{"text_format":"2","workbook":"xlsx","n_sheets":6,"sheets":["RPOB","PNCA","INH","GYR","RRS","REVIEWS"],"not_rendered":{"charts":0,"images":1,"macros":0,"external_links":0,"defined_names":0,"comments":0,"pivot_tables":0},"unopened":[],"bounds":{"document_bytes":16777216,"sheet_cells":100000,"run_cost":"one","rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0,"cell_chars":16384,"cell_head_chars":4096},"cells_cut":0,"cells_raw":0,"read":"whole","date_system":"1900"}

{"sheet":"RPOB","index":0,"n_rows":131,"n_cols":5,"rows_kept":131,"cut":false,"hidden":false,"merged":[]}
["Nucleotide","Codon H37Rv","Confidence","Primary reference","doi/PMID"]
["G508T","V170F",null,"Heep M AAC 2000","10.1128/AAC.44.4.1075-1077.2000 "]
["C857T","A286V",null,"Taniguchi H FEMS Micro 1996","PMID: 8870258"]
["G1226T","Q409H",null,"Cavusoglu C JCM 2002","10.1128/JCM.40.12.4435-4438.2002 "]
["A1268C","E423A",null,"Schilke K IntJTubLungDis 1999","PMID: 10423225"]
["C1272G","F424L",null,"Heym B Lancet 1994","10.1016/S0140-6736(94)91338-2"]
["C1272A","F424L",null,"Stavrum R PlosOne 2009","10.1371/journal.pone.0004540"]
["T1271C","F424S",null,"Wang Q JProtRes 2007","10.1021/pr070242z"]
["G1276A","G426S",null,"Bahrmand AR JCM 2009","10.1128/JCM.r00548-09"]
["G1277A","G426D",null,"Kim BJ JCM 1997","PMID: 9003625 "]
["GC1277AT","G426D",null,"Bahrmand AR JCM 2009"]
["CGGCAC1275-","GT426-","#","Bahrmand AR JCM 2009"]
["GGCACC1276-","GT426-","#","Bahrmand AR JCM 2009"]
["AC1279CA","T427H",null,"Bahrmand AR JCM 2009"]
["A1279C","T427P",null,"Bahrmand AR JCM 2009"]
["A1279G","T427A",null,"Bahrmand AR JCM 2009"]
["C1280G","T427S",null,"Mani C JCM 2001","10.1128/JCM.39.8.2987-2990.2001 "]
["ACC1279GCT","T427S",null,"Matsiota-Bernard P JCM 1998","PMID:  9431913 "]
["AGC1282CAG","S428Q",null,"Zenteno-Cuevas R MemInstOswaldCruz 2009","PMID: 19547874"]
["G1283C","S428T",null,"Williams D AAC 1994","10.1128/AAC.38.10.2380 "]
["C1284G","S428R",null,"Sekiguchi J JCM 2007 Jan","10.1128/JCM.00750-06 "]
["C1285A","Q429K",null,"Zenteno-Cuevas R MemInstOswaldCruz 2009"]
["G1287C","Q429H",null,"Sajduda A JCM 2004","10.1128/JCM.42.6.2425-2431.2004"]
["T1289C","L430P","High confidence","Kapur V JCM 1994","PMID:  8027320"]
["T1289G","L430R",null,"Kapur V JCM 1994"]
["C1288G","L430V",null,"Siddiqi N AAC 2002","10.1128/AAC.46.2.443-450.2002 "]
["G1292C","S431T",null,"Kapur V JCM 1994"]
["G1292T","S431I",null,"Sajduda A JCM 2004"]
["A1291C","S431R",null,"Sajduda A JCM 2004"]
["A1291G","S431G",null,"Chan RCY JAC 2007","10.1093/jac/dkm054"]
["C1294T","Q432-","STOP codon created","Bahrmand AR JCM 2009"]
["CAA1294AAT","Q432N","#never find by BIMI","Bahrmand AR JCM 2009"]
["A1295T","Q432L","High confidence","Kapur V JCM 1994"]
["C1294A","Q432K","Not found alone up to now","Kapur V JCM 1994"]
["C1294G","Q432E",null,"Prammananan T CMI 2008","10.1111/j.1469-0691.2008.01951.x"]
["A1295C","Q432P",null,"Kim BJ JCM 1997"]
["A1296C","Q432H",null,"Valim A JCM 2000","PMID: 10921994"]
["A1296T","Q432N","Not found alone up to now","Bahrmand AR JCM 2009"]
["A1295G","Q432R",null,"Bahrmand AR JCM 2010"]
["+1294TTC","+432F",null,"Kapur V JCM 1994"]
["+1294TTCATG","+432FM","#","Kapur V JCM 1994"]
["CAATTC1294-","QE432-",null,"Kapur V JCM 1995"]
["AATTCATGG1295-","QFM432H",null,"Kapur V JCM 1996"]
["TTC1296-","F433-",null,"Valim A JCM 2000"]
["C1299G","F433L",null,"Taniguchi H FEMS Micro 1996"]
["T1297G","F433V",null,"Valim A JCM 2000"]
["+1297CGG","+433R",null,"Cavusoglu C JCM 2002"]
["CAT1299-","FM433L",null,"Lipin MY CMI 2007","10.1111/j.1469-0691.2007.01711.x"]
["TTCATGGAC1297-","FMD433-",null,"Valim A JCM 2000"]
["CATGGACCAGAA1299-","MDQN434-",null,"Valim A JCM 2000"]
["ATGGACCAGAAC1300-","MDQN434-",null,"Valim A JCM 2000"]
["+1300TTC","+434F",null,"Hillemann D Int J Tuberc Lung Dis 2005","PMID: 16229229"]
["G1302T","M434I",null,"Sajduda A JCM 2004"]
["G1302A","M434I",null,"Sajduda A JCM 2005"]
["G1303A","D435N",null,"Schilke K IntJTubLungDis 1999"]
["G1303C","D435H",null,"Bahrmand AR JCM 2009"]
["A1304T","D435V","High confidence","Kapur V JCM 1994"]
["C1305G","D435E",null,"Kapur V JCM 1994"]
["A1304G","D435G",null,"Hillemann D Int J Tuberc Lung Dis 2005"]
["A1304C","D435A",null,"Hillemann D Int J Tuberc Lung Dis 2006"]
["AC1304TG","D435V",null,"Sajduda A JCM 2004"]
["G1303T","D435Y",null,"Kapur V JCM 1994"]
["GA1303TT","D435F",null,"Hillemann D Int J Tuberc Lung Dis 2005"]
["GACCAG1303-","DQ435-","#","Kapur V JCM 1994"]
["G1308C","Q436H",null,"Xueqiong W MolBiotech 2009","PMID: 18600483"]
["CAG1306-","Q436-",null,"Mani C JCM 2001"]
["A1307T","Q436L",null,"Sajduda A JCM 2004"]
["CAGAAC1306-","QN436-",null,"Hillemann D AAC 2005","10.1128/AAC.49.3.1229-1231.2005 "]
["GAACAA1308-","QNN436H",null,"Kapur V JCM 1994"]
["A1309T","N437Y",null,"Wang Q JProtRes 2007"]
["A1310C","N437T",null,"Siddiqi N AAC 2002"]
["A1310T","N437I",null,"Hillemann D AAC 2005"]
["A1309C","N437H",null,"Kim BJ JCM 1997"]
["A1309G","N437D",null,"Chan RCY JAC 2007"]
["C1314G","N438K",null,"Bahrmand AR JCM 2009"]
["AAC1312-","N438-",null,"Heym B Lancet 1994"]
["C1318A","L440M",null,"Heym B Lancet 1995"]
["T1319C","L440P",null,"Taniguchi H FEMS Micro 1996"]
["C1322T","S441L","High confidence","Bodmer T JAC 1995","10.1093/jac/35.2.345"]
["TC1321CA","S441Q",null,"Yuen LK JCM 1999","PMID: 10565894"]
["C1322G","S441W",null,"El Baghdadi J IJTLD 2003","PMID:  12870687"]
["G1324T","G442W",null,"Pozzi G JCM 1999","PMID: 10074552"]
["G1325C","G442A",null,"Bahrmand AR JCM 2009"]
["T1328G","L443W",null,"Valim A JCM 2000"]
["T1328C","L443S",null,"Zenteno-Cuevas R MemInstOswaldCruz 2009"]
["A1330C","T444P",null,"Valim A JCM 2000"]
["C1331T","T444I",null,"Pozzi G JCM 1999"]
["CA1333TT","H445F",null,"Bahrmand AR JCM 2009"]
["C1333A","H445N","High confidence","Ramaswamy SV J Med Micro 2004","10.1099/jmm.0.05343-0 "]
["C1333G","H445D","High confidence","Kapur V JCM 1994"]
["C1333T","H445Y","High confidence","Kapur V JCM 1994"]
["A1334C","H445T",null,"Kapur V JCM 1995"]
["A1334G","H445S",null,"Prammananan T CMI 2008"]
["CA1333GG","H445G",null,"Prammananan T CMI 2009"]
["A1334G","H445R","High confidence","Kim BJ JCM 1997"]
["A1334C","H445P",null,"Bodmer T JAC 1995"]
["AC1334TG","H445L",null,"Valim A JCM 2000"]
["A1334T","H445L",null,"Sheng J JApplMicro 2008","10.1111/j.1365-2672.2008.03815.x"]
["C1335A","H445Q",null,"Kapur V JCM 1994"]
["C1335G","H445Q",null,"Bodmer T JAC 1995"]
["G1338T","K446N",null,"Siddiqi N AAC 2002"]
["AAG1336-","K446-",null,"Valim A JCM 2000"]
["A1336C","K446Q",null,"Williams D AAC 1994","10.1128/AAC.38.10.2380 "]
["G1340A","R447H",null,"Siddiqi N AAC 2002"]
["G1340C","R447P",null,"Siddiqi N AAC 2002"]
["GC1340CT","R447P",null,"Zenteno-Cuevas R MemInstOswaldCruz 2009"]
["C1370A","L457STOP",null,"Wang Q JProtRes 2007"]
["TC1348CA","S450Q",null,"Wang Q JProtRes 2008"]
["C1349T","S450L","High confidence","Donabella V Am J Respir Cell Mol Biol 1994","10.1165/ajrcmb.11.6.7946393"]
["C1349G","S450W","High confidence","Bodmer T JAC 1995"]
["CG1349AT","S450Y","High confidence","Bodmer T JAC 1995"]
["CG1349TT","S450F",null,"Hillemann D AAC 2005"]
["C1349G","S450C",null,"Hillemann D AAC 2006"]
["T1355C","L452P","High confidence","Moghazeh SL AAC 1996","PMID:  8913484"]
["TG1355CT","L452P","High confidence","Valim A JCM 2000"]
["C1360T","P454S",null,"Tracevska T JCM 2002 ","10.1128/JCM.40.10.3789-3792.2002 "]
["C1361A","P454H",null,"Prammananan T CMI 2008"]
["T1370C","L457P",null,"Wang Q JProtRes 2007"]
["A1379G","E460G",null,"Prammananan T CMI 2008"]
["G1380T","E460G",null,"Pozzi G JCM 1999"]
["C1390A","L464M",null,"Aslan G JpnJInfectDis 2008","PMID: 18653964"]
["T1414G","S472A",null,"Pozzi G JCM 1999"]
["A1438G","I480V",null,"Ramaswamy SV J Med Micro 2004"]
["T1439C","I480T",null,"Heep M JCM 2001","10.1128/JCM.39.1.107-110.2001 "]
["A1442G","E481G",null,"Hauck Y JAC 2009","10.1093/jac/dkp204"]
["C1468G","L490V",null,"Heep M JCM 2001"]
["A1471T","I491F",null,"Yuen LK JCM 1999"]
["C1478T","S493L",null,"Chan RCY JAC 2007"]
["T1621G","S541A",null,"Prammananan T CMI 2008"]
["C1654T","R552C",null,"Heep M JCM 2001"]
["G1776T","E592D",null,"Heep M JCM 2001"]

{"sheet":"PNCA","index":1,"n_rows":264,"n_cols":5,"rows_kept":264,"cut":false,"hidden":false,"merged":[]}
["Nucleotide","Codon H37Rv","Confidence","Primary reference","doi/PMID"]
["T-12G"," ",null,"Marttila HJ AAC 1999","PMID: 10390239"]
["A-11C"," ",null,"Scorpio A AAC 1997","PMID: 9055989"]
["A-11G"," ","High Confidence","Sreevatsan S AAC 1997","PMID: 9056006"]
["T-7C"," ",null,"Morlock GP AAC 2000","10.1128/AAC.44.12.3298-3301.2000 "]
["ATGCGGGC1-","1 Frameshift",null,"Hou L Epi Infect 2000","PMID: 10813147"]
["ATGCGGGCGTT1-","1 Frameshift",null,"Scorpio A AAC 1997"]
["T2C","M1T",null,"Portugal I AAC 2004","PMID: 10449496"]
["G3T","M1I",null,"Lee KW J Korean Med Sci 2001","PMID: 11641519"]
["G7C","A3P","High Confidence","Lemaitre N AAC 1999","PMID: 10390238"]
["C8A","A3E",null,"Sekiguchi JI JCM 2007","10.1128/JCM.00352-07 "]
["T11G","L4W",null,"Lee KW J Korean Med Sci 2001"]
["T11C","L4S",null,"Morlock GP AAC 2000"]
["T14G","I5S",null,"Scorpio A AAC 1997"]
["A16C","I6L",null,"Casali N Genome Research 2012 ","10.1101/gr.128678.111"]
["G19A","V7I",null,"Escalante P TuberLung Dis 1998","PMID: 10645449"]
["G19T","V7F",null,"Escalante P TuberLung Dis 1998"]
["T20G","V7G",null,"Hirano  TLD 1997","PMID: 9692180"]
["T20A","V7D",null,"Lee KW J Korean Med Sci 2001"]
["G22T","D8Y",null,"Marttila HJ AAC 1999"]
["A23G","D8G",null,"Lee KW J Korean Med Sci 2001"]
["C24G","D8E",null,"Scorpio A AAC 1997"]
["T26C","V9A",null,"Lee KW J Korean Med Sci 2001"]
["T26G","V9G",null,"Lee KW J Korean Med Sci 2001"]
["G25T","V9L",null,"Louw GE Int J Tuberc Lung Dis 2006","PMID: 16848344"]
["GT25TC","V9S",null,"Chan RCY JAC 2007","10.1093/jac/dkm054"]
["C28-","10 Frameshift",null,"Scorpio A AAC 1997"]
["C28A","Q10K",null,"Marttila HJ AAC 1999"]
["C28T","Q10STOP",null,"Marttila HJ AAC 1999"]
["A29G","Q10R",null,"Cheng SJ AAC 2000","10.1128/AAC.44.3.528-532.2000 "]
["A29C","Q10P",null,"Hirano  TLD 1998"]
["AG29CA","Q10P","High Confidence","Morlock GP AAC 2000"]
["G34A","D12N",null,"Scorpio A AAC 1997"]
["A35C","D12A",null,"Scorpio A AAC 1997"]
["T38C","F13S","High Confidence","Lemaitre N AAC 1999"]
["T40C","C14R",null,"Scorpio A AAC 1997"]
["G41A","C14Y","High Confidence","Lee KW J Korean Med Sci 2001"]
["G47-","16 Frameshift",null,"Chan RCY JAC 2007"]
["G50A","G17D",null,"Hirano  TLD 1998"]
["G50T","G17V","High Confidence","Chan RCY JAC 2007"]
["+52GG","Frameshift",null,"Cheng SJ AAC 2000"]
["T56G","L19R",null,"Chan RCY JAC 2007"]
["T56C","L19P",null,"Sreevatsan S AAC 1997"]
["T62G","V21G","High Confidence","Chan RCY JAC 2007"]
["A64-","22 Frameshift","High Confidence","Chan RCY JAC 2007"]
["C59-","20 Frameshift",null,"Hou L Epi Infect 2000"]
["GT68TC","G23V",null,"Lee KW J Korean Med Sci 2001"]
["G70-","24 Frameshift",null,"Sreevatsan S AAC 1997"]
["G71-","24 Frameshift",null,"Hou L Epi Infect 2000"]
["CC74AA","A25E",null,"Lee KW J Korean Med Sci 2001"]
["C77G","A26G",null,"Scorpio A AAC 1997"]
["C84-","28 Frameshift",null,"Marttila HJ AAC 1999"]
["C83A","A28D",null,"Lee KW J Korean Med Sci 2001"]
["GCCATCAGCGACTACCTGGCCGAA88-","Frameshift",null,"Hannan MM JCM 2001","10.1128/JCM.39.2.647-650.2001 "]
["GACTACCATCACGTCGTGGCAACCAAGGACTTC118-","Frameshift",null,"Scorpio A AAC 1997"]
["+100T","34 Frameshift",null,"Scorpio A AAC 1997"]
["A101C","Y34S",null,"Hirano  TLD 1998"]
["T104G","L35R","High Confidence","Louw GE Int J Tuberc Lung Dis 2006"]
["G109T","E37-","High Confidence","Louw GE Int J Tuberc Lung Dis 2006"]
["GG109TA","E37-","STOP CODON","Louw GE Int J Tuberc Lung Dis 2006"]
["-106NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN","Frame/TRUNC","del 5.3kb","Morlock GP AAC 2000"]
["T121C","Y41H",null,"Hou L Epi Infect 2000"]
["C123A","Y41STOP",null,"Hirano  TLD 1998"]
["C123G","Y41STOP",null,"Sreevatsan S AAC 1997"]
["A128C","H43P","High Confidence","Hirano  TLD 1998"]
["T134G","V45G",null,"Lee KW J Korean Med Sci 2001"]
["+136G","46 Frameshift",null,"Hirano  TLD 1998"]
["G136C","A46P",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["C137A","A46E",null,"Cheng SJ AAC 2000"]
["C137T","A46V",null,"Cheng SJ AAC 2000"]
["A139C","T47P","High Confidence","Hou L Epi Infect 2000"]
["A139T","T47S",null,"Marttila HJ AAC 1999"]
["A139G","T47A",null,"Sreevatsan S AAC 1997"]
["G145C","D49H","High Confidence","Louw GE Int J Tuberc Lung Dis 2006"]
["A146C","D49A",null,"Lee KW J Korean Med Sci 2001"]
["A146T","D49V",null,"Marttila HJ AAC 1999"]
["A146G","D49G",null,"Marttila HJ AAC 1999"]
["C151A","H51N",null,"Rodrigues V de F AAC 2005","10.1128/AAC.49.1.444-446.2005 "]
["C151T","H51Y",null,"Mestdagh M AAC 1999","PMID: 10471589"]
["CACATGCACCCGGGTGACCACTTCTCCGGC151-","Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["A152C","H51P",null,"Hirano  TLD 1998"]
["A152G","H51R","High Confidence","Hirano  TLD 1998"]
["C153G","H51Q","High Confidence","Sekiguchi JI JCM 2007"]
["C153A","H51Q",null,"Sekiguchi JI JCM 2007"]
["G157A","D53N",null,"Sekiguchi JI JCM 2007"]
["A158C","D53A",null,"Cheng SJ AAC 2000"]
["A158-","53 Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["C160 A","P54T",null,"Sreevatsan S AAC 1997"]
["C161T","P54L","High Confidence","Louw GE Int J Tuberc Lung Dis 2006"]
["C161-","54 Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["+162T","54 Frameshift",null,"Scorpio A AAC 1997"]
["G162-","54 Frameshift",null,"Scorpio A Nature Med 1996","PMID: 8640557"]
["C169T","H57Y",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["C169G","H57D","High Confidence","Sreevatsan S AAC 1997"]
["A170C","H57P","High Confidence M bovis typical","Brown TJ JMedMicro 2000"]
["A170T","H57L",null,"Chan RCY JAC 2007"]
["T172-","58 Frameshift",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["T172C","F58L","High Confidence","Escalante P TuberLung Dis 1998"]
["C174G","F58L",null,"Hirano  TLD 1998"]
["T175C","S59P",null,"Brown TJ JMedMicro 2000","PMID: 10882091"]
["A181C","T61P",null,"Lemaitre N AAC 1999"]
["C185G","P62R",null,"Morlock GP AAC 2000"]
["C186T","P62L",null,"Chan RCY JAC 2007"]
["A188G","D63G",null,"Hirano  TLD 1998"]
["G187C","D63H","High Confidence","Scorpio A Nature Med 1996"]
["T190G","Y64D",null,"Lee KW J Korean Med Sci 2001"]
["+192A","64 Frameshift",null,"Lemaitre N AAC 1999"]
["CTCGTCGTGGCCACCGCATTGCGTCAGcGGTACTCCCGGCGCGGAC195-","Frameshift",null,"Mestdagh M AAC 1999"]
["T196C","S66P",null,"Marttila HJ AAC 1999"]
["T199C","S67P","High Confidence","Hirano  TLD 1998"]
["T202C","W68R","High Confidence","Lee KW J Korean Med Sci 2001"]
["T202G","W68G","High Confidence","Lee KW J Korean Med Sci 2001"]
["GG203CA","W68STOP","High Confidence","Cheng SJ AAC 2000"]
["G203C","W68S",null,"Lee KW J Korean Med Sci 2001"]
["G203T","W68L",null,"Sreevatsan S AAC 1997"]
["C206G","P69R","High Confidence","Scorpio A AAC 1997"]
["C206T","P69L",null,"Lemaitre N AAC 1999"]
["C211T","H71Y",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["C211G","H71D",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["A212G","H71R",null,"Morlock GP AAC 2000 "]
["T213G","H71E","High Confidence","Cheng SJ AAC 2000"]
["T214C","C72R",null,"Scorpio A AAC 1997"]
["G215A","C72Y","High Confidence","Louw GE Int J Tuberc Lung Dis 2006"]
["C216G","C72W",null,"Sekiguchi JI JCM 2007"]
["+218CGCATTGCCG","Frameshift",null,"Sekiguchi JI JCM 2007"]
["+221G","74 Frameshift",null,"Mestdagh M AAC 1999"]
["T224C","M75T",null,"Chan RC JAC 2007"]
["A226C","T76P",null,"Sreevatsan S AAC 1997"]
["C227T","T76I","High Confidence","Brown TJ JMedMicro 2000"]
["G233A","G78D",null,"Morlock GP AAC 2000"]
["C236G","A79G",null,"Chan RCY JAC 2007"]
["A239-","Frameshift",null,"Brown TJ JMedMicro 2000"]
["T241G","F80V",null,"Sachais BS MolDiag 1998","PMID: 10089282"]
["C244T","H82Y",null,"Brown TJ JMedMicro 2000"]
["A245G","H82R",null,"Cheng SJ AAC 2000"]
["A245T","H82L","High Confidence","Rodrigues V de F AAC 2005"]
["T254G","L85R",null,"Mestdagh M AAC 1999"]
["T254C","L85P",null,"Scorpio A AAC 1997"]
["C260T","T87M","High Confidence","Lemaitre N AAC 1999"]
["C263A","S88STOP",null,"Hou L Epi Infect 2000"]
["T269G","I90S",null,"Hannan MM JCM 2001"]
["TT280CC","F94P",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["A286C","K96Q",null,"Sreevatsan S AAC 1997"]
["A286G","K96E",null,"Lee KW J Korean Med Sci 2001"]
["A287C","K96T",null,"Scorpio A AAC 1997"]
["+287T","Frameshift",null,"Hirano  TLD 1998"]
["G288T","K96N",null,"Scorpio A AAC 1997"]
["G288-","Frameshift","High Confidence","Scorpio A Nature Med 1996"]
["G289A","G97S",null,"Cheng SJ AAC 2000"]
["G290A","G97D","High Confidence ","Morlock GP AAC 2000"]
["C297A","Y99STOP",null,"Hirano  TLD 1998"]
["C297G","Y99STOP",null,"Morlock GP AAC 2000"]
["+301G","Frameshift","High Confidence","Cheng SJ AAC 2000"]
["+301A","Frameshift",null,"Hou L Epi Infect 2000"]
["G304A","A102T",null,"Marttila HJ AAC 1999"]
["C305T","A102V",null,"Marttila HJ AAC 1999"]
["+306C","Frameshift","High Confidence","Lemaitre N AAC 1999"]
["T307C","Y103H",null,"Mestdagh M AAC 1999"]
["TACAG307-","Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["A308C","Y103S",null,"Lee KW J Korean Med Sci 2001"]
["A308G","Y103C",null,"Lemaitre N AAC 1999"]
["C309G","Y103STOP",null,"Marttila HJ AAC 1999"]
["C309A","Y103STOP","High Confidence","Morlock GP AAC 2000"]
["C312-","104 Frameshift",null,"Scorpio A AAC 1997"]
["C312G","S104R",null,"Hirano  TLD 1998"]
["G319A","G107K","High Confidence","Louw GE Int J Tuberc Lung Dis 2006"]
["A340C","T114P",null,"Hirano  TLD 1998"]
["C341-","Frameshift","High Confidence","Cheng SJ AAC 2000"]
["+1355NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN","Frameshift",null,"Lemaitre N AAC 1999"]
["C346G","L116V","ins 341bp","Louw GE Int J Tuberc Lung Dis 2006"]
["T347G","L116R",null,"Marttila HJ AAC 1999"]
["A353C","N118T","High Confidence","Hou L Epi Infect 2000"]
["T353C","W119R",null,"Sreevatsan S AAC 1997"]
["G357A","W119STOP",null,"Lee KW J Korean Med Sci 2001"]
["T359C","L120P",null,"Portugal I AAC 2004"]
["G362C","R121P",null,"Sreevatsan S AAC 1997"]
["+368AG","Frameshift","High Confidence","Hou L Epi Infect 2000"]
["+368NNNNNNNNNNNNNNNNNN","Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["T374C","V125D","ins 18bp ","Marttila HJ AAC 1999"]
["GAGGTCGATGT379-","Frameshift",null,"Marttila HJ AAC 1999"]
["GG381-","Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["+382AG","Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["T384G","V128G",null,"Rodrigues V de F AAC 2005"]
["ATGT386-","Frameshift","High Confidence","Lee KW J Korean Med Sci 2001"]
["+388GAGGTCGAT","+130EVD",null,"Morlock GP AAC 2000"]
["+388AGGTCGATG","+130RSM",null,"Sreevatsan S AAC 1997"]
["T389G","V130G","High Confidence","Hirano  TLD 1998"]
["+391GG","Frameshift","High Confidence","Lemaitre N AAC 1999"]
["G391-","Frameshift","High Confidence","Scorpio A AAC 1997"]
["+392G","Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["G395A","G132D",null,"Hirano  TLD 1998"]
["G394A","G132S",null,"Scorpio A AAC 1997"]
["GTATTGCCACC395-","Frameshift",null,"Hirano  TLD 1998"]
["+397T","Frameshift",null,"Sreevatsan S AAC 1997"]
["T398C","I133T",null,"Marttila HJ AAC 1999"]
["T398A","I133N",null,"Morlock GP AAC 2000"]
["C401T","A134V",null,"Escalante P TuberLung Dis 1998"]
["A403C","T135P","High Confidence","Morlock GP AAC 2000"]
["++403CC","Frameshift",null,"Hou L Epi Infect 2000"]
["+403C","Frameshift",null,"Sreevatsan S AAC 1997"]
["G406T","D136Y",null,"Lee KW J Korean Med Sci 2001"]
["G406A","D136N",null,"Lee KW J Korean Med Sci 2001"]
["G406C","D136H",null,"Mestdagh M AAC 1999"]
["G406-","Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["A407G","D136G",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["+407C","Frameshift",null,"Mestdagh M AAC 1999"]
["A410C","H137P",null,"Scorpio A AAC 1997"]
["A410G","H137R",null,"Sreevatsan S AAC 1997"]
["G413C","C138S","High Confidence","Cheng SJ AAC 2000"]
["G413A","C138Y",null,"Scorpio A Nature Med 1996"]
["+414G","Frameshift","High Confidence","Lee KW J Korean Med Sci 2001"]
["G415A","V139M",null,"Cheng SJ AAC 2000"]
["G415C","V139L","High Confidence","Morlock GP AAC 2000"]
["T416G","V139G","High Confidence","Morlock GP AAC 2000"]
["T416C","V139A",null,"Sreevatsan S AAC 1997"]
["TG416-","Frameshift","High Confidence","Scorpio A AAC 1997"]
["C418A","R140S",null,"Cheng SJ AAC 2000"]
["ACGTCGGCAATCGAGGCGGTGTTCTACAAGGGTGCCTACACC419-","Frameshift","High Confidence","Lemaitre N AAC 1999"]
["+420G","Frameshift",null,"Cheng SJ AAC 2000"]
["+420GG","Frameshift",null,"Cheng SJ AAC 2000"]
["C421T","Q141STOP",null,"Lee KW J Korean Med Sci 2001"]
["A422C","Q141P",null,"Scorpio A Nature Med 1996"]
["A424C","T142P","High Confidence","Escalante P TuberLung Dis 1998"]
["A424G","T142A",null,"Hirano  TLD 1998"]
["C425A","T142K",null,"Scorpio A AAC 1997"]
["C425T","T142M","High Confidence","Scorpio A AAC 1997"]
["+428GG","Frameshift",null,"Cheng SJ AAC 2000"]
["G436A","A146T",null,"Lee KW J Korean Med Sci 2001"]
["G436-","Frameshift",null,"Lemaitre N AAC 1999"]
["C437T","A146V",null,"Hirano  TLD 1998"]
["C442A","R148S",null,"Brown TJ JMedMicro 2000"]
["G443-","Frameshift",null,"Scorpio A AAC 1997"]
["ATGGCTTG446-","Frameshift",null,"Cheng SJ AAC 2000"]
["T452-","Frameshift","High Confidence","Lee KW J Korean Med Sci 2001"]
["C458A","T153N",null,"Morlock GP AAC 2000"]
["A460G","R154G",null,"Marttila HJ AAC 1999"]
["T464G","V155G",null,"Lemaitre N AAC 1999"]
["T464C","V155A","High Confidence","Escalante P TuberLung Dis 1998"]
["+465T","Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["C475-","Frameshift",null,"Scorpio A AAC 1997"]
["T476C","L159P",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["T476G","L159R","High Confidence","Lee KW J Korean Med Sci 2001"]
["A478C","T160P",null,"Marttila HJ AAC 1999"]
["+480TGAC","Frameshift","High Confidence","Lee KW J Korean Med Sci 2001"]
["G481C","A161P",null,"Marttila HJ AAC 1999"]
["G485A","G162D","High Confidence","Chan RC JAC 2007"]
["+501GC","Frameshift","High Confidence","Hou L Epi Infect 2000"]
["C503A","T168N",null,"Cheng SJ AAC 2000"]
["G511A","A171T",null,"Mestdagh M AAC 1999"]
["G511C","A171P",null,"Sachais BS MolDiag 1998"]
["C512T","A171V",null,"Mestdagh M AAC 1999"]
["C512A","A171E",null,"Rodrigues V de F AAC 2005"]
["C512-","Frameshift","High Confidence","Mestdagh M AAC 1999"]
["T515C","L172P",null,"Hirano  TLD 1998"]
["CT514GC","L172A","High Confidence","Mestdagh M AAC 1999"]
["+518NNNNN","Frameshift",null,"Scorpio A AAC 1997"]
["A523G","M175V","ins 5bp ","Sekiguchi JI JCM 2007"]
["+532C","Frameshift",null,"Lee KW J Korean Med Sci 2001"]
["A535C","S179R",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["G538T","V180F",null,"Lee KW J Korean Med Sci 2001"]
["G543T","E181D",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["T545C","L182S",null,"Lemaitre N AAC 1999"]
["G554C","S185T",null,"Louw GE Int J Tuberc Lung Dis 2006"]
["G554T","S185I","High Confidence","Chan RCY JAC 2007"]

{"sheet":"INH","index":2,"n_rows":264,"n_cols":13,"rows_kept":264,"cut":false,"hidden":false,"merged":[]}
["Gene","Nucleotide","Codon H37Rv","Confidence","Primary reference","doi/PMID",null,"Gene","Nucleotide","Codon H37Rv","Confidence","Primary reference","doi/PMID"]
["KATG","G1T","V1L",null,"Gagneux S PLOS Path 2006","10.1371/journal.ppat.0020061",null,"INHA","A24C","K8N",null,"Hazbon MH AAC 2006","10.1128/AAC.00112-06 "]
["KATG","G1C","V1L",null,"Gagneux S PLOS Path 2006",null,null,"INHA","T47C","I16T",null,"Basso L JID 1998 ","10.1086/515362"]
["KATG","T2C","V1A",null,"Heym B MolMicro 1995","10.1111/j.1365-2958.1995.tb02238.x",null,"INHA","A61G","I21V",null,"Morlock GP AAC 2003","10.1128/AAC.47.12.3799-3805.2003 "]
["KATG","C4T","P2S",null,"Cockerill FR JID 1995","10.1093/infdis/171.1.240",null,"INHA","T62C","I21T",null,"Morlock GP AAC 2003","10.1128/AAC.47.12.3799-3805.2003 "]
["KATG","C30-","+10TTTGAASNGCPVVGHMKYPVEGGG",null,"Siddiqi N AAC 2002","10.1128/AAC.46.2.443-450.2002 ",null,"INHA","T140C","I47T",null,"Basso L JID 1998 ","10.1086/515362"]
["KATG","GAAACCAC28-","10Frameshift",null,"Cockerill FR JID 1995",null,null,"INHA","T233C","V78A",null,"Basso L JID 1998 ","10.1086/515362"]
["KATG","A31G","T11A",null,"Siddiqi N AAC 2002",null,null,"INHA","T280G","S94A",null,"Lee H Int J Tuberc Lung Dis 2000","PMID: 10815738"]
["KATG","A34C","T12P",null,"Siddiqi N AAC 2002",null,null,"INHA","C281T","S94L",null,"Vilcheze C Nat Med 2006 ","10.1038/nm1466"]
["KATG","G50A","S17N",null,"Cockerill FR JID 1995",null,null,"INHA","AT283CC","I95P",null,"Ristow M Lancet 1995","10.1016/S0140-6736(95)91351-3"]
["KATG","G56A","G19D",null,"Cockerill FR JID 1995",null,null,"INHA","T284C","I95T",null,"Ristow M Lancet 1995","10.1016/S0140-6736(95)91351-3"]
["KATG","+98A","33TRUNCATION",null,"Siddiqi N AAC 2002",null,null,"INHA","T581C","I194T",null,"Leung ET AAC 2006","10.1128/AAC.50.3.1075-1078.2006 "]
["KATG","A103G","N35D",null,"Siddiqi N AAC 2002"]
["KATG","G109-","37TRUNCATION",null,"Siddiqi N AAC 2002"]
["KATG","G114A","W38STOP",null,"Siddiqi N AAC 2003",null,null,"PROM MABA FABG1","A-92T-"," ",null,"Lee ASG AAC 1999","PMID: 10428945"]
["KATG","T143A","L48Q",null,"Siddiqi N AAC 2003",null,null,"PROM MABA FABG1","G-67C"," "," ","Doustdar F MDR 2008","10.1089/mdr.2008.0842"]
["KATG","A149-","50Frameshift",null,"Baker LV AAC 2005","10.1128/AAC.49.4.1455-1464.2005 ",null,"PROM MABA FABG1","G-24T",null," ","Rindi L Int J Tuberc Lung Dis 2005","PMID: 15675557"]
["KATG","GCCGTCGCTGACCCC157-","AVADP53-",null,"Pretorius GS AAC 1995","PMID: 8619582",null,"PROM MABA FABG1","G-17T"," "," ","Morlock GP AAC 2003","10.1128/AAC.47.12.3799-3805.2003 "]
["KATG","ACCCGGCCGTCGCTG152-","PAVAD52-",{"$nulls":4},"PROM MABA FABG1","A-16G"," "," ","Rouse DA AAC 1995","PMID: 8585728"]
["KATG","G181A","A61T",null,"Siddiqi N AAC 2002",null,null,"PROM MABA FABG1","C-15T"," ","High confidence","Lee ASG AAC 1999","PMID: 10428945"]
["KATG","+185C","62TRUNCATION",null,"Siddiqi N AAC 2002",null,null,"PROM MABA FABG1","A-11T"," "," ","Baker LV AAC 2005","10.1128/AAC.49.4.1455-1464.2005 "]
["KATG","C189A","D63E",null,"Rouse DA AAC 1995","PMID: 8585728",null,"PROM MABA FABG1","T-8A"," ","High confidence","Lee ASG AAC 1999","PMID: 10428945"]
["KATG","+195CCCC","65Frameshift",null,"Marttila HJ AAC 1996","PMID: 8878604",null,"PROM MABA FABG1","T-8C"," ","High confidence","Baker LV AAC 2005","10.1128/AAC.49.4.1455-1464.2005 "]
["KATG","G193A","A65T",null,"Cockerill FR JID 1995",null,null,"PROM MABA FABG1","T-8G"," ","High confidence","Rouse DA AAC 1995","PMID: 8585728"]
["KATG","G196C","A66P",null,"Cockerill FR JID 1995",null,null,"PROM MABA FABG1","T-5A"," "," ","Siddiqi N AAC 2002","10.1128/AAC.46.2.443-450.2002 "]
["KATG","T212A","I71N",null,"Cockerill FR JID 1995"]
["KATG","G214A","D72K",null,"Cockerill FR JID 1995"]
["KATG","A215G","D72G",null,"Chan RCY JAC 2007","10.1093/jac/dkm054"]
["KATG","G220T","D74Y",null,"Chan RCY JAC 2007"]
["KATG","A221G","D74G",null,"Chan RCY JAC 2007"]
["KATG","G252A","M84I",null,"Chan RCY JAC 2007"]
["KATG","A253C","T85P",null,"Gagneux S PLOS Path 2006"]
["KATG","A263G","Q88R",null,"Marttila HJ AAC 1998","PMID: 9736581"]
["KATG","G270A","W90STOP",null,"Cockerill FR JID 1995"]
["KATG","T271C","T91R",null,"Ramaswamy SV AAC 2003","10.1128/AAC.47.4.1241-1250.2003 "]
["KATG","A281G","D94G",null,"Gagneux S PLOS Path 2006"]
["KATG","A281C","D94A",null,"Gagneux S PLOS Path 2006"]
["KATG","G286T","G96C",null,"Chan RCY JAC 2007"]
["KATG","G296A","G99E",null,"Chan RCY JAC 2008"]
["KATG","G311T","R104L",null,"Rouse et al MM 1996","10.1046/j.1365-2958.1996.00133.x"]
["KATG","G311A","R104Q",null,"Gagneux S PLOS Path 2006"]
["KATG","C317T","A106V",null,"Gagneux S PLOS Path 2006"]
["KATG","T319C","W107R",null,"Gagneux S PLOS Path 2006"]
["KATG","A319A","W107R",null,"Gagneux S PLOS Path 2006"]
["KATG","G321A","W107STOP",null,"Baker LV AAC 2005"]
["KATG","C322G","H108D",null,"Rouse et al MM 1996"]
["KATG","CAC322GAA","H108E",null,"Rouse et al MM 1996"]
["KATG","CAC322GAG","H108E",null,"Rouse et al MM 1996"]
["KATG","C324G","H108Q",null,"Rouse DA AAC 1995"]
["KATG","C326T","A109V",null,"Gagneux S PLOS Path 2006"]
["KATG","C329T","A110V ",null,"Wei CJ AAC 2003","10.1128/AAC.47.2.670-675.2003 "]
["KATG","A350C","D117A",null,"Lavender C AAC 2005","10.1128/AAC.49.10.4068-4074.2005 "]
["KATG","GGCGGCGCCGGG358-","GGAG120-",null,"Heym B MolMicro 1995"]
["KATG","G361T","G121C",null,"Gagneux S PLOS Path 2006"]
["KATG","G362T","G121V",null,"Marttila HJ AAC 1998"]
["KATG","+372G","124Frameshift",null,"Ramaswamy SV AAC 2003"]
["KATG","G373T","G125C",null,"Chan RCY JAC 2007"]
["KATG","+373CAT","+125H",null,"Heym B MolMicro 1995"]
["KATG","G378T","M126I",null,"Cockerill FR JID 1995"]
["KATG","G378C","M126I",null,"Cockerill FR JID 1995"]
["KATG","G378A","M126I",null,"Cockerill FR JID 1995"]
["KATG","A380C","Q127P",null,"Chan RCY JAC 2007"]
["KATG","G384C","R128P",null,"Fang Z JCM 1999","PMID: 10074516"]
["KATG","A412C","N138H",null,"Hazbon MH AAC 2006"]
["KATG","A412G","N138D",null,"Hazbon MH AAC 2006"]
["KATG","A413G","N138S",null,"Hazbon MH AAC 2006"]
["KATG","A413C","N138T",null,"Morlock GP AAC 2003","10.1128/AAC.47.12.3799-3805.2003 "]
["KATG","G415C","A139P",null,"Wei CJ AAC 2003"]
["KATG","G419A","S140N",null,"Hazbon MH AAC 2006","10.1128/AAC.00112-06 "]
["KATG","A418G","S140G",null,"Hazbon MH AAC 2006"]
["KATG","C420A","S140R",null,"Hazbon MH AAC 2006"]
["KATG","G423C","L141P",null,"Siddiqi N AAC 2003"]
["KATG","A425C","D142A",null,"Siddiqi N AAC 2003"]
["KATG","A428C","K143T",null,"Gagneux S PLOS Path 2006"]
["KATG","T443C","L148A",null,"Gagneux S PLOS Path 2006"]
["KATG","T443G","L148R",null,"Rouse et al MM 1996"]
["KATG","A464C","Y155S",null,"Marttila HJ AAC 1998"]
["KATG","A464G","Y155C",null,"Gagneux S PLOS Path 2006"]
["KATG","C479T","S160L",null,"Gagneux S PLOS Path 2006"]
["KATG","G484A","A162T",null,"Gagneux S PLOS Path 2006"]
["KATG","G506C","G169A",null,"Cockerill FR JID 1995"]
["KATG","G514A","A172T",null,"Hazbon MH AAC 2006"]
["KATG","C515T","A172V",null,"Chan RCY JAC 2007"]
["KATG","G528A","M176I",null,"Chan RCY JAC 2007"]
["KATG","C539A","T180K",null,"Hazbon MH AAC 2006"]
["KATG","G557T","G186V",null,"Chan RCY JAC 2007"]
["KATG","GG556CA","G186H",null,"Chan RCY JAC 2007"]
["KATG","T571C","W191R",null,"Baker LV AAC 2005"]
["KATG","G572-","191Frameshift",null,"Chan RCY JAC 2007"]
["KATG","G583A","E195K",null,"Morlock GP AAC 2003"]
["KATG","G594A","W198STOP",null,"Morlock GP AAC 2003"]
["KATG","A598T","K200STOP",null,"Morlock GP AAC 2003"]
["KATG","C654A","N218K",null,"Morlock GP AAC 2003"]
["KATG","C670G","Q224E",null,"Cockerill FR JID 1995"]
["KATG","A686T","Y229F",null,"Ghiladi RA J Am Chem Soc 2005 "]
["KATG","T689C","V230A",null,"Chan RCY JAC 2007"]
["KATG","G701A","G234E",null,"Baker LV AAC 2005"]
["KATG","G700A","G234R",null,"Chan RCY JAC 2007"]
["KATG","A707C","N236T",null,"Chan RCY JAC 2007"]
["KATG","C714G","N238K",null,"Baker LV AAC 2005"]
["KATG","C723G","G241P",null,"Baker LV AAC 2005"]
["KATG","G727T","A243S",null,"Cockerill FR JID 1995"]
["KATG","C745T","R249C",null,"Ramaswamy SV J Med Micro 2004"]
["KATG","C752T","T251M",null,"Gagneux S PLOS Path 2006"]
["KATG","T754C","F252L",null,"Gagneux S PLOS Path 2006"]
["KATG","T770C","M257T",null,"Siddiqi N AAC 2003"]
["KATG","G771T","M257I",null,"Lavender C AAC 2005"]
["KATG","A773G","N258S",null,"Cockerill FR JID 1995"]
["KATG","C785G","T262R",null,"Rouse DA AAC 1995"]
["KATG","G790A","A264T",null,"Cockerill FR JID 1995"]
["KATG","G803-","268Frameshift",null,"Chan RCY JAC 2007"]
["KATG","A820G","T275A",null,"Pretorius GS AAC 1995"]
["KATG","A823C","T275P",null,"Heym B MolMicro 1995"]
["KATG","A823T","T275S",null,"Ramaswamy SV J Med Micro 2004"]
["KATG","G836A","G279D","High Confidence","Morlock GP AAC 2003"]
["KATG","CG839AT","P280H",null,"Gagneux S PLOS Path 2006"]
["KATG","CG839AC","P280H",null,"Gagneux S PLOS Path 2006"]
["KATG","C842T","A281V",null,"Cockerill FR JID 1995"]
["KATG","G854A","G285D",null,"Abe C JCM 2008","10.1128/JCM.00561-08 "]
["KATG","G867C","E289D",null,"Chan RCY JAC 2007"]
["KATG","G871C","A291P",null,"Fang Z JCM 1999"]
["KATG","A884C","Q295P",null,"Siddiqi N AAC 2003"]
["KATG","G890T","G297V",null,"Siddiqi N AAC 2003"]
["KATG","G895T","G299C",null,"Chan RCY JAC 2007"]
["KATG","G896C","G299A",null,"Huang WL JCM 2009","10.1128/JCM.02499-08 "]
["KATG","G897A","G299STOP",null,"Lee ASG AAC 1999","PMID: 10428945"]
["KATG","T898G","W300G",null,"Marttila HJ AAC 1996"]
["KATG","+901T","301Frameshift",null,"Gagneux S PLOS Path 2006"]
["KATG","C906G","S302R",null,"Cockerill FR JID 1995"]
["KATG","A911C","Y304S",null,"Bolotin S JAC 2009","10.1093/jac/dkp183"]
["KATG","G913C","G305A",null,"Bostanabad SZ Tuberk Torak 2007","10.4103/0255-0857.40528"]
["KATG","G919C","G307R",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","G920C","G307A",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","G920A","G307E",null,"Ramaswamy SV J Med Micro 2004"]
["KATG","A922C","T308P",null,"Khadka DK Southest Asian J Trop Med Public Health 2007","PMID: 17539290"]
["KATG","G926T","G309C",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","G926C","G309S",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","G926A","G309D",null,"Kim SY Diagn Micro Inf Dis 2003","10.1016/S0732-8893(03)00132-9"]
["KATG","GT926TC","G309F",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","A928-","310Frameshift",null,"Huang WL JCM 2009"]
["KATG","G931T","D311Y",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","GA931TC","D311F",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","A932G","G311G",null,"Chan RCY JAC 2007"]
["KATG","C933G","D311E",null,"Zenteno-Cuevas R MemInstOswaldCruz 2009","PMID: 19547874"]
["KATG","C941A","S314N",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","C942G","S314T",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","A943C","S315R",null,"Haas WA AAC 1997","PMID: 9210694"]
["KATG","AGC943CTA","S315L",null,"Marttila HJ AAC 1996"]
["KATG","A943G","S315G",null,"Marttila HJ AAC 1996"]
["KATG","G944C","S315T","High Confidence","Musser JM JID 1996"]
["KATG","G944T","S315I","High Confidence","Haas WA AAC 1997"]
["KATG","G944A","S315N","High Confidence","Haas WA AAC 1997"]
["KATG","GC944CA","S315T","High Confidence","Heym B MolMicro 1995"]
["KATG","GC944CG","S315T","High Confidence","Marttila HJ AAC 1996"]
["KATG","C945A","S315R","High Confidence","Lipin MY CMI 2007"]
["KATG","C945G","S315R","High Confidence","Hazbon MH AAC 2006"]
["KATG","G946A","G316S",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","G947A","G316D",null,"Hazbon MH AAC 2006"]
["KATG","A949C","I317L",null,"Chan RCY JAC 2007"]
["KATG","AG953TA","G318V",null,"Zenteno-Cuevas R MemInstOswaldCruz 2009"]
["KATG","T961C","W321R",null,"Chan RCY JAC 2007"]
["KATG","G962A","W321STOP",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","G962T","W321L",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","GG962CC","W321S",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","G963T","W321C",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","A970C","T324P"]
["KATG","T982G","W328G",null,"Musser JM JID 1996","10.1093/infdis/173.1.196"]
["KATG","G983T","W328L",null,"Haas WA AAC 1997"]
["KATG","G983C","W328S",null,"Boonaiam S CMI 2009","10.1111/j.1469-0691.2009.02838.x"]
["KATG","G984C","W328C",null,"Haas WA AAC 1997"]
["KATG","G984T","W328C",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","A991T","S331C",null,"Zenteno-Cuevas R MemInstOswaldCruz 2009"]
["KATG","T1004C","I335T",null,"Rouse DA AAC 1995"]
["KATG","A1003G","I335V",null,"Lipin MY CMI 2007"]
["KATG","T1007G","L336R",null,"Lee ASG AAC 1999"]
["KATG","A1010T","Y337F",null,"Cockerill FR JID 1995"]
["KATG","A1010G","Y337C",null,"Cockerill FR JID 1995"]
["KATG","G1022C","W341S",null,"Morlock GP AAC 2003"]
["KATG","A1034C","K345T",null,"Gagneux S PLOS Path 2006"]
["KATG","G1037-","346Frameshift",null,"Chan RCY JAC 2007"]
["KATG","G1048A","A350T",null,"Rouse et al MM 1996"]
["KATG","G1048A","A350S",null,"Rouse DA AAC 1995"]
["KATG","C1054T","Q352STOP",null,"Boonaiam S CMI 2009"]
["KATG","G1069C","D357H",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","G1069A","D357N",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","C1082A","A361D",null,"Huang WL JCM 2009"]
["KATG","T1091-","364Frameshift",null,"Huang WL JCM 2009"]
["KATG","T1133C","L378P",null,"Huang WL JCM 2009"]
["KATG","C1136T","A379V",null,"Huang WL JCM 2009"]
["KATG","C1139T","T380I",null,"Chan RCY JAC 2007"]
["KATG","A1142G","D381G",null,"Rouse et al MM 1996"]
["KATG","T1151G","L384R",null,"Gagneux S PLOS Path 2006"]
["KATG","C1169T","T390I",null,"Chan RCY JAC 2007"]
["KATG","+1170CTA","+390L",null,"Siddiqi N AAC 2002"]
["KATG","T1178A","I393N",null,"Siddiqi N AAC 2002"]
["KATG","A1180G","T394A",null,"Gagneux S PLOS Path 2006"]
["KATG","G1191A","W397STOP",null," Hazbon MH AAC 2006"]
["KATG","C1203-","401Frameshift",null,"Huang WL JCM 2009"]
["KATG","GC1225CG","A409R",null,"Pretorius GS AAC 1995"]
["KATG","C1226A","A409D",null,"Chan RCY JAC 2007"]
["KATG","T1237C","Y413H",null,"Huang WL JCM 2009"]
["KATG","G1242C","K414N",null,"Bolotin S JAC 2009"]
["KATG","G1253T","R418L",null,"Ghiladi RA J Am Chem Soc 2005 ","10.1021/ja054366t"]
["KATG","G1253A","R418Q",null,"Mo L Microb Drug Res 2004 ","10.1089/mdr.2004.10.269."]
["KATG","G1255C","D419H",null,"Huang WL JCM 2009"]
["KATG","C1271A","A424E",null,"Cockerill FR JID 1995"]
["KATG","C1271T","A424V",null,"Cockerill FR JID 1995"]
["KATG","C1285T","P429S",null,"Cockerill FR JID 1995"]
["KATG","C1300T","Q434STOP",null,"Ramaswamy SV AAC 2003"]
["KATG","+1329A","438Frameshift",null,"Zhang M J Clin Microb 2005","10.1128/JCM.43.11.5477-5482.2005 "]
["KATG","G1330A","A444T",null,"Cockerill FR JID 1995"]
["KATG","C1345T","L449F",null,"Doustdar F MDR 2008","10.1089/mdr.2008.0842"]
["KATG","GAG1360CGA","E454R",null,"Bostanabad SZ Tuberk Torak 2007"]
["KATG","G1370T","S457I",null,"Bolotin S JAC 2009"]
["KATG","T1385C","I462T",null,"Cockerill FR JID 1995"]
["KATG","G1389T","R463L",null,"Heym B MolMicro 1995"]
["KATG","G1431A","W477STOP",null,"Heym B MolMicro 1995"]
["KATG","C1450A","R484S",null,"Baker LV AAC 2005"]
["KATG","G1454T","G485V",null,"Baker LV AAC 2005"]
["KATG","G1464C","K488N",null,"Marttila HJ AAC 1996"]
["KATG","C1469T","R490C",null,"Baker LV AAC 2005"]
["KATG","G1471T","G491C",null,"Lavender C AAC 2005"]
["KATG","A1506T","Q502H",null,"Marttila HJ AAC 1996"]
["KATG","G1513C","W505S",null,"Abe C JCM 2008"]
["KATG","T1512C","W505R",null,"Cockerill FR JID 1995"]
["KATG","C1543T","R515C",null,"Zhang M J Clin Microb 2005"]
["KATG","+1559TGCAGCCACAAGTCGGGTGGGAGGTCAACGACCCCGACGGGGATCTGCGCAAGGTCATTCGCAC","521Frameshift",null,"Zhang M J Clin Microb 2005"]
["KATG","A1574C","Q525P",null,"Marttila HJ AAC 1996"]
["KATG","A1585G","N529D",null,"Ramaswamy SV AAC 2003"]
["KATG","C1649A","A550D",null,"Cockerill FR JID 1995"]
["KATG","C1652G","A551G",null,"Marttila HJ AAC 1996"]
["KATG","C1667-","556Frameshift",null,"Hazbon MH AAC 2006"]
["KATG","T1700C","F567S",null,"Hazbon MH AAC 2006"]
["KATG","G1717A","D573N",null,"Gagneux S PLOS Path 2006"]
["KATG","C1721A","A574E",null,"Hazbon MH AAC 2006"]
["KATG","C1721T","A574V",null,"Hazbon MH AAC 2006"]
["KATG","C1759A","L587M",null,"Heym B MolMicro 1995"]
["KATG","T1760C","L587P",null,"Marttila HJ AAC 1996"]
["KATG","C1765A","P589T",null,"Cockerill FR JID 1995"]
["KATG","G1778A","G593D",null,"Cockerill FR JID 1995"]
["KATG","G1819A","G607K",null,"Gagneux S PLOS Path 2006"]
["KATG","G1827T","M609I",null,"Cockerill FR JID 1995"]
["KATG","G1827C","M609I",null,"Cockerill FR JID 1995"]
["KATG","G1827A","M609I",null,"Cockerill FR JID 1995"]
["KATG","+1849AC","617Frameshift",null,"Marttila HJ AAC 1996"]
["KATG","T1856C","L619P",null,"Wei CJ AAC 2003"]
["KATG","G1888A","G629S",null,"Rouse DA AAC 1995"]
["KATG","C1900T","L634F",null,"Wei CJ AAC 2003"]
["KATG","C1907A","A636E",null,"Gagneux S PLOS Path 2006"]
["KATG","T1958C","L653P",null,"Gagneux S PLOS Path 2006"]
["KATG","G2053C","G685R",null,"Zhang M J Clin Microb 2005"]
["KATG","A2084C","D695A",null,"Pretorius GS AAC 1995"]
["KATG","G2096A","G699Q",null,"Baker LV AAC 2005"]
["KATG","T2098C","S700P",null,"Marttila HJ AAC 1996"]
["KATG","T2129C","V710A",null,"Marttila HJ AAC 1996"]
["KATG","G2137C","A713P",null,"Hazbon MH AAC 2006"]
["KATG","A2150C","Q717P",null,"Hazbon MH AAC 2006"]
["KATG","G2146C","A716P",null,"Rouse DA AAC 1995"]
["KATG","C2180A","A727D",null,"Ramaswamy SV J Med Micro 2004"]
["KATG","G2184T","W728C",null,"Gagneux S PLOS Path 2006"]
["KATG","G2184C","W728C",null,"Gagneux S PLOS Path 2006"]
["KATG","GAC2203-","D735-",null,"Gagneux S PLOS Path 2006"]
["KATG","G2203A","D735N",null,"Gagneux S PLOS Path 2006"]
["KATG","A2204C","D735A",null,"Wei CJ AAC 2003"]

{"sheet":"GYR","index":3,"n_rows":18,"n_cols":13,"rows_kept":18,"cut":false,"hidden":false,"merged":[]}
["Gene","Nucleotide","Codon H37Rv","Confidence","Primary reference","doi/PMID",null,"Gene","Nucleotide","Codon H37Rv","Confidence","Primary reference","doi/PMID"]
["GYRA","G220T","A74S"," ","Shi R JCM 2006","10.1128/JCM.01916-06 ",null,"GYRB","C1453T","R485C"," ","Feuerriegel S AAC 2009","10.1128/AAC.00079-09 "]
["GYRA","A238G","T80A"," ","Aubry A AAC 2006","10.1128/AAC.50.1.104-112.2006 ",null,"GYRB","C1457T","S486F"," ","Aubry A AAC 2006","10.1128/AAC.50.1.104-112.2006 "]
["GYRA","G263C","G88A"," ","Matrat S AAC 2006 Dec","10.1128/AAC.00714-06 ",null,"GYRB","G1498C","D500H"," ","Duong DA AAC 2009","10.1128/AAC.00541-09 "]
["GYRA","G265A","D89N"," ","Von Groll A AAC 2009","10.1128/AAC.00714-06 ",null,"GYRB","G1498A","D500N"," ","Pitaksajjakul P Southeast Asian J Trop Med Public Health 2005","PMID: 16438215"]
["GYRA","C269T","A90V"," ","Takiff HE AAC 1994","PMID: 8031045",null,"GYRB","A1499C","D500A","High Confidence","Duong DA AAC 2009","10.1128/AAC.00541-09 "]
["GYRA","C269G","A90G"," ","Aubry A AAC 2006","10.1128/AAC.50.1.104-112.2006 ",null,"GYRB","G1526C","G509A"," ","Duong DA AAC 2009","10.1128/AAC.00541-09 "]
["GYRA","T271C","S91P","High Confidence","Takiff HE AAC 1994","PMID: 8031045",null,"GYRB","A1598C","D533A"," ","Lee AS Int J Infect Dis 2002","PMID: 12044302"]
["GYRA","G280A","D94N","High Confidence","Takiff HE AAC 1994","PMID: 8031045",null,"GYRB","A1612G","N538D","High Confidence","Aubry A AAC 2006","10.1128/AAC.50.1.104-112.2006 "]
["GYRA","G280C","D94H","High Confidence","Takiff HE AAC 1994","PMID: 8031045",null,"GYRB","A1613C","N538T","High Confidence","Duong DA AAC 2009","10.1128/AAC.00541-09 "]
["GYRA","GA280TC","D94F"," ","Bravao LTC JCM 2009","10.1128/JCM.01229-09 ",null,"GYRB","C1614A","N538K"," ","Mokrousov I AAC 2008","10.1128/AAC.00036-08 "]
["GYRA","G280T","D94Y","High Confidence","Takiff HE AAC 1994","PMID: 8031045",null,"GYRB","A1615C","T539P","High Confidence","Duong DA AAC 2009","10.1128/AAC.00541-09 "]
["GYRA","A281G","D94G","High Confidence","Takiff HE AAC 1994","PMID: 8031045",null,"GYRB","A1619T","E540V","High Confidence","Duong DA AAC 2009","10.1128/AAC.00541-09 "]
["GYRA","A281C","D94A","High Confidence","Takiff HE AAC 1994","PMID: 8031045",null,"GYRB","A1620T","E540D"," ","Duong DA AAC 2009","10.1128/AAC.00541-09 "]
["GYRA","A281T","D94V"," ","Sulochana S J Chemother 2007","10.1179/joc.2007.19.2.166",null,"GYRB","G1627A","A543T"," ","Mokrousov I AAC 2008","10.1128/AAC.00036-08 "]
["GYRA","G284C","S95T","Polymorphism ","Kapur V Arch PathLabMEd 1995","PMID: 7848059",null,"GYRB","C1628T","A543V"," ","Mokrousov I AAC 2008","10.1128/AAC.00036-08 "]
["GYRA","C305A","P102H","High Confidence","Kam KM Microb Drug Res 2006","10.1089/mdr.2006.12.7",null,"GYRB","A1731T","Q577H"," ","Mokrousov I AAC 2008","10.1128/AAC.00036-08 "]
["GYRA","C325G","L109V"," ","Sulochana S J Chemother 2007","10.1179/joc.2007.19.2.166"]

{"sheet":"RRS","index":4,"n_rows":8,"n_cols":5,"rows_kept":8,"cut":false,"hidden":false,"merged":[]}
["Nucleotide","Codon H37Rv","Confidence","Primary reference","doi/PMID"]
["A514C",null,"Associated with A1401G","Kruuner A AAC 2003 ","10.1128/AAC.47.9.2971-2973.2003 "]
["C517T",null,"Associated with A1401G","Kruuner A AAC 2003 ","10.1128/AAC.47.9.2971-2973.2003 "]
["T1239C",null,"Associated with A1401G","Maus C AAC 2005  ","10.1128/AAC.49.8.3192-3197.2005 "]
["A1401G",null,"High Confidence","Sander P MolMicro 1996","10.1046/j.1365-2958.1996.01532.x"]
["C1402T",null,"High Confidence","Suzuki Y JCM 1998","PMID: 9574680"]
["C1402A",null," ","Suzuki Y JCM 1998","PMID: 9574680"]
["G1484T",null,"High Confidence","Suzuki Y JCM 1998","PMID: 9574680"]

{"sheet":"REVIEWS","index":5,"n_rows":120,"n_cols":2,"rows_kept":120,"cut":false,"hidden":false,"merged":[]}
["Review reference","doi/PMID"]
["O'Sullivan DM JAC 2005","10.1093/jac/dki069"]
["Ramaswamy S Musser JM Tubercle lung Dis 1998","PMID:10645439"]
["Gheorghiu SB PlosOne 2012","10.1371/journal.pone.0033275."]
["Maruri F JAC 2012","10.1093/jac/dkr566."]
["Hazbon MH AAC 2006","10.1128/AAC.00112-06 "]
["Musser Clin Microb Rev 1995","PMID: 8665467 "]
{"$rows_empty":74}
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
[]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
[]
[]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
["O'Sullivan DM JAntiChemo 2005"]
[]
[]
[]
["O'Sullivan DM JAntiChemo 2005"]
[]
[]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
[]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
[]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
["Ramaswamy S Musser JM Tubercle lung Dis 1998"]
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["O'Sullivan DM JAntiChemo 2005"]