850489",3,"Xq21.31",null,null,85472,0,2,2,"11|0.00|9.09|90.91|###*#######",11,"M","B","other","MPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
[129382,"9914_201","chrX:91095596-91227442",3,"Xq21.31","PCDH11X",null,131847,0,2,2,"23|0.00|26.09|73.91|*#*##**#*#####*########",23,"M","B","other","MPX","stage2","PAT","-","PAT","PAT","PAT"]
[129383,"9914_201","chrX:91665149-91875975",3,"Xq21.31","PCDH11X","PCDH11X",210827,0,2,2,"34|2.94|23.53|73.53|########***#*#####.##*###**#*#####",78,"M","B","other","MPX","stage2","PAT","-","PAT","PAT","PAT"]
[129384,"9914_201","chrX:92221350-92262011",3,"Xq21.32",null,null,40662,0,2,2,"9|0.00|33.33|66.67|##**#*###",9,"M","B","other","MPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
[129385,"9914_201","chrX:94235317-94268106",3,"Xq21.33",null,null,32790,0,"-","-","12|0.00|91.67|8.33|*******#****",13,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129386,"9914_201","chrX:119163450-119197094",3,"Xq24","RHOXF2;RHOXF2B","RHOXF2;RHOXF2B",33645,0,2,2,"3|0.00|0.00|100.00|###",8,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129387,"9914_201","chrX:127138206-127159716",3,"Xq25",null,null,21511,0,2,"-","0|-|-|-|-",6,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129388,"9914_201","chrX:139934934-140040065",3,"Xq27.1","SPANXB1;SPANXB2;SPANXF1",null,105132,0,2,"-","6|0.00|33.33|66.67|###**#",21,"M","B","other","MPX","stage2","-","MAT","MAT","MAT","MAT"]
[129389,"9914_201","chrX:140392899-140510957",3,"Xq27.2","CXorf18;SPANXA1;SPANXA2","CXorf18;SPANXA1;SPANXA2",118059,0,2,"-","5|0.00|0.00|100.00|#####",13,"M","B","other","MPX","stage2","PAT","MAT","both","both","both/either"]
[129390,"9916_201","chr1:17105790-17146815",1,"1p36.13","CROCC","CROCC",41026,0,"-","-","8|0.00|50.00|50.00|##*#**#*",9,"M","B","other","SPX","stage2","PAT","MAT","both","both","both/either"]
[129391,"9916_201","chr1:159779355-159862907",3,"1q23.3","FCGR2C;FCGR3A;FCGR3B;HSPA7","FCGR2C;FCGR3A;FCGR3B;HSPA7",83553,0,3,"-","12|25.00|50.00|25.00|*****.*.#.##",13,"M","B","other","SPX","stage2","PAT","-","PAT","PAT","PAT"]
[129392,"9916_201","chr2:34551325-34582939",3,"2p22.3",null,null,31615,0,"-","-","12|58.33|41.67|0.00|.*.*..*..*.*",13,"M","B","other","SPX","stage2","PAT","-","PAT","PAT","PAT"]
[129393,"9916_201","chr2:107954724-107963931",1,"2q12.3","SLC5A7",null,9208,0,1,"-","5|0.00|100.00|0.00|*****",5,"M","B","other","SPX","stage2","PAT","MAT","both","both","both/either"]
[129394,"9916_201","chr3:164004033-164101579",1,"3q26.1",null,null,97547,0,0,0,"8|0.00|0.00|100.00|########",8,"M","B","other","SPX","stage2","PAT","MAT","both","both","both/either"]
[129395,"9916_201","chr3:191220845-191227315",1,"3q28","LEPREL1",null,6471,0,"-","-","6|0.00|16.67|83.33|#####*",6,"M","B","other","SPX","stage2","PAT","-","PAT","PAT","PAT"]
[129396,"9916_201","chr4:64380191-64392223",3,"4q13.1",null,null,12033,0,"-","-","7|28.57|71.43|0.00|.***.**",7,"M","B","other","SPX","stage2","PAT","-","PAT","PAT","PAT"]
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[129448,"9919_202","chr1:195016368-195030988",3,"1q31.3","CFHR3","CFHR3",14621,0,3,3,"6|0.00|33.33|66.67|##**##",6,"M","B","other","SPX","stage2","short","MAT","misc","misc","misc"]
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[129563,"9923_201","chr22:15266873-15300434",3,"22q11.1",null,null,33562,0,3,3,"8|0.00|12.50|87.50|#####*##",8,"M","B","other","SPX","stage2","-","MAT","MAT","MAT","MAT"]
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[129567,"9923_201","chrX:55283288-55291987",3,"Xp11.21","PAGE3",null,8700,0,2,"-","1|0.00|100.00|0.00|*",13,"M","B","other","SPX","stage2","-","MAT","MAT","MAT","MAT"]
[129568,"9923_201","chrX:62264994-62422278",3,"Xq11.1",null,null,157285,0,2,2,"6|0.00|83.33|16.67|*****#",29,"M","B","other","SPX","stage2","-","MAT","MAT","MAT","MAT"]
[129569,"9923_201","chrX:64757625-64764591",3,"Xq11.1",null,null,6967,0,2,"-","2|0.00|100.00|0.00|**",13,"M","B","other","SPX","stage2","-","MAT","MAT","MAT","MAT"]
[129570,"9923_201","chrX:88807597-88842481",3,"Xq21.31",null,null,34885,0,2,2,"9|0.00|33.33|66.67|####**#*#",9,"M","B","other","SPX","stage2","PAT","-","PAT","PAT","PAT"]
[129571,"9923_201","chrX:88982998-89027238",3,"Xq21.31",null,null,44241,0,2,2,"8|0.00|12.50|87.50|####*###",8,"M","B","other","SPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
[129572,"9923_201","chrX:89247343-89623164",3,"Xq21.31",null,null,375822,0,2,2,"57|0.00|24.56|75.44|#####*######*#*#########*##*#**##*##*###*#**#########**##",72,"M","B","other","SPX","stage2","PAT","-","PAT","PAT","PAT"]
[129573,"9923_201","chrX:89662544-89711417",3,"Xq21.31",null,null,48874,0,2,2,"5|0.00|0.00|100.00|#####",6,"M","B","other","SPX","stage2","PAT","gain_loss","misc","misc","misc"]
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[129575,"9923_201","chrX:90065672-90160976",3,"Xq21.31",null,null,95305,0,2,2,"14|0.00|14.29|85.71|########*##*##",19,"M","B","other","SPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
[129576,"9923_201","chrX:90178175-90184652",3,"Xq21.31",null,null,6478,0,2,2,"1|0.00|100.00|0.00|*",18,"M","B","other","SPX","stage2","-","MAT","MAT","MAT","MAT"]
[129577,"9923_201","chrX:90641104-90687401",3,"Xq21.31",null,null,46298,0,2,"-","6|0.00|16.67|83.33|####*#",6,"M","B","other","SPX","stage2","PAT","-","PAT","PAT","PAT"]
[129578,"9923_201","chrX:90765018-90843427",3,"Xq21.31",null,null,78410,0,2,2,"10|0.00|10.00|90.00|###*######",10,"M","B","other","SPX","stage2","PAT","gain_loss","misc","misc","misc"]
[129579,"9923_201","chrX:91095596-91275005",3,"Xq21.31","PCDH11X",null,179410,0,2,2,"34|0.00|32.35|67.65|*#*##**#*#####*###########**#***##",34,"M","B","other","SPX","stage2","PAT","-","PAT","PAT","PAT"]
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[129581,"9923_201","chrX:92221350-92244057",3,"Xq21.32",null,null,22708,0,2,2,"7|0.00|42.86|57.14|##**#*#",7,"M","B","other","SPX","stage2","-","-","p_denovo","p_denovo","p_denovo"]
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