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{"sheet":"Table S1","index":0,"n_rows":1479,"n_cols":17,"rows_kept":1479,"cut":false,"hidden":false,"merged":[[0,0,0,14]]}
["Table S1. Structures used in the analysis were queried from the PDB and NDB on 2010-03-10. \"Parent structure\" is ID of the closest structure, if different from \"PDB ID\", structure was considered redundant and not used in the analysis."]
[]
["PDB ID","parent structure","accepted for analysis","Resolution","MolProbity Score","MolProbity % Rank","RR-factor","NDB ID","PubMed","% solv","Authors","Journal","vol.","page","year","Title of the paper"]
["1N6Q","1T03","n",3,4,11,0.25,"PD0364",12456667,75,"Sarafianos, S.G., Clark Jr., A.D., Das, K., Tuske, S., Birktoft, J.J., Ilankumaran, I., Ramesha, A.R., Sayer, J.M., Jerina, D.M., Boyer, P.L., Hughes, S.H., Arnold, E.","EMBO J.",21,6614,2002,"Structures of HIV-1 Reverse Transcriptase with Pre- and Post-translocation AZTMP-terminated DNA"]
["1T03","1T03","y",3.1,3.8,25,0.26,"PD0536",15107837,71,"Tuske, S., Sarafianos, S.G., Clark Jr., A.D., Ding, J., Naeger, L.K., White, K.L., Miller, M.D., Gibbs, C.S., Boyer, P.L., Clark, P., Wang, G., Gaffney, B.L., Jones, R.A., Jerina, D.M., Hughes, S.H., Arnold, E.","Nature SMB",11,469,2004,"Structure of HIV-1 RT-DNA complexes before and after incorporation of the anti-AIDS drug tenofovir"]
["3GV7","3GV8","n",2.2000000000000002,2.59,44,0.21,"PD1281",19440206,54,"Kirouac, K.N., Ling, H.","EMBO J.",28,1644,2009,"Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota"]
["3GV8","3GV8","y",2,2.52,33,0.22,"PD1282",19440206,55,"Kirouac, K.N., Ling, H.","EMBO J.",28,1644,2009,"Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota"]
["1SUZ","1SUZ","y",1.8,2.4900000000000002,24,0.2,"PD0530",15170321,39,"Horton, N.C., Perona, J.J.","Biochemistry",43,6841,2004,"DNA Cleavage by EcoRV Endonuclease: Two Metal Ions in Three Metal Ion Binding Sites."]
["1SX8","1SUZ","n",2.2000000000000002,2.97,16,0.21,"PD0532",15170321,40,"Horton, N.C., Perona, J.J.","Biochemistry",43,6841,2004,"DNA Cleavage by EcoRV Endonuclease: Two Metal Ions in Three Metal Ion Binding Sites"]
["2ISZ","2ISZ","y",2.4,2.48,70,0.2,"PD0884",17209554,56,"Wisedchaisri, G., Chou, C.J., Wu, M., Roach, C., Rice, A.E., Holmes, R.K., Beeson, C., Hol, W.G.","Biochemistry",46,436,2007,"Crystal structures, metal activation, and DNA-binding properties of two-domain IdeR from Mycobacterium tuberculosis"]
["2IT0","2ISZ","n",2.6,2.61,76,0.23,"PD0885",17209554,59,"Wisedchaisri, G., Chou, C.J., Wu, M., Roach, C., Rice, A.E., Holmes, R.K., Beeson, C., Hol, W.G.","Biochemistry",46,436,2007,"Crystal structures, metal activation, and DNA-binding properties of two-domain IdeR from Mycobacterium tuberculosis"]
["1UA0","1UA1","n",2.1,2.4700000000000002,44,0.21,"PD0585",15385534,56,"Hsu, G.W., Kiefer, J.R., Burnouf, D., Becherel, O.J., Fuchs, R.P.P., Beese, L.S.","J.Biol.Chem.",279,50280,2004,"Observing translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymerase"]
["1UA1","1UA1","y",2,1.91,80,0.22,"PD0586",15385534,55,"Hsu, G.W., Kiefer, J.R., Becherel, O.J., Fuchs, R.P.P., Beese, L.S.","J.Biol.Chem.",279,50280,2004,"Observing translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymerase"]
["2FJW","2FJX","n",2,2.68,20,0.24,"PD0757",16771498,55,"Goodwin, K.D., Lewis, M.A., Tanious, F.A., Tidwell, R.R., Wilson, W.D., Georgiadis, M.M., Long, E.C.","J.Am.Chem.Soc.",128,7846,2006,"A High-Throughput, High-Resolution Strategy for the Study of Site-Selective DNA Binding Agents: Analysis of a 'Highly Twisted' Benzimidazole-Diamidine."]
["2FJX","2FJX","y",1.8,2.48,25,0.23,"PD0758",16771498,55,"Goodwin, K.D., Lewis, M.A., Tanious, F.A., Tidwell, R.R., Wilson, W.D., Georgiadis, M.M., Long, E.C.","J.Am.Chem.Soc.",128,7846,2006,"A High-Throughput, High-Resolution Strategy for the Study of Site-Selective DNA Binding Agents: Analysis of a 'Highly Twisted' Benzimidazole-Diamidine."]
["3G6P","3G6R","n",2,2.82,15,0.22,"PD1231",19372434,65,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3G6R","3G6R","y",2.2999999999999998,2.5499999999999998,57,0.19,"PD1233",19372434,66,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["1SA3","1SA3","y",2,2.0699999999999998,66,0.23,"PD0515",15341737,54,"Xu, Q.S., Kucera, R.B., Roberts, R.J., Guo, H.C.","STRUCTURE",12,1741,2004,"An Asymmetric Complex of Restriction Endonuclease MspI on Its Palindromic DNA Recognition Site."]
["1YFI","1SA3","n",2.7,2.5,86,0.23,"PD0621",16195548,52,"Xu, Q.S., Roberts, R.J., Guo, H.-C.","Protein Sci.",14,2590,2005,"Two crystal forms of the restriction enzyme MspI-DNA complex show the same novel structure."]
["1R0N","1R0O","n",2.6,3.58,13,0.23,"PD0470",14592980,57,"Devarakonda, S., Harp, J.M., Kim, Y., Ozyhar, A., Rastinejad, F.","EMBO J.",22,5827,2003,"Structure of the heterodimeric Ecdysone Receptor DNA-binding complex"]
["1R0O","1R0O","y",2.2000000000000002,3.26,9,0.23,"PD0471",14592980,51,"Devarakonda, S., Harp, J.M., Kim, Y., Ozyhar, A., Rastinejad, F.","EMBO J.",22,5827,2003,"Structure of the Heterodimeric Ecdysone Receptor DNA-binding Complex"]
["3G2D","3G2D","y",2.2999999999999998,2.46,64,0.22,"PD1224",null,48,"Lakomek, K., Dickmanns, A., Ciirdaeva, E., Schomacher, L., Fritz, H.-J., Ficner, R.","TBP",null,null,null,"3'- 5' exo competes with 2'-desoxyuridine endonuclease activity: Structures of the archaeal ExoIII homologue Mth0212 without and in complex with different substrate DNAs"]
["3G38","3G2D","n",3,3.38,47,0.26,"PD1226",null,52,"Lakomek, K., Dickmanns, A., Ciirdaeva, E., Schomacher, L., Fritz, H.-J., Ficner, R.","TBP",null,null,null,"3'- 5' exo competes with 2'-desoxyuridine endonuclease activity: Structures of the archaeal ExoIII homologue Mth0212 without and in complex with different substrate DNAs"]
["1MTL","1MWI","n",2.8,3.11,56,0.28000000000000003,"PD0346",9699633,61,"Barrett, T.E., Savva, R., Barlow, T., Brown, T., Jiricny, J., Pearl, L.H.","Nat.Struct.Biol.",5,697,1998,"Structure of a DNA base-excision product resembling a cisplatin inter-strand adduct."]
["1MWI","1MWI","y",2.4,2.37,74,0.25,"PD0353",9489705,52,"Barrett, T.E., Savva, R., Panayotou, G., Barlow, T., Brown, T., Jiricny, J., Pearl, L.H.","Cell",92,117,1998,"Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions."]
["2ADY","2AHI","n",2.5,2.98,39,0.17,"PD0694",16793544,46,"Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shaulov, L., Haran, T.E., Shakked, Z.","Mol.Cell",22,741,2006,"Structural Basis of DNA Recognition by p53 Tetramers"]
["2AHI","2AHI","y",1.9,1.81,80,0.17,"PD0696",16793544,48,"Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shaulov, L., Haran, T.E., Shakked, Z.","Mol.Cell",22,741,2006,"Structural Basis of DNA Recognition by p53 Tetramers"]
["1XSL","1XSL","y",2.2999999999999998,1.87,94,0.21,"PD0604",15608652,58,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Kunkel, T.A., Pedersen, L.C.","Nature SMB",12,97,2005,"A closed conformation for the Pol lambda catalytic cycle."]
["2GWS","1XSL","n",2.4,1.92,95,0.21,"PD0806",16807316,57,"Picher, A.J., Garcia-Diaz, M., Bebenek, K., Pedersen, L.C., Kunkel, T.A., Blanco, L.","NAR",34,3259,2006,"Promiscuous mismatch extension by human DNA polymerase lambda."]
["2PFN","2PFN","y",1.9,1.74,85,0.21,"PD0989",17475573,54,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Pedersen, L.C., Kunkel, T.A.","DNA Repair",6,1333,2007,"Role of the catalytic metal during polymerization by DNA polymerase lambda."]
["2PFO","2PFN","n",2,1.9,81,0.22,"PD0990",17475573,55,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Pedersen, L.C., Kunkel, T.A.","DNA Repair",6,1333,2007,"Role of the catalytic metal during polymerization by DNA polymerase lambda."]
["2PFP","2PFP","y",2.1,1.78,91,0.21,"PD0991",17475573,56,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Pedersen, L.C., Kunkel, T.A.","DNA Repair",6,1333,2007,"Role of the catalytic metal during polymerization by DNA polymerase lambda."]
["2PFQ","2PFP","n",2.1,2.84,20,0.26,"PD0992",17475573,56,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Pedersen, L.C., Kunkel, T.A.","DNA Repair",6,1333,2007,"Role of the catalytic metal during polymerization by DNA polymerase lambda."]
["2ZKD","2ZKD","y",1.6,1.42,93,0.16,"PD1096",18772891,50,"Arita, K., Ariyoshi, M., Tochio, H., Nakamura, Y., Shirakawa, M.","Nature",455,818,2008,"Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism"]
["2ZKE","2ZKD","n",2.6,2.42,86,0.22,"PD1097",18772891,55,"Arita, K., Ariyoshi, M., Tochio, H., Nakamura, Y., Shirakawa, M.","Nature",455,818,2008,"Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism"]
["3GX4","3GYH","n",2.7,4.17,2,0.23,"PD1292",19516334,57,"Tubbs, J.L., Latypov, V., Kanugula, S., Butt, A., Melikishvili, M., Kraehenbuehl, R., Fleck, O., Marriott, A., Watson, A.J., Verbeek, B., McGown, G., Thorncroft, M., Santibanez-Koref, M.F., Millington, C., Arvai, A.S., Kroeger, M.D., Peterson, L.A., Williams, D.M., Fried, M.G., Margison, G.P., Pegg, A.E., Tainer, J.A.","Nature",459,808,2009,"Flipping of alkylated DNA damage bridges base and nucleotide excision repair."]
["3GYH","3GYH","y",2.8,4,7,0.24,"PD1293",19516334,57,"Tubbs, J.L., Latypov, V., Kanugula, S., Butt, A., Melikishvili, M., Kraehenbuehl, R., Fleck, O., Marriott, A., Watson, A.J., Verbeek, B., McGown, G., Thorncroft, M., Santibanez-Koref, M.F., Millington, C., Arvai, A.S., Kroeger, M.D., Peterson, L.A., Williams, D.M., Fried, M.G., Margison, G.P., Pegg, A.E., Tainer, J.A.","Nature",459,808,2009,"Flipping of alkylated DNA damage bridges base and nucleotide excision repair."]
["1U49","1U4B","n",2.2000000000000002,2.15,73,0.21,"PD0582",15322558,55,"Hsu, G.W., Ober, M., Carell, T., Beese, L.S.","Nature",431,217,2004,"Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase."]
["1U4B","1U4B","y",1.6,1.73,73,0.21,"PD0583",15322558,54,"Hsu, G.W., Ober, M., Carell, T., Beese, L.S.","Nature",431,217,2004,"Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase."]
["1Y6G","1YA6","n",2.8,3.37,36,0.22,"PD0617",16081100,51,"Lariviere, L., Sommer, N., Morera, S.","J.Mol.Biol.",352,139,2005,"Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase."]
["1YA6","1YA6","y",2.4,2.98,32,0.23,"PD0620",16081100,50,"Lariviere, L., Sommer, N., Morera, S.","J.Mol.Biol.",352,139,2005,"Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase."]
["1F4K","1F4K","y",2.5,2.89,46,0.27,"PD0167",11224562,58,"Wilce, J.A., Vivian, J.P., Hastings, A.F., Otting, G., Folmer, R.H., Duggin, I.G., Wake, R.G., Wilce, M.C.","Nat.Struct.Biol.",8,206,2001,"Structure of the RTP-DNA complex and the mechanism of polar replication fork arrest"]
["2DPD","1F4K","n",3.2,3.47,53,0.24,"PD0804",null,68,"Vivian, J.P., Wilce, J., Wilce, M.C.J.","TBP",null,null,null,"Crystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-site"]
["3FC3","3GOX","n",1.8,1.55,91,0.18,"PD1209",19380375,51,"Sokolowska, M., Czapinska, H., Bochtler, M.","NAR",37,3799,2009,"Crystal structure of the beta beta alpha-Me type II restriction endonuclease Hpy99I with target DNA."]
["3GOX","3GOX","y",1.5,1.43,89,0.17,"PD1272",19380375,52,"Sokolowska, M., Czapinska, H., Bochtler, M.","NAR",37,3799,2009,"Crystal structure of the beta beta alpha-Me type II restriction endonuclease Hpy99I with target DNA."]
["3BTY","3BTY","y",2.4,1.68,98,0.23,"PD1129",18432238,61,"Yang, C.G., Yi, C., Duguid, E.M., Sullivan, C.T., Jian, X., Rice, P.A., He, C.","Nature",452,961,2008,"Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA."]
["3BUC","3BTY","n",2.6,2.31,90,0.25,"PD1074",18432238,62,"Yang, C.G., Yi, C., Duguid, E.M., Sullivan, C.T., Jian, X., Rice, P.A., He, C.","Nature",452,961,2008,"Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA."]
["2PI4","2PI5","n",2.5,4.18,1,0.27,"PD1004",17512007,59,"Kennedy, W.P., Momand, J.R., Yin, Y.W.","J.Mol.Biol.",370,256,2007,"Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase."]
["2PI5","2PI5","y",2.9,3.52,31,0.25,"PD1005",17512007,59,"Kennedy, W.P., Momand, J.R., Yin, Y.W.","J.Mol.Biol.",370,256,2007,"Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase."]
["2O8B","2O8B","y",2.8,2.06,98,0.25,"PD0951",17531815,61,"Warren, J.J., Pohlhaus, T.J., Changela, A., Iyer, R.R., Modrich, P.L., Beese, L.S.","Mol.Cell",26,579,2007,"Structure of the Human MutSalpha DNA Lesion Recognition Complex."]
["2O8D","2O8B","n",3,2,99,0.24,"PD0953",17531815,61,"Warren, J.J., Pohlhaus, T.J., Changela, A., Iyer, R.R., Modrich, P.L., Beese, L.S.","Mol.Cell",26,579,2007,"Structure of the Human MutSalpha DNA Lesion Recognition Complex."]
["1XHU","1XHV","n",3,3.71,22,0.19,"PD0594",15476804,56,"Etzkorn, C., Horton, N.C.","J.Mol.Biol.",343,833,2004,"Mechanistic Insights from the Structures of HincII Bound to Cognate DNA Cleaved from Addition of Mg(2+) and Mn(2+)"]
["1XHV","1XHV","y",2.5,3.05,34,0.2,"PD0595",15476804,57,"Etzkorn, C., Horton, N.C.","J.Mol.Biol.",343,833,2004,"Mechanistic Insights from the Structures of HincII Bound to Cognate DNA Cleaved from Addition of Mg(2+) and Mn(2+)"]
["2PYJ","2PYJ","y",2,2.0299999999999998,72,0.19,"PD1011",17611604,56,"Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.","EMBO J.",26,3494,2007,"Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases"]
["2PZS","2PYJ","n",2.6,2.5499999999999998,79,0.23,"PD1013",17611604,55,"Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.","EMBO J.",26,3494,2007,"Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases"]
["3EXJ","3EXJ","y",2,2.15,62,0.23,"PD1191",18978813,53,"Malecka, K.A., Ho, W.C., Marmorstein, R.","Oncogene",28,325,2009,"Crystal structure of a p53 core tetramer bound to DNA."]
["3EXL","3EXJ","n",2.2000000000000002,2.4700000000000002,53,0.2,"PD1192",18978813,42,"Malecka, K.A., Ho, W.C., Marmorstein, R.","Oncogene",28,325,2009,"Crystal structure of a p53 core tetramer bound to DNA."]
["3DVO","3DVO","y",1.9,2.0499999999999998,64,0.22,"PD1161",18701646,51,"Dunten, P.W., Little, E.J., Gregory, M.T., Manohar, V.M., Dalton, M., Hough, D., Bitinaite, J., Horton, N.C.","NAR",36,5405,2008,"The structure of SgrAI bound to DNA; recognition of an 8 base pair target."]
["3DW9","3DVO","n",2.2000000000000002,2.63,41,0.18,"PD1162",18701646,47,"Dunten, P.W., Little, E.J., Gregory, M.T., Manohar, V.M., Dalton, M., Hough, D., Bitinaite, J., Horton, N.C.","NAR",36,5405,2008,"The structure of SgrAI bound to DNA; recognition of an 8 base pair target."]
["2O49","2O4A","n",2,2.25,54,0.21,"PD0946",17652321,51,"Yamasaki, K., Akiba, T., Yamasaki, T., Harata, K.","NAR",35,5073,2007,"Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1."]
["2O4A","2O4A","y",1.8,1.85,73,0.25,"PD0947",17652321,55,"Yamasaki, K., Akiba, T., Yamasaki, T., Harata, K.","NAR",35,5073,2007,"Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1."]
["1TW8","1TX3","n",2.8,3.29,41,0.18,"PD0565",15491133,56,"Etzkorn, C., Horton, N.C.","Biochemistry",43,13256,2004,"Ca2+ binding in the active site of HincII: implications for the catalytic mechanism"]
["1TX3","1TX3","y",2.5,2.92,44,0.2,"PD0577",15491133,57,"Etzkorn, C., Horton, N.C.","Biochemistry",43,13256,2004,"Ca2+ binding in the active site of HincII: implications for the catalytic mechanism"]
["1EWQ","1EWQ","y",2.2000000000000002,2.88,24,0.23,"PD0142",11048710,51,"Obmolova, G., Ban, C., Hsieh, P., Yang, W.","Nature",407,703,2000,"Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA."]
["1NNE","1EWQ","n",3.1,3.35,58,0.21,"PD0388",12582174,52,"Alani, E., Lee, J.Y., Schofield, M.J., Kijas, A.W., Hsieh, P., Yang, W.","J.Biol.Chem.",278,16088,2003,"Crystal structure and biochemical analysis of the MutS-ADP-Beryllium Fluoride complex   suggests a conserved mechanism for ATP interactions in mismatch repair"]
["1M3Q","1M3Q","y",1.9,2.23,48,0.24,"PD0332",15610848,57,"Chung, S.J., Verdine, G.L.","Chem.Biol.",11,1643,2004,"Structures of End Products Resulting from Lesion Processing by a DNA Glycosylase/Lyase"]
["1N39","1M3Q","n",2.2000000000000002,2.52,49,0.24,"PD0357",12578369,57,"Norman, D.P., Chung, S.J., Verdine, G.L.","Biochemistry",42,1564,2003,"Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase"]
["1Q3U","1Q3U","y",2.9,3.23,53,0.22,"PD0462",12954782,73,"Ennifar, E., Meyer, J.E.W., Buchholz, F., Stewart, A.F., Suck, D.","NAR",31,5449,2003,"Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation"]
["1Q3V","1Q3U","n",2.9,3.49,33,0.25,"PD0463",12954782,74,"Ennifar, E., Meyer, J.E.W., Buchholz, F., Stewart, A.F., Suck, D.","NAR",31,5449,2003,"Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation"]
["1F4R","1F4R","y",2.4,2.39,76,0.24,"PD0168",11106395,47,"Lau, A.Y., Wyatt, M.D., Glassner, B.J., Samson, L.D., Ellenberger, T.","PNAS",97,13573,2000,"Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG."]
["1F6O","1F4R","n",2.4,2.98,31,0.22,"PD0172",11106395,50,"Lau, A.Y., Wyatt, M.D., Glassner, B.J., Samson, L.D., Ellenberger, T.","PNAS",97,13573,2000,"Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG."]
["3HXO","3HXO","y",2.4,2.37,77,0.23,"NA0063",null,52,"Huang, R.-H., Fremont, D.H., Diener, J.L., Schaub, R.G., Sadler, J.E.","Structure",17,1476,2009,"A Structural Explanation for the Antithrombotic Activity of ARC1172, a DNA Aptamer that Binds von Willebrand Factor Domain A1"]
["3HXQ","3HXO","n",2.7,2.44,89,0.22,"NA0064",null,49,"Huang, R.-H., Fremont, D.H., Diener, J.L., Schaub, R.G., Sadler, J.E.","Structure",17,1476,2009,"A Structural Explanation for the Antithrombotic Activity of ARC1172, a DNA Aptamer that Binds von Willebrand Factor Domain A1"]
["1S0M","1S0M","y",2.7,2.67,78,0.21,"PD0508",14982998,57,"Ling, H., Sayer, J.M., Plosky, B.S., Yagi, H., Boudsocq, F., Woodgate, R., Jerina, D.M., Yang, W.","PNAS",101,2265,2004,"Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a DNA polymerase."]
["2R8G","1S0M","n",2.7,3.17,42,0.21,"PD1039",18563918,52,"Wang, Y., Musser, S.K., Saleh, S., Marnett, L.J., Egli, M., Stone, M.P.","Biochemistry",47,7322,2008,"Insertion of dNTPs opposite the 1,N2-propanodeoxyguanosine adduct by Sulfolobus solfataricus P2 DNA polymerase IV"]
["1YQL","1YQM","n",2.6,2.66,73,0.21,"PD0630",15800616,null,"Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.","Nature",434,612,2005,"Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA."]
["1YQM","1YQM","y",2.5,2.46,78,0.21,"PD0631",15800616,null,"Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.","Nature",434,612,2005,"Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA."]
["1R7M","3C0X","n",2.2999999999999998,2.9,26,0.24,"PD0481",14636596,50,"Moure, C.M., Gimble, F.S., Quiocho, F.A.","J.Mol.Biol.",334,685,2003,"The crystal structure of the gene targeting homing endonuclease I-SceI reveals the origins of its target site specificity"]
["3C0X","3C0X","y",2.2999999999999998,2.72,44,0.26,"PD1076",18424798,49,"Moure, C.M., Gimble, F.S., Quiocho, F.A.","NAR",36,3287,2008,"Crystal structures of I-SceI complexed to nicked DNA substrates: snapshots of intermediates along the DNA cleavage reaction pathway."]
["1R2Y","1R2Z","n",2.2999999999999998,2.2999999999999998,76,0.21,"PD0473",14525999,55,"Fromme, J.C., Verdine, G.L.","J.Biol.Chem.",278,51543,2003,"DNA Lesion Recognition by the Bacterial Repair Enzyme MutM."]
["1R2Z","1R2Z","y",1.6,2,49,0.21,"PD0474",14525999,56,"Fromme, J.C., Verdine, G.L.","J.Biol.Chem.",278,51543,2003,"DNA Lesion Recognition by the Bacterial Repair Enzyme MutM."]
["2ZO0","2ZO1","n",2.2000000000000002,2.11,79,0.22,"PD1133",18772888,61,"Hashimoto, H., Horton, J.R., Zhang, X., Bostick, M., Jacobsen, S.E., Cheng, X.","Nature",455,826,2008,"The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix"]
["2ZO1","2ZO1","y",2,1.87,82,0.22,"PD1134",18772888,50,"Hashimoto, H., Horton, J.R., Zhang, X., Bostick, M., Jacobsen, S.E., Cheng, X.","Nature",455,826,2008,"The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix"]
["1NH2","1NH2","y",1.9,1.63,91,0.2,"PD0369",12972251,null,"Bleichenbacher, M., Tan, S., Richmond, T.J.","J.Mol.Biol.",332,783,2003,"Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes."]
["1YTF","1NH2","n",2.5,2.5499999999999998,72,0.24,"PDT036",8610010,null,"Tan, S., Hunziker, Y., Sargent, D.F., Richmond, T.J.","Nature",381,127,1996,"Crystal structure of a yeast TFIIA/TBP/DNA complex."]
["2R2R","2R2R","y",2.1,2.97,14,0.24,"PD1030",18362349,56,"Goodwin, K.D., Lewis, M.A., Long, E.C., Georgiadis, M.M.","PNAS",105,5052,2008,"Crystal structure of DNA-bound Co(III) bleomycin B2: Insights on intercalation and minor groove binding."]
["2R2S","2R2R","n",2.8,3.42,32,0.23,"PD1031",18362349,57,"Goodwin, K.D., Lewis, M.A., Long, E.C., Georgiadis, M.M.","PNAS",105,5052,2008,"Crystal structure of DNA-bound Co(III) bleomycin B2: Insights on intercalation and minor groove binding."]
["2H7F","2H7G","n",2.7,2.6,81,0.19,"PD0816",16885024,59,"Perry, K., Hwang, Y., Bushman, F.D., Van Duyne, G.D.","Mol.Cell",23,343,2006,"Structural basis for specificity in the poxvirus topoisomerase."]
["2H7G","2H7G","y",1.9,2.4900000000000002,28,0.2,"PD0817",16885024,56,"Perry, K., Hwang, Y., Bushman, F.D., Van Duyne, G.D.","Mol.Cell",23,343,2006,"Structural basis for specificity in the poxvirus topoisomerase."]
["1RXV","1RXW","n",2.5,2.81,52,0.28000000000000003,"PD0501",14718165,57,"Chapados, B.R., Hosfield, D.J., Han, S., Qiu, J., Yelent, B., Shen, B., Tainer, J.A.","Cell",116,39,2004,"Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair"]
["1RXW","1RXW","y",2,2.25,54,0.25,"PD0502",14718165,48,"Chapados, B.R., Hosfield, D.J., Han, S., Qiu, J., Yelent, B., Shen, B., Tainer, J.A.","Cell",116,39,2004,"Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair"]
["2DPI","2DPJ","n",2.2999999999999998,3.32,10,0.23,"PD0807",16819516,57,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Nature SMB",13,619,2006,"Hoogsteen base pair formation promotes synthesis opposite the 1,N(6)-ethenodeoxyadenosine lesion by human DNA polymerase iota."]
["2DPJ","2DPJ","y",2.2999999999999998,3.3,11,0.24,"PD0805",16819516,57,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Nature SMB",13,619,2006,"Hoogsteen base pair formation promotes synthesis opposite the 1,N(6)-ethenodeoxyadenosine lesion by human DNA polymerase iota."]
["2HOF","2HOF","y",2.4,2.39,76,0.24,"PD0838",17573343,58,"Ghosh, K., Guo, F., Van Duyne, G.D.","J.Biol.Chem.",282,24004,2007,"Synapsis of loxP sites by Cre recombinase."]
["2HOI","2HOF","n",2.6,2.12,95,0.22,"PD0839",17573343,59,"Ghosh, K., Guo, F., Van Duyne, G.D.","J.Biol.Chem.",282,24004,2007,"Synapsis of loxP sites by Cre recombinase."]
["1D2I","1D2I","y",1.7,2.1,46,0.18,"PD0153",10655616,47,"Lukacs, C.M., Kucera, R., Schildkraut, I., Aggarwal, A.K.","Nat.Struct.Biol.",7,134,2000,"Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution."]
["1DFM","1D2I","n",1.5,2.16,29,0.19,"PD0101",10655616,47,"Lukacs, C.M., Kucera, R., Schildkraut, I., Aggarwal, A.K.","Nat.Struct.Biol.",7,134,2000,"Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution."]
["2W8K","2W8L","n",3.1,3.79,26,0.23,"2W8K",19059910,56,"Zhang, H., Eoff, R.L., Kozekov, I.D., Rizzo, C.J., Egli, M., Guengerich, F.P.","J.Biol.Chem.",284,3563,2009,"Versatility of Y-Family Sulfolobus Solfataricus DNA Polymerase Dpo4 in Translesion Synthesis Past Bulky N2-Alkylguanine Adducts."]
["2W8L","2W8L","y",3,3.34,50,0.23,"2W8L",19059910,53,"Zhang, H., Eoff, R.L., Kozekov, I.D., Rizzo, C.J., Egli, M., Guengerich, F.P.","J.Biol.Chem.",284,3563,2009,"Versatility of Y-Family Sulfolobus Solfataricus DNA Polymerase Dpo4 in Translesion Synthesis Past Bulky N2-Alkylguanine Adducts."]
["1S0O","1S10","n",2.1,2.5,42,0.23,"PD0510",15023344,56,"Ling, H., Boudsocq, F., Woodgate, R., Yang, W.","Mol.Cell",13,751,2004,"Snapshots of Replication through an Abasic Lesion; Structural Basis for Base Substitutions and Frameshifts."]
["1S10","1S10","y",2.1,2.48,43,0.22,"PD0511",15023344,54,"Ling, H., Boudsocq, F., Woodgate, R., Yang, W.","Mol.Cell",13,751,2004,"Snapshots of Replication through an Abasic Lesion; Structural Basis for Base Substitutions and Frameshifts."]
["2IA6","2IBK","n",2.5,2.65,65,0.22,"PD0869",17848527,54,"Bauer, J., Xing, G., Yagi, H., Sayer, J.M., Jerina, D.M., Ling, H.","PNAS",104,14905,2007,"A structural gap in Dpo4 supports mutagenic bypass of a major benzo[a]pyrene dG adduct in DNA through template misalignment."]
["2IBK","2IBK","y",2.2999999999999998,2.2599999999999998,73,0.25,"PD0870",17848527,52,"Bauer, J., Xing, G., Yagi, H., Sayer, J.M., Jerina, D.M., Ling, H.","PNAS",104,14905,2007,"A structural gap in Dpo4 supports mutagenic bypass of a major benzo[a]pyrene dG adduct in DNA through template misalignment."]
["2FLL","2FLL","y",2.6,3.33,24,0.23,"PD0777",16615915,54,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Structure",14,749,2006,"An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site."]
["2FLN","2FLL","n",2.5,3.51,11,0.23,"PD0778",16615915,54,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Structure",14,749,2006,"An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site."]
["3EPG","3EPG","y",2.5,3.3,19,0.24,"PD1189",18984581,50,"Pence, M.G., Blans, P., Zink, C.N., Hollis, T., Fishbein, J.C., Perrino, F.W.","J.Biol.Chem.",284,1732,2009,"Lesion bypass of N2-ethylguanine by human DNA polymerase iota."]
["3EPI","3EPG","n",2.9,3.24,52,0.24,"PD1190",18984581,50,"Pence, M.G., Blans, P., Zink, C.N., Hollis, T., Fishbein, J.C., Perrino, F.W.","J.Biol.Chem.",284,1732,2009,"Lesion bypass of N2-ethylguanine by human DNA polymerase iota."]
["3G6X","3G6X","y",2.1,2.91,16,0.23,"PD1248",19368886,54,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Structure",17,530,2009,"DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota."]
["3G6Y","3G6X","n",2.1,3.1,10,0.22,"PD1249",19368886,54,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Structure",17,530,2009,"DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota"]
["1S97","1S9F","n",2.4,2.88,38,0.24,"PD0516",15077104,57,"Trincao, J., Johnson, R.E., Wolfle, W.T., Escalante, C.R., Prakash, S., Prakash, L., Aggarwal, A.K.","Nature SMB",11,457,2004,"Dpo4 is hindered in extending a G.T mismatch by a reverse wobble"]
["1S9F","1S9F","y",2,2.1800000000000002,59,0.21,"PD0535",15077104,57,"Trincao, J., Johnson, R.E., Wolfle, W.T., Escalante, C.R., Prakash, S., Prakash, L., Aggarwal, A.K.","Nature SMB",11,457,2004,"Dpo4 is hindered in extending a G.T mismatch by a reverse wobble"]
["2QSG","2QSH","n",3.1,2.91,85,0.25,"PD1026",17882165,64,"Min, J.-H., Pavletich, N.P.","Nature",449,570,2007,"Recognition of DNA damage by the Rad4 nucleotide excision repair protein"]
["2QSH","2QSH","y",2.8,2.58,88,0.21,"PD1027",17882165,63,"Min, J.-H., Pavletich, N.P.","Nature",449,570,2007,"Recognition of DNA damage by the Rad4 nucleotide excision repair protein"]
["2AGO","2AGO","y",2.9,3.13,56,0.22,"PD0697",16107880,null,"Vaisman, A., Ling, H., Woodgate, R., Yang, W.","EMBO J.",24,2957,2005,"Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis."]
["2AGP","2AGO","n",2.9,3.21,54,0.21,"PD0698",16107880,null,"Vaisman, A., Ling, H., Woodgate, R., Yang, W.","EMBO J.",24,2957,2005,"Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis."]
["3KQL","3KQN","n",2.5,2.46,78,0.18,"NA0371",20080715,50,"Gu, M., Rice, C.M.","PNAS",107,521,2010,"Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism."]
["3KQN","3KQN","y",2.1,2.38,48,0.19,"NA0372",20080715,57,"Gu, M., Rice, C.M.","PNAS",107,521,2010,"Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism."]
["1BSU","1BUA","n",2,2.66,23,0.18,"PDE0145",10074946,44,"Martin, A.M., Sam, M.D., Reich, N.O., Perona, J.J.","Nat.Struct.Biol.",6,269,1999,"Structural and energetic origins of indirect readout in site-specific DNA cleavage by a restriction endonuclease."]
["1BUA","1BUA","y",2.2000000000000002,2.42,52,0.2,"PDE0146",10074946,43,"Martin, A.M., Sam, M.D., Reich, N.O., Perona, J.J.","Nat.Struct.Biol.",6,269,1999,"Structural and energetic origins of indirect readout in site-specific DNA cleavage by a restriction endonuclease."]
["1STX","1SX5","n",2.1,2.71,27,0.2,"PD0529",15170321,46,"Horton, N.C., Perona, J.J.","Biochemistry",43,6841,2004,"DNA cleavage by EcoRV endonuclease: two metal ions in three metal ion binding sites"]
["1SX5","1SX5","y",1.5,2.2599999999999998,22,0.21,"PD0531",15170321,39,"Horton, N.C., Perona, J.J.","Biochemistry",43,6841,2004,"DNA cleavage by EcoRV endonuclease: Two metal ions in three metal ion binding sites"]
["2ODI","2ODI","y",1.5,1.81,57,0.18,"PD0965",17445830,40,"Sokolowska, M., Kaus-Drobek, M., Czapinska, H., Tamulaitis, G., Szczepanowski, R.H., Urbanke, C., Siksnys, V., Bochtler, M.","J.Mol.Biol.",369,722,2007,"Monomeric restriction endonuclease BcnI in the apo form and in an asymmetric complex with target DNA."]
["2Q10","2ODI","n",1.8,1.59,89,0.18,"PD1006",17445830,40,"Sokolowska, M., Kaus-Drobek, M., Czapinska, H., Tamulaitis, G., Szczepanowski, R.H., Urbanke, C., Siksnys, V., Bochtler, M.","J.Mol.Biol.",369,722,2007,"Monomeric Restriction Endonuclease BcnI in the Apo Form and in an Asymmetric Complex with Target DNA."]
["1PNR","1PNR","y",2.7,3.96,6,0.17,"PDR020",7973627,69,"Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.","Science",266,763,1994,"Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices."]
["1WET","1PNR","n",2.6,4,3,0.18,"PDR030",9278422,null,"Schumacher, M.A., Glasfeld, A., Zalkin, H., Brennan, R.G.","J.Biol.Chem.",272,22648,1997,"The X-ray structure of the PurR-guanine-purF operator complex reveals the contributions of complementary electrostatic surfaces and a water-mediated hydrogen bond to corepressor specificity and binding affinity."]
["2AS5","2A07","n",2.7,3.28,33,0.24,"PD0707",16873067,58,"Wu, Y., Borde, M., Heissmeyer, V., Feuerer, M., Lapan, A.D., Stroud, J.C., Bates, D.L., Guo, L., Han, A., Ziegler, S.F., Mathis, D., Benoist, C., Chen, L., Rao, A.","Cell",126,375,2006,"FOXP3 Controls Regulatory T Cell Function through Cooperation with NFAT."]
["2A07","2A07","y",1.9,2.14,56,0.22,"PD0689",16407075,62,"Stroud, J.C., Wu, Y., Bates, D.L., Han, A., Nowick, K., Paabo, S., Tong, H., Chen, L.","Structure",14,159,2006,"Structure of the Forkhead Domain of FOXP2 Bound to DNA."]
["3G6Q","3G6U","n",2.2999999999999998,3.01,23,0.18,"PD1232",19372434,60,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3G6U","3G6U","y",1.9,2.93,8,0.19,"PD1235",19372434,60,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3G99","3G9I","n",1.8,3.25,2,0.19,"PD1239",19372434,60,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3G9I","3G9I","y",1.9,2.93,8,0.17,"PD1241",19372434,58,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3FSP","3FSP","y",2.2000000000000002,3.2,10,0.22,"PD1218",null,48,"O'Shea, V.L., Cao, S., Richards, J.L., Horvath, M.P., David, S.S.","TBP",null,null,null,"Structural illumination of a mutY glycosylase reaction coordinate intermediate"]
["3FSQ","3FSP","n",2.2999999999999998,3.29,11,0.22,"PD1219",null,48,"O'Shea, V.L., Cao, S., Richards, J.L., Horvath, M.P., David, S.S.","TBP",null,null,null,"Structural illumination of a mutY glycosylase reaction coordinate intermediate"]
["2EZV","2EZV","y",2.4,3.11,23,0.22,"PD0743",16308566,59,"Vanamee, E.S., Viadiu, H., Kucera, R., Dorner, L., Picone, S., Schildkraut, I., Aggarwal, A.K.","EMBO J.",24,4198,2005,"A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA"]
["2F03","2EZV","n",3.1,3.16,66,0.24,"PD0744",16308566,50,"Vanamee, E.S., Viadiu, H., Kucera, R., Dorner, L., Picone, S., Schildkraut, I., Aggarwal, A.K.","EMBO J.",24,4198,2005,"A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA."]
["1HUO","1HUZ","n",2.6,3.15,36,0.23,"PD0196",11330999,56,"Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Dunlap, C.A., Lin, Z., Paxson, C., Tsai, M.D., Chan, M.K.","Biochemistry",40,5368,2001,"Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes."]
["1HUZ","1HUZ","y",2.6,3.07,42,0.22,"PD0197",11330999,55,"Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Dunlap, C.A., Lin, Z., Paxson, C., Tsai, M.D., Chan, M.K.","Biochemistry",40,5368,2001,"Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes."]
["1BDT","1BDT","y",2.5,2.98,39,0.24,"PD0035",9927650,46,"Schildbach, J.F., Karzai, A.W., Raumann, B.E., Sauer, R.T.","PNAS",96,811,1999,"Origins of DNA-binding specificity: role of protein contacts with the DNA backbone."]
["1PAR","1BDT","n",2.6,3.58,13,0.23,"PDR012",8107872,null,"Raumann, B.E., Rould, M.A., Pabo, C.O., Sauer, R.T.","Nature",367,754,1994,"DNA recognition by beta-sheets in the Arc repressor-operator crystal structure."]
["3JSM","3JSM","y",3,3.74,23,0.25,"NA0151",19812032,75,"Das, K., Bandwar, R.P., White, K.L., Feng, J.Y., Sarafianos, S.G., Tuske, S., Tu, X., Clark, A.D., Boyer, P.L., Hou, X., Gaffney, B.L., Jones, R.A., Miller, M.D., Hughes, S.H., Arnold, E.","J.Biol.Chem.",284,35092,2009,"Structural basis for the role of the K65r mutation in HIV-1 reverse transcriptase polymerization, excision antagonism, and tenofovir resistance."]
["3JYT","3JSM","n",3.3,3.87,32,0.25,"NA0168",19812032,75,"Das, K., Bandwar, R.P., White, K.L., Feng, J.Y., Sarafianos, S.G., Tuske, S., Tu, X., Clark, A.D., Boyer, P.L., Hou, X., Gaffney, B.L., Jones, R.A., Miller, M.D., Hughes, S.H., Arnold, E.","J.Biol.Chem.",284,35092,2009,"Structural basis for the role of the K65r mutation in HIV-1 reverse transcriptase polymerization, excision antagonism, and tenofovir resistance."]
["1EXI","1EXJ","n",3.1,4.53,2,0.27,"PD0145",11201751,null,"Heldwein, E.E., Brennan, R.G.","Nature",409,378,2001,"Crystal structure of the transcription activator BmrR bound to DNA and a drug."]
["1EXJ","1EXJ","y",3,4.5599999999999996,1,0.24,"PD0146",11201751,null,"Heldwein, E.E., Brennan, R.G.","Nature",409,378,2001,"Crystal structure of the transcription activator BmrR bound to DNA and a drug."]
["2BDP","2BDP","y",1.8,2.68,14,0.24,"PDE0131",9440698,58,"Kiefer, J.R., Mao, C., Braman, J.C., Beese, L.S.","Nature",391,304,1998,"Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal."]
["3BDP","2BDP","n",1.9,3.06,5,0.25,"PDE0132",9440698,59,"Kiefer, J.R., Mao, C., Braman, J.C., Beese, L.S.","Nature",391,304,1998,"Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal."]
["3C28","3C29","n",2.6,2.65,73,0.23,"PD1081",null,61,"Ghosh, K., Van Duyne, G.D.","TBP",null,null,null,"Detailed study on Synapsis in Cre-loxP recombination reaction"]
["3C29","3C29","y",2.2000000000000002,2.12,79,0.19,"PD1082",null,61,"Ghosh, K., Van Duyne, G.D.","TBP",null,null,null,"Synapsis study in detail"]
["1TSR","1TSR","y",2.2000000000000002,3.77,2,0.21,"PDR022",8023157,null,"Cho, Y., Gorina, S., Jeffrey, P.D., Pavletich, N.P.","Science",265,346,1994,"Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations."]
["1TUP","1TSR","n",2.2000000000000002,3.79,2,0.2,"PDR027",8023157,null,"Cho, Y., Gorina, S., Jeffrey, P.D., Pavletich, N.P.","Science",265,346,1994,"Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations."]
["1OH5","1OH6","n",2.9,2.71,86,0.23,"1OH5",12907723,52,"Natrajan, G., Lamers, M.H., Enzlin, J.H., Winterwerp, H.H.K., Perrakis, A., Sixma, T.K.","NAR",31,4814,2003,"Structures of E. Coli DNA Mismatch Repair Enzyme Muts in Complex with Different Mismatches: A Common Recognition Mode for Diverse Substrates"]
["1OH6","1OH6","y",2.4,2.2599999999999998,83,0.21,"1OH6",12907723,52,"Natrajan, G., Lamers, M.H., Enzlin, J.H., Winterwerp, H.H.K., Perrakis, A., Sixma, T.K.","NAR",31,4814,2003,"Structures of E. Coli DNA Mismatch Repair Enzyme Muts in Complex with Different Mismatches: A Common Recognition Mode for Diverse Substrates"]
["2NZD","2NZD","y",2.7,2.15,95,0.23,"PD0913",17379244,58,"Ong, M.S., Richmond, T.J., Davey, C.A.","J.Mol.Biol.",368,1067,2007,"DNA stretching and extreme kinking in the nucleosome core"]
["3KUY","2NZD","n",2.9,2.4500000000000002,94,0.24,"NA0384",20026584,55,"Davey, G.E., Wu, B., Dong, Y., Surana, U., Davey, C.A.","NAR",null,null,2009,"DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent"]
["2HOS","2HOS","y",1.9,1.57,93,0.23,"PD0840",17240973,62,"Simon, M.D., Feldman, M.E., Rauh, D., Maris, A.E., Wemmer, D.E., Shokat, K.M.","Acs Chem.Biol.",1,755,2006,"Structure and properties of a re-engineered homeodomain protein-DNA interface."]
["2HOT","2HOS","n",2.2000000000000002,1.67,96,0.22,"PD0841",17240973,62,"Simon, M.D., Feldman, M.E., Rauh, D., Maris, A.E., Wemmer, D.E., Shokat, K.M.","Acs Chem.Biol.",1,755,2006,"Structure and properties of a re-engineered homeodomain protein-DNA interface."]
["1SKR","1SKR","y",2.4,2.42,74,0.23,"PD0522",15235589,59,"Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.","Nature SMB",11,784,2004,"Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7."]
["1TK8","1SKR","n",2.5,2.4300000000000002,80,0.21,"PD0556",15297882,58,"Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.","EMBO J.",23,3452,2004,"Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase."]
["1TKD","1SKR","n",2.5,2.71,60,0.2,"PD0557",15297882,58,"Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.","EMBO J.",23,3452,2004,"Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase."]
["1U45","1U47","n",2,1.99,75,0.19,"PD0579",15322558,61,"Hsu, G.W., Ober, M., Carell, T., Beese, L.S.","Nature",431,217,2004,"Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase."]
["1U47","1U47","y",2,1.9,80,0.21,"PD0580",15322558,56,"Hsu, G.W., Ober, M., Carell, T., Beese, L.S.","Nature",431,217,2004,"Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase."]
["1U48","1U47","n",2.1,2.1,74,0.21,"PD0581",15322558,55,"Hsu, G.W., Ober, M., Carell, T., Beese, L.S.","Nature",431,217,2004,"Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase."]
["1K4T","1K4T","y",2.1,2.5099999999999998,42,0.23,"PD0256",12426403,58,"Staker, B.L., Hjerrild, K., Feese, M.D., Behnke, C.A., Burgin Jr., A.B., Stewart, L.J.","PNAS",99,15387,2002,"The mechanism of topoisomerase I poisoning by a camptothecin analog"]
["1SC7","1K4T","n",3,2.64,91,0.23,"PD0521",15801827,63,"Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.","J.Med.Chem.",48,2336,2005,"Structures of three classes of anticancer agents bound to the human topoisomerase I-DNA covalent complex"]
["1T8I","1K4T","n",3,3.12,67,0.24,"PD0549",15801827,58,"Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.","J.Med.Chem.",48,2336,2005,"Structures of three classes of anticancer agents bound to the human topoisomerase I-DNA covalent complex"]
["2VIC","2VIH","n",2.4,2.69,49,0.2,"2VIC",18243097,42,"Barabas, O., Ronning, D.R., Guynet, C., Hickman, A.B., Ton-Hoang, B., Chandler, M., Dyda, F.","Cell",132,208,2008,"Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection."]
["2VIH","2VIH","y",2.1,2.63,32,0.23,"2VIH",18243097,42,"Barabas, O., Ronning, D.R., Guynet, C., Hickman, A.B., Ton-Hoang, B., Chandler, M., Dyda, F.","Cell",132,208,2008,"Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection."]
["3G8U","3G8U","y",1.9,3.31,2,0.21,"PD1236",19372434,61,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3G8X","3G8U","n",2.1,3.54,2,0.21,"PD1237",19372434,59,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3G97","3G8U","n",2.1,3.41,4,0.21,"PD1238",19372434,60,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3F2B","3F2B","y",2.4,2.96,32,0.23,"PD1200",19106298,58,"Evans, R.J., Davies, D.R., Bullard, J.M., Christensen, J., Green, L.S., Guiles, J.W., Pata, J.D., Ribble, W.K., Janjic, N., Jarvis, T.C.","PNAS",105,20695,2008,"Structure of PolC reveals unique DNA binding and fidelity determinants."]
["3F2C","3F2B","n",2.5,2.98,40,0.21,"PD1201",19106298,58,"Evans, R.J., Davies, D.R., Bullard, J.M., Christensen, J., Green, L.S., Guiles, J.W., Pata, J.D., Ribble, W.K., Janjic, N., Jarvis, T.C.","PNAS",105,20695,2008,"Structure of PolC reveals unique DNA binding and fidelity determinants."]
["3F2D","3F2B","n",2.5,3,38,0.22,"PD1202",19106298,57,"Evans, R.J., Davies, D.R., Bullard, J.M., Christensen, J., Green, L.S., Guiles, J.W., Pata, J.D., Ribble, W.K., Janjic, N., Jarvis, T.C.","PNAS",105,20695,2008,"Structure of PolC reveals unique DNA binding and fidelity determinants."]
["2DDG","2DP6","n",2.1,1.92,85,0.22,"PD0773",17870091,66,"Kosaka, H., Hoseki, J., Nakagawa, N., Kuramitsu, S., Masui, R.","J.Mol.Biol.",373,839,2007,"Crystal structure of family 5 uracil-DNA glycosylase bound to DNA."]
["2DEM","2DP6","n",2,1.78,85,0.2,"PD0786",17870091,66,"Kosaka, H., Hoseki, J., Nakagawa, N., Kuramitsu, S., Masui, R.","J.Mol.Biol.",373,839,2007,"Crystal structure of family 5 uracil-DNA glycosylase bound to DNA."]
["2DP6","2DP6","y",1.8,1.51,93,0.2,"PD0803",null,66,"Kosaka, H., Nakagawa, N., Masui, R., Kuramitsu, S.","TBP",null,null,null,"Structure of Family 5 Uracil-DNA Glycosylase Bound to DNA Reveals Insights into the Mechanism for Substrate Recognition and Catalysis"]
["3DZU","3DZY","n",3.2,3.51,50,0.2,"PD1164",null,50,"Chandra, V., Huang, P., Hamuro, Y., Raghuram, S., Wang, Y., Burris, T.P., Rastinejad, F.","Nature",null,null,2008,"Structural Organization of the Intact PPARgamma-RXRalpha Nuclear Receptor Complex on DNA"]
["3DZY","3DZY","y",3.1,3.47,48,0.21,"PD1163",null,50,"Chandra, V., Huang, P., Hamuro, Y., Raghuram, S., Wang, Y., Burris, T.P., Rastinejad, F.","Nature",null,null,2008,"Structural Organization of the Intact PPARgamma-RXRalpha Nuclear Receptor Complex on DNA"]
["3E00","3DZY","n",3.1,3.54,43,0.21,"PD1165",null,50,"Chandra, V., Huang, P., Hamuro, Y., Raghuram, S., Wang, Y., Burris, T.P., Rastinejad, F.","Nature",null,null,2008,"Structural Organization of the Intact PPARgamma-RXRalpha Nuclear Receptor Complex on DNA"]
["1A6Y","1A6Y","y",2.2999999999999998,3.78,3,0.19,"PD0008",9660968,53,"Zhao, Q., Khorasanizadeh, S., Miyoshi, Y., Lazar, M.A., Rastinejad, F.","Mol.Cell",1,849,1998,"Structural elements of an orphan nuclear receptor-DNA complex."]
["1HLZ","1A6Y","n",2.8,3.73,16,0.26,"PD0193",11669620,43,"Sierk, M.L., Zhao, Q., Rastinejad, F.","Biochemistry",40,12833,2001,"DNA Deformability as a Recognition Feature in the RevErb Response Element"]
["1EO3","1EO4","n",2,2.67,22,0.2,"PD0129",-1,40,"Horton, N.C., Connolly, B.A., Perona, J.J.","J.Am.Chem.Soc.",122,3314,2000,"Inhibition of EcoRV Endonuclease by Deoxyribo-3'-S-phosphorothiolates: A High-Resolution X-ray Crystallographic Study"]
["1EO4","1EO4","y",1.9,2.42,33,0.22,"PD0130",-1,39,"Horton, N.C., Connolly, B.A., Perona, J.J.","J.Am.Chem.Soc.",122,3314,2000,"Inhibition of EcoRV Endonuclease by Deoxyribo-3'-S-phosphorothiolates: A High-Resolution X-ray Crystallographic Study"]
["1EON","1EON","y",1.6,2.21,30,0.23,"PD0131","-1",40,"Horton, N.C., Connolly, B.A., Perona, J.J.","J.Am.Chem.Soc.",122,3314,2000,"Inhibition of EcoRV Endonuclease by Deoxyribo-3'-S-phosphorothiolates: A High-Resolution X-ray Crystallographic Study"]
["1X9M","1X9M","y",2.1,2.39,51,0.21,"PD0589",15528277,60,"Dutta, S., Li, Y., Johnson, D., Dzantiev, L., Richardson, C.C., Romano, L.J., Ellenberger, T.","PNAS",101,16186,2004,"Crystal structures of 2-acetylaminofluorene and 2-aminofluorene in complex with T7 DNA polymerase reveal mechanisms of mutagenesis."]
["1X9S","1X9M","n",2.7,2.88,64,0.23,"PD0590",15528277,60,"Dutta, S., Li, Y., Johnson, D., Dzantiev, L., Richardson, C.C., Romano, L.J., Ellenberger, T.","PNAS",101,16186,2004,"Crystal structures of 2-acetylaminofluorene and 2-aminofluorene in complex with T7 DNA polymerase reveal mechanisms of mutagenesis."]
["1X9W","1X9M","n",2.2999999999999998,2.6,53,0.23,"PD0591",15528277,60,"Dutta, S., Li, Y., Johnson, D., Dzantiev, L., Richardson, C.C., Romano, L.J., Ellenberger, T.","PNAS",101,16186,2004,"Crystal structures of 2-acetylaminofluorene and 2-aminofluorene in complex with T7 DNA polymerase reveal mechanisms of mutagenesis."]
["1OE4","1OE4","y",2,1.95,78,0.18,"1OE4",12820976,45,"Wibley, J.E.A., Waters, T.R., Haushalter, K., Verdine, G.L., Pearl, L.H.","Mol.Cell",11,1647,2003,"Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1"]
["1OE5","1OE4","n",2.2999999999999998,2.84,34,0.17,"1OE5","12820976",55,"Wibley, J.E.A., Waters, T.R., Haushalter, K., Verdine, G.L., Pearl, L.H.","Mol.Cell",11,1647,2003,"Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1"]
["1OE6","1OE4","n",2.7,3.28,30,0.16,"NA0256",12820976,57,"Wibley, J.E.A., Waters, T.R., Haushalter, K., Verdine, G.L., Pearl, L.H.","Mol.Cell",11,1647,2003,"Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1"]
["2HVH","3EZ5","n",2.5,1.78,98,0.2,"PD0844",17179038,54,"Warren, J.J., Forsberg, L.J., Beese, L.S.","PNAS",103,19701,2006,"The structural basis for the mutagenicity of O6-methyl-guanine lesions."]
["2HVI","3EZ5","n",2,1.72,89,0.2,"PD0845",17179038,53,"Warren, J.J., Forsberg, L.J., Beese, L.S.","PNAS",103,19701,2006,"The structural basis for the mutagenicity of O6-methyl-guanine lesions."]
["3EZ5","3EZ5","y",1.9,1.94,73,0.21,"PD1199",20152155,53,"Golosov, A.A., Warren, J.J., Beese, L.S., Karplus, M.","Structure",18,83,2010,"The Mechanism of the Translocation Step in DNA Replication by DNA Polymerase I: A Computer Simulation Analysis."]
["3G3C","3G4T","n",3,2.4700000000000002,95,0.24,"PD1227",null,57,"Lakomek, K., Dickmanns, A., Ciirdaeva, E., Schomacher, L., Fritz, H.-J., Ficner, R.","TBP",null,null,null,"3'- 5' exo competes with 2'-desoxyuridine endonuclease activity: Structures of the archaeal ExoIII homologue Mth0212 without and in complex with different substrate DNAs"]
["3G3Y","3G4T","n",2.5,2.37,83,0.25,"PD1228",null,46,"Lakomek, K., Dickmanns, A., Ciirdaeva, E., Schomacher, L., Fritz, H.-J., Ficner, R.","TBP",null,null,null,"3'- 5' exo competes with 2'-desoxyuridine endonuclease activity: Structures of the archaeal ExoIII homologue Mth0212 without and in complex with different substrate DNAs"]
["3G4T","3G4T","y",2.6,2.4700000000000002,84,0.24,"PD1229",null,58,"Lakomek, K., Dickmanns, A., Ciirdaeva, E., Schomacher, L., Fritz, H.-J., Ficner, R.","TBP",null,null,null,"3'- 5' exo competes with 2'-desoxyuridine endonuclease activity: Structures of the archaeal ExoIII homologue Mth0212 without and in complex with different substrate DNAs"]
["1HAO","1HAP","n",2.8,4.54,1,0.16,"PDE0119",15299700,null,"Padmanabhan, K., Tulinsky, A.","Acta Cr. D",52,272,1996,"An ambiguous structure of a DNA 15-mer thrombin complex."]
["1HAP","1HAP","y",2.8,4.49,1,0.16,"PDE0118",15299700,null,"Padmanabhan, K., Tulinsky, A.","Acta Cr. D",52,272,1996,"An ambiguous structure of a DNA 15-mer thrombin complex."]
["1HUT","1HAP","n",2.9,4.6500000000000004,1,0.16,"PDE013",8102368,null,"Padmanabhan, K., Padmanabhan, K.P., Ferrara, J.D., Sadler, J.E., Tulinsky, A.","J.Biol.Chem.",268,17651,1993,"The structure of alpha-thrombin inhibited by a 15-mer single-stranded DNA aptamer."]
["2HHT","2HHV","n",2.1,1.74,91,0.2,"PD0826",17179038,58,"Warren, J.J., Forsberg, L.J., Beese, L.S.","PNAS",103,19701,2006,"The structural basis for the mutagenicity of O6-methyl-guanine lesions."]
["2HHV","2HHV","y",1.6,1.6,81,0.22,"PD0828",17179038,57,"Warren, J.J., Forsberg, L.J., Beese, L.S.","PNAS",103,19701,2006,"The structural basis for the mutagenicity of O6-methyl-guanine lesions."]
["2HW3","2HHV","y",2,1.27,99,0.21,"PD0846",17179038,58,"Warren, J.J., Forsberg, L.J., Beese, L.S.","PNAS",103,19701,2006,"The structural basis for the mutagenicity of O6-methyl-guanine lesions."]
["3CVU","3CVU","y",2,1.53,96,0.19,"PD1116",18956392,50,"Maul, M.J., Barends, T.R., Glas, A.F., Cryle, M.J., Domratcheva, T., Schneider, S., Schlichting, I., Carell, T.","Angew.Chem.Int.Ed.Engl.",47,10076,2008,"Crystal structure and mechanism of a DNA (6-4) photolyase."]
["3CVV","3CVU","n",2.1,1.49,98,0.17,"PD1117",19570997,48,"Glas, A.F., Maul, M.J., Cryle, M., Barends, T.R., Schneider, S., Kaya, E., Schlichting, I., Carell, T.","PNAS",106,11540,2009,"The archaeal cofactor F0 is a light-harvesting antenna chromophore in eukaryotes."]
["3CVY","3CVU","n",2.7,1.87,99,0.22,"PD1120",18956392,45,"Maul, M.J., Barends, T.R., Glas, A.F., Cryle, M.J., Domratcheva, T., Schneider, S., Schlichting, I., Carell, T.","Angew.Chem.Int.Ed.Engl.",47,10076,2008,"Crystal structure and mechanism of a DNA (6-4) photolyase."]
["2WB2","2WQ7","n",3,2.4900000000000002,94,0.21,"2WB2",19722240,50,"Glas, A.F., Schneider, S., Maul, M.J., Hennecke, U., Carell, T.","Chemistry",null,null,2009,"Crystal Structure of the T(6-4)C Lesion in Complex with a (6-4) DNA Photolyase and Repair of Uv-Induced (6-4) and Dewar Photolesions."]
["2WQ6","2WQ7","n",2.2999999999999998,2.04,89,0.2,"NA0446",20166732,58,"Glas, A.F., Kaya, E., Schneider, S., Heil, K., Fazio, D., Maul, M.J., Carell, T.","J.Am.Chem.Soc.",null,null,2010,"DNA (6-4) Photolyases Reduce Dewar Isomers for Isomerization Into (6-4) Lesions"]
["2WQ7","2WQ7","y",2,1.97,76,0.18,"NA0447",20166732,58,"Glas, A.F., Kaya, E., Schneider, S., Heil, K., Fazio, D., Maul, M.J., Carell, T.","J.Am.Chem.Soc.",null,null,2010,"DNA (6-4) Photolyases Reduce Dewar Isomers for Isomerization Into (6-4) Lesions"]
["2PUE","2PUG","n",2.7,3.91,6,0.18,"PDR043",9454587,null,"Lu, F., Schumacher, M.A., Arvidson, D.N., Haldimann, A., Wanner, B.L., Zalkin, H., Brennan, R.G.","Biochemistry",37,971,1998,"Structure-based redesign of corepressor specificity of the Escherichia coli purine repressor by substitution of residue 190."]
["2PUF","2PUG","n",3,4.07,9,0.22,"PDR044",9454587,null,"Lu, F., Schumacher, M.A., Arvidson, D.N., Haldimann, A., Wanner, B.L., Zalkin, H., Brennan, R.G.","Biochemistry",37,971,1998,"Structure-based redesign of corepressor specificity of the Escherichia coli purine repressor by substitution of residue 190."]
["2PUG","2PUG","y",2.7,3.74,11,0.17,"PDR045",9454587,null,"Lu, F., Schumacher, M.A., Arvidson, D.N., Haldimann, A., Wanner, B.L., Zalkin, H., Brennan, R.G.","Biochemistry",37,971,1998,"Structure-based redesign of corepressor specificity of the Escherichia coli purine repressor by substitution of residue 190."]
["1BHM","2BAM","n",2.2000000000000002,2.82,27,0.19,"PDE020",7624794,54,"Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., Aggarwal, A.K.","Science",269,656,1995,"Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding."]
["2BAM","2BAM","y",2,2.82,15,0.23,"PD0029",9783752,50,"Viadiu, H., Aggarwal, A.K.","Nat.Struct.Biol.",5,910,1998,"The role of metals in catalysis by the restriction endonuclease BamHI."]
["3BAM","2BAM","y",1.8,2.8,10,0.23,"PD0031",9783752,51,"Viadiu, H., Aggarwal, A.K.","Nat.Struct.Biol.",5,910,1998,"The role of metals in catalysis by the restriction endonuclease BamHI."]
["2BQ3","2BQ3","y",2,2.76,18,0.24,"2BQ3",15965231,54,"Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P.","J.Biol.Chem.",280,29750,2005,"DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine."]
["2BQR","2BQ3","n",2.4,2.85,40,0.22,"2BQR",15965231,52,"Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P.","J.Biol.Chem.",280,29750,2005,"DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine."]
["2BQU","2BQ3","n",2.5,2.8,53,0.22,"2BQU",15965231,53,"Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P.","J.Biol.Chem.",280,29750,2005,"DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine."]
["3BQ0","3BQ0","y",2.6,2.58,77,0.22,"PD1063",18374650,52,"Wilson, R.C., Pata, J.D.","Mol.Cell",29,767,2008,"Structural insights into the generation of single-base deletions by the Y family DNA polymerase dbh."]
["3BQ1","3BQ0","n",2.7,2.54,84,0.21,"PD1064",18374650,57,"Wilson, R.C., Pata, J.D.","Mol.Cell",29,767,2008,"Structural insights into the generation of single-base deletions by the Y family DNA polymerase dbh."]
["3BQ2","3BQ0","n",2.7,2.93,59,0.24,"PD1065",18374650,52,"Wilson, R.C., Pata, J.D.","Mol.Cell",29,767,2008,"Structural insights into the generation of single-base deletions by the Y family DNA polymerase dbh."]
["2V9W","2VA2","n",3,3.93,14,0.22,"2V9W",17951245,52,"Irimia, A., Eoff, R.L., Pallan, P.S., Guengerich, F.P., Egli, M.","J.Biol.Chem.",282,36421,2007,"Structure and Activity of Y-Class DNA Polymerase Dpo4 from Sulfolobus Solfataricus with Templates Containing the Hydrophobic Thymine Analog 2,4-Difluorotoluene."]
["2VA2","2VA2","y",2.8,3.39,34,0.21,"2VA2",17951245,59,"Irimia, A., Eoff, R.L., Pallan, P.S., Guengerich, F.P., Egli, M.","J.Biol.Chem.",282,36421,2007,"Structure and Activity of Y-Class DNA Polymerase Dpo4 from Sulfolobus Solfataricus with Templates Containing the Hydrophobic Thymine Analog 2,4-Difluorotoluene."]
["2VA3","2VA2","n",3,3.65,28,0.23,"2VA3",17951245,54,"Irimia, A., Eoff, R.L., Pallan, P.S., Guengerich, F.P., Egli, M.","J.Biol.Chem.",282,36421,2007,"Structure and Activity of Y-Class DNA Polymerase Dpo4 from Sulfolobus Solfataricus with Templates Containing the Hydrophobic Thymine Analog 2,4-Difluorotoluene."]
["3FYL","3G9M","n",1.6,3.02,2,0.2,"PD1225",19372434,59,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3G9M","3G9M","y",1.6,2.62,10,0.19,"PD1243",19372434,60,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3G9O","3G9M","n",1.7,2.61,12,0.18,"PD1244",19372434,60,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3G9P","3G9M","n",1.7,2.61,12,0.18,"PD1245",19372434,60,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["1IJW","1JJ6","n",2.4,2.7,53,0.22,"PD0213",11847127,52,"Chiu, T.K., Sohn, C., Dickerson, R.E., Johnson, R.C.","EMBO J.",21,801,2002,"Testing water-mediated DNA recognition by the Hin recombinase."]
["1JJ6","1JJ6","y",2.2999999999999998,2.4900000000000002,62,0.24,"PD0228",11847127,52,"Chiu, T.K., Sohn, C., Dickerson, R.E., Johnson, R.C.","EMBO J.",21,801,2002,"Testing water-mediated DNA recognition by the Hin recombinase."]
["1JJ8","1JJ6","n",2.8,2.78,74,0.21,"PD0229",11847127,47,"Chiu, T.K., Sohn, C., Dickerson, R.E., Johnson, R.C.","EMBO J.",21,801,2002,"Testing water-mediated DNA recognition by the Hin recombinase."]
["1HCR","1JJ6","n",2.2999999999999998,3.87,2,0.23,"PDE009",8278807,null,"Feng, J.A., Johnson, R.C., Dickerson, R.E.","Science",263,348,1994,"Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions."]
["2FKC","2FKC","y",2.4,2.81,43,0.23,"PD0760",16473850,58,"Horton, J.R., Zhang, X., Maunus, R., Yang, Z., Wilson, G.G., Roberts, R.J., Cheng, X.","NAR",34,939,2006,"DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion."]
["2FKH","2FKC","n",3.1,2.9,85,0.23,"PD0761",16473850,56,"Horton, J.R., Zhang, X., Maunus, R., Yang, Z., Wilson, G.G., Roberts, R.J., Cheng, X.","NAR",34,939,2006,"DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion."]
["2FL3","2FKC","n",2.4,2.87,39,0.25,"PD0762",16473850,58,"Horton, J.R., Zhang, X., Maunus, R., Yang, Z., Wilson, G.G., Roberts, R.J., Cheng, X.","NAR",34,939,2006,"DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion."]
["2FLC","2FKC","n",2.6,3.41,19,0.28000000000000003,"PD0763",16473850,57,"Horton, J.R., Zhang, X., Maunus, R., Yang, Z., Wilson, G.G., Roberts, R.J., Cheng, X.","NAR",34,939,2006,"DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion."]
["2BCQ","2BCR","n",1.7,1.83,69,0.21,"PD0721",16439207,55,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Pedersen, L.C., Kunkel, T.A.","Cell",124,331,2006,"Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase"]
["2BCR","2BCR","y",1.8,1.63,87,0.2,"PD0722",16439207,55,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Pedersen, L.C., Kunkel, T.A.","Cell",124,331,2006,"Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase"]
["2BCS","2BCR","n",2.2000000000000002,1.98,87,0.21,"PD0723",16439207,55,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Pedersen, L.C., Kunkel, T.A.","Cell",124,331,2006,"Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase"]
["2BCU","2BCR","n",2.2000000000000002,2.19,74,0.22,"PD0724",16439207,55,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Pedersen, L.C., Kunkel, T.A.","Cell",124,331,2006,"Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase"]
["1ZTT","1ZTW","n",1.9,2.7,15,0.22,"PD0678",16049022,55,"Goodwin, K.D., Long, E.C., Georgiadis, M.M.","NAR",33,4106,2005,"A host-guest approach for determining drug-DNA interactions: an example using netropsin."]
["1ZTW","1ZTW","y",1.8,2.2400000000000002,42,0.23,"PD0679",16049022,55,"Goodwin, K.D., Long, E.C., Georgiadis, M.M.","NAR",33,4106,2005,"A host-guest approach for determining drug-DNA interactions: an example using netropsin."]
["2FJV","1ZTW","n",2.1,2.84,17,0.23,"PD0756",16771498,55,"Goodwin, K.D., Lewis, M.A., Tanious, F.A., Tidwell, R.R., Wilson, W.D., Georgiadis, M.M., Long, E.C.","J.Am.Chem.Soc.",128,7846,2006,"A High-Throughput, High-Resolution Strategy for the Study of Site-Selective DNA Binding Agents: Analysis of a 'Highly Twisted' Benzimidazole-Diamidine."]
["3FSI","1ZTW","n",1.8,2.34,33,0.23,"PD1220",19405506,55,"Glass, L.S., Nguyen, B., Goodwin, K.D., Dardonville, C., Wilson, W.D., Long, E.C., Georgiadis, M.M.","Biochemistry",48,5943,2009,"Crystal structure of a trypanocidal 4,4'-bis(imidazolinylamino)diphenylamine bound to DNA."]
["1MHT","2HR1","n",2.6,2.89,56,0.17,"PDEB08",8293469,65,"Klimasauskas, S., Kumar, S., Roberts, R.J., Cheng, X.","Cell",76,357,1994,"HhaI methyltransferase flips its target base out of the DNA helix."]
["2HR1","2HR1","y",2,2.59,26,0.39,"PD0842",16926025,63,"Shieh, F.K., Youngblood, B., Reich, N.O.","J.Mol.Biol.",362,516,2006,"The Role of Arg165 Towards Base Flipping, Base Stabilization and Catalysis in M.HhaI."]
["3MHT","2HR1","n",2.7,3.02,53,0.19,"PDE0121",8800212,null,"O'Gara, M., Klimasauskas, S., Roberts, R.J., Cheng, X.","J.Mol.Biol.",261,634,1996,"Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes."]
["4MHT","2HR1","n",2.7,2.78,70,0.18,"PDEB122",8800212,null,"O'Gara, M., Klimasauskas, S., Roberts, R.J., Cheng, X.","J.Mol.Biol.",261,634,1996,"Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes."]
["2GIG","2GIG","y",1.8,2.2200000000000002,44,0.18,"PD0793",16675462,44,"Joshi, H.K., Etzkorn, C., Chatwell, L., Bitinaite, J., Horton, N.C.","J.Biol.Chem.",281,23852,2006,"Alteration of Sequence Specificity of the Type II Restriction Endonuclease HincII through an Indirect Readout Mechanism."]
["2GIH","2GIG","n",2.5,2.8,53,0.19,"PD0794",16675462,49,"Joshi, H.K., Etzkorn, C., Chatwell, L., Bitinaite, J., Horton, N.C.","J.Biol.Chem.",281,23852,2006,"Alteration of Sequence Specificity of the Type II Restriction Endonuclease HincII through an Indirect Readout Mechanism."]
["3E41","2GIG","n",2.7,3.25,36,0.19,"PD1170",18762194,42,"Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.","J.Mol.Biol.",383,186,2008,"DNA distortion and specificity in a sequence-specific endonuclease."]
["3E42","2GIG","n",2.7,2.98,56,0.19,"PD1171",18762194,42,"Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.","J.Mol.Biol.",383,186,2008,"DNA distortion and specificity in a sequence-specific endonuclease."]
["1PJI","3C58","n",1.9,1.96,71,0.21,"PD0446",16243784,67,"Pereira de Jesus, K., Serre, L., Zelwer, C., Castaing, B.","NAR",33,5936,2005,"Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA."]
["1PM5","3C58","n",2,1.62,92,0.2,"PD0448",16243784,67,"Pereira de Jesus, K., Serre, L., Zelwer, C., Castaing, B.","NAR",33,5936,2005,"Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA."]
["1XC8","3C58","n",2,1.7,89,0.18,"PD0592",15249553,65,"Coste, F., Ober, M., Carell, T., Boiteux, S., Zelwer, C., Castaing, B.","J.Biol.Chem.",279,44074,2004,"Structural basis for the recognition of the FapydG lesion (2,6-diamino-4-hydroxy-5-formamidopyrimidine) by formamidopyrimidine-DNA glycosylase."]
["3C58","3C58","y",1.9,1.55,94,0.17,"PD1092",18635007,66,"Coste, F., Ober, M., Le Bihan, Y.V., Izquierdo, M.A., Hervouet, N., Mueller, H., Carell, T., Castaing, B.","Chem.Biol.",15,706,2008,"Bacterial base excision repair enzyme Fpg recognizes bulky N7-substituted-FapydG lesion via unproductive binding mode"]
["1HU0","1LWY","n",2.4,2.67,51,0.21,"PD0195",12592398,56,"Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.","Nat.Struct.Biol.",10,204,2003,"Product-Assisted Catalysis in base-excision DNA Repair"]
["1LWV","1LWY","n",2.2999999999999998,2.77,40,0.23,"PD0321",12592398,56,"Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.","Nat.Struct.Biol.",10,204,2003,"Product-Assisted Catalysis in Base Excision DNA Repair"]
["1LWW","1LWY","n",2.1,2.8,22,0.24,"PD0322",12592398,57,"Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.","Nat.Struct.Biol.",10,204,2003,"Product-Assisted Catalysis in Base Excision DNA Repair"]
["1LWY","1LWY","y",2,2.61,26,0.22,"PD0323",12592398,56,"Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.","Nat.Struct.Biol.",10,204,2003,"Product-Assisted Catalysis in Base Excision DNA Repair"]
["2ASD","2ASD","y",2,1.91,78,0.23,"PD0708",16379496,62,"Rechkoblit, O., Malinina, L., Cheng, Y., Kuryavyi, V., Broyde, S., Geacintov, N.E., Patel, D.J.","Plos Biol.",4,1,2006,"Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion"]
["2ASJ","2ASD","n",2.4,2.9,33,0.25,"PD0709",16379496,50,"Rechkoblit, O., Malinina, L., Cheng, Y., Kuryavyi, V., Broyde, S., Geacintov, N.E., Patel, D.J.","Plos Biol.",4,1,2006,"Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion"]
["2ATL","2ASD","n",2.8,2.95,68,0.23,"PD0711",16379496,60,"Rechkoblit, O., Malinina, L., Cheng, Y., Kuryavyi, V., Broyde, S., Geacintov, N.E., Patel, D.J.","Plos Biol.",4,1,2006,"Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion"]
["2AU0","2ASD","n",2.7,3.54,18,0.27,"PD0712",16379496,48,"Rechkoblit, O., Malinina, L., Cheng, Y., Kuryavyi, V., Broyde, S., Geacintov, N.E., Patel, D.J.","Plos Biol.",4,1,2006,"Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion"]
["1ECR","2I06","n",2.7,3.26,35,0.2,"PDTE01",8857533,57,"Kamada, K., Horiuchi, T., Ohsumi, K., Shimamoto, N., Morikawa, K.","Nature",383,598,1996,"Structure of a replication-terminator protein complexed with DNA."]
["2EWJ","2I06","n",2.7,3.2,39,0.22,"PD0737",null,54,"Mulcair, M.D., Schaeffer, P.M., Oakley, A.J., Dixon, N.E.","TBP",null,null,null,"A molecular mousetrap determines polarity of replication fork arrest by Tus-Ter sites in E. coli"]
["2I05","2I06","n",2.6,3.31,25,0.23,"PD0848",null,55,"Oakley, A.J., Mulcair, M.D., Schaeffer, P.M., Dixon, N.E.","TBP",null,null,null,"Polarity of Termination of DNA Replication in E. coli"]
["2I06","2I06","y",2.2000000000000002,3,17,0.22,"PD0849",null,55,"Oakley, A.J., Mulcair, M.D., Schaeffer, P.M., Dixon, N.E.","TBP",null,null,null,"Polarity of Termination of DNA Replication in E. coli."]
["1SKS","1SL2","n",2.2999999999999998,2.73,43,0.24,"PD0523",15235589,60,"Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.","Nature SMB",11,784,2004,"Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7."]
["1SKW","1SL2","n",2.2999999999999998,2.52,59,0.24,"PD0524",15235589,60,"Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.","Nature SMB",11,784,2004,"Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7."]
["1SL0","1SL2","n",3.2,3.71,36,0.28000000000000003,"PD0525",15235589,57,"Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.","Nature SMB",11,784,2004,"Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7."]
["1SL1","1SL2","n",2.2000000000000002,2.6,43,0.24,"PD0526",15235589,61,"Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.","Nature SMB",11,784,2004,"Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7."]
["1SL2","1SL2","y",2.2999999999999998,2.29,76,0.25,"PD0527",15235589,61,"Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.","Nature SMB",11,784,2004,"Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7."]
["2O54","2O5C","n",2.5,2.1800000000000002,91,0.23,"PD0940",17331537,68,"Changela, A., Digate, R.J., Mondragon, A.","J.Mol.Biol.",368,105,2007,"Structural Studies of E. coli Topoisomerase III-DNA Complexes Reveal a Novel Type IA Topoisomerase-DNA Conformational Intermediate."]
["2O59","2O5C","n",2.5,1.98,96,0.22,"PD0941",17331537,68,"Changela, A., Digate, R.J., Mondragon, A.","J.Mol.Biol.",368,105,2007,"Structural Studies of E. coli Topoisomerase III-DNA Complexes Reveal a Novel Type IA Topoisomerase-DNA Conformational Intermediate."]
["2O19","2O5C","n",2.5,1.89,96,0.21,"PD0915",17331537,68,"Changela, A., Digate, R.J., Mondragon, A.","J.Mol.Biol.",368,105,2007,"Structural Studies of E. coli Topoisomerase III-DNA Complexes Reveal a Novel Type IA Topoisomerase-DNA Conformational Intermediate."]
["2O5C","2O5C","y",2.4,1.65,98,0.21,"PD0942",17331537,67,"Changela, A., Digate, R.J., Mondragon, A.","J.Mol.Biol.",368,105,2007,"Structural Studies of E. coli Topoisomerase III-DNA Complexes Reveal a Novel Type IA Topoisomerase-DNA Conformational Intermediate."]
["2O5E","2O5C","n",2.5,2.14,92,0.22,"PD0943",17331537,68,"Changela, A., Digate, R.J., Mondragon, A.","J.Mol.Biol.",368,105,2007,"Structural Studies of E. coli Topoisomerase III-DNA Complexes Reveal a Novel Type IA Topoisomerase-DNA Conformational Intermediate."]
["2GII","3E3Y","n",2.2999999999999998,3.08,20,0.24,"PD0795",16675462,44,"Joshi, H.K., Etzkorn, C., Chatwell, L., Bitinaite, J., Horton, N.C.","J.Biol.Chem.",281,23852,2006,"Alteration of Sequence Specificity of the Type II Restriction Endonuclease HincII through an Indirect Readout Mechanism."]
["2GIJ","3E3Y","n",1.9,2.5,28,0.24,"PD0796",16675462,43,"Joshi, H.K., Etzkorn, C., Chatwell, L., Bitinaite, J., Horton, N.C.","J.Biol.Chem.",281,23852,2006,"Alteration of Sequence Specificity of the Type II Restriction Endonuclease HincII through an Indirect Readout Mechanism."]
["3E3Y","3E3Y","y",2.1,2.29,60,0.18,"PD1168",18762194,43,"Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.","J.Mol.Biol.",383,186,2008,"DNA distortion and specificity in a sequence-specific endonuclease."]
["3E40","3E3Y","n",2.1,2.25,62,0.17,"PD1169",18762194,43,"Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.","J.Mol.Biol.",383,186,2008,"DNA distortion and specificity in a sequence-specific endonuclease."]
["3E43","3E3Y","n",2.7,3.06,51,0.2,"PD1172",18762194,43,"Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.","J.Mol.Biol.",383,186,2008,"DNA distortion and specificity in a sequence-specific endonuclease."]
["1OMH","1QX0","n",2,2.84,13,0.25,"PD0394",14625590,58,"Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., de la Cruz, F., Coll, M.","Nat.Struct.Biol.",10,1002,2003,"Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC."]
["1OSB","1QX0","n",2.7,2.58,79,0.2,"PD0402",14625590,59,"Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., de la Cruz, F., Coll, M.","Nat.Struct.Biol.",10,1002,2003,"Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC."]
["1QX0","1QX0","y",2.2999999999999998,2.38,69,0.24,"PD0467",14625590,59,"Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Prez-Luque, R., Gomis-Rth, F.X., de la Cruz, F., Coll, M.","Nat.Struct.Biol.",10,1002,2003,"RECOGNITION AND PROCESSING OF THE ORIGIN OF TRANSFER DNA BY CONJUGATIVE RELAXASE TRWC"]
["1S6M","1QX0","n",2.2999999999999998,2.63,50,0.21,"PD0517",16540117,61,"Boer, R., Russi, S., Guasch, A., Lucas, M., Blanco, A.G., Perez-Luque, R., Coll, M., de la Cruz, F.","J.Mol.Biol.",358,857,2006,"Unveiling the molecular mechanism of a conjugative relaxase: The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site."]
["1ZM5","1QX0","n",2.5,2.86,49,0.26,"PD0669",16540117,59,"Boer, R., Russi, S., Guasch, A., Lucas, M., Blanco, A.G., Perez-Luque, R., Coll, M., de la Cruz, F.","J.Mol.Biol.",358,857,2006,"Unveiling the Molecular Mechanism of a Conjugative Relaxase: The Structure of TrwC Complexed with a 27-mer DNA Comprising the Recognition Hairpin and the Cleavage Site"]
["1EMH","1EMH","y",1.8,1.61,89,0.22,"PD0127",10805771,48,"Parikh, S.S., Walcher, G., Jones, G.D., Slupphaug, G., Krokan, H.E., Blackburn, G.M., Tainer, J.A.","PNAS",97,5083,2000,"Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects."]
["1EMJ","1EMH","n",2,1.68,91,0.23,"PD0128",10805771,49,"Parikh, S.S., Walcher, G., Jones, G.D., Slupphaug, G., Krokan, H.E., Blackburn, G.M., Tainer, J.A.","PNAS",97,5083,2000,"Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects."]
["1Q3F","1EMH","n",1.9,1.81,82,0.19,"PD0461",14580190,52,"Bianchet, M.A., Seiple, L.A., Jiang, Y.L., Ichikawa, Y., Amzel, L.M., Stivers, J.T.","Biochemistry",42,12455,2003,"Electrostatic guidance of glycosyl cation migration along the reaction coordinate of uracil DNA glycosylase."]
["2OXM","1EMH","n",2.5,3.1,31,0.26,"PD0973",17704764,50,"Parker, J.B., Bianchet, M.A., Krosky, D.J., Friedman, J.I., Amzel, L.M., Stivers, J.T.","Nature",449,433,2007,"Enzymatic capture of an extrahelical thymine in the search for uracil in DNA."]
["2OYT","1EMH","n",2,1.36,99,0.19,"PD0980",17704764,52,"Parker, J.B., Bianchet, M.A., Krosky, D.J., Friedman, J.I., Amzel, L.M., Stivers, J.T.","Nature",449,433,2007,"Enzymatic capture of an extrahelical thymine in the search for uracil in DNA."]
["1KFS","1QSL","n",2.1,2.9,17,0.2,"PDE0137",9514742,64,"Brautigam, C.A., Steitz, T.A.","J.Mol.Biol.",277,363,1998,"Structural principles for the inhibition of the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates."]
["2KZZ","1QSL","n",2.2999999999999998,3.07,17,0.2,"PD0106",9888810,64,"Brautigam, C.A., Sun, S., Piccirilli, J.A., Steitz, T.A.","Biochemistry",38,696,1999,"Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli."]
["1QSL","1QSL","y",2.2000000000000002,2.92,21,0.21,"PD0064",10631518,62,"Brautigam, C.A., Aschheim, K., Steitz, T.A.","Chem.Biol.",6,901,1999,"Structural elucidation of the binding and inhibitory properties of lanthanide (III) ions at the 3'-5' exonucleolytic active site of the Klenow fragment"]
["2KZM","1QSL","n",2.6,2.9,55,0.2,"PD0105",9888810,64,"Brautigam, C.A., Sun, S., Piccirilli, J.A., Steitz, T.A.","Biochemistry",38,696,1999,"Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli."]
["2KFN","1QSL","y",2,2.82,16,0.21,"PD0014",9888810,64,"Brautigam, C.A., Sun, S., Piccirilli, J.A., Steitz, T.A.","Biochemistry",38,696,1999,"Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli."]
["2KFZ","1QSL","n",2,2.82,16,0.22,"PD0015",9888810,64,"Brautigam, C.A., Sun, S., Piccirilli, J.A., Steitz, T.A.","Biochemistry",38,696,1999,"Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli."]
["3K57","3K57","y",2.1,2.09,74,0.2,"NA0201",20064374,51,"Wang, F., Yang, W.","Cell",139,1279,2009,"Structural insight into translesion synthesis by DNA Pol II"]
["3K58","3K57","n",2.1,2.06,73,0.2,"NA0202",20064374,52,"Wang, F., Yang, W.","Cell",139,1279,2009,"Structural insight into translesion synthesis by DNA Pol II"]
["3K59","3K57","y",1.9,1.81,82,0.2,"NA0203",20064374,52,"Wang, F., Yang, W.","Cell",139,1279,2009,"Structural insight into translesion synthesis by DNA Pol II"]
["3K5L","3K57","n",2.7,2.99,56,0.22,"NA0205",20064374,50,"Wang, F., Yang, W.","Cell",139,1279,2009,"Structural insight into translesion synthesis by DNA Pol II."]
["3K5M","3K57","y",2,2.36,46,0.24,"NA0206",20064374,51,"Wang, F., Yang, W.","Cell",139,1279,2009,"Structural insight into translesion synthesis by DNA Pol II."]
["3K5N","3K57","n",3.2,3.95,18,0.23,"NA0207",20064374,62,"Wang, F., Yang, W.","Cell",139,1279,2009,"Structural insight into translesion synthesis by DNA Pol II."]
["1PA6","1PH3","n",2.5,2.5299999999999998,69,0.26,"PD0434",12912928,59,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide shuffling and ssDNA recognition in Oxytricha nova telomere end-binding protein complexes"]
["1PH3","1PH3","y",2.2999999999999998,2.4500000000000002,64,0.23,"PD0437",12912928,59,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes"]
["1PH4","1PH3","y",2.2999999999999998,2.3199999999999998,74,0.21,"PD0438",12912928,59,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes"]
["1PH7","1PH3","n",2.9,2.92,75,0.23,"PD0441",12912928,59,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes"]
["1PH8","1PH3","n",2.4,2.69,53,0.22,"PD0442",12912928,59,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide Shuffling and Ssdna Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes"]
["1PH9","1PH3","n",2.5,2.5499999999999998,72,0.21,"PD0443",12912928,58,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes"]
["2OYQ","2OZM","n",2.9,2.82,81,0.23,"PD0979",17718515,57,"Zahn, K.E., Belrhali, H., Wallace, S.S., Doublie, S.","Biochemistry",46,10551,2007,"Caught bending the a-rule: crystal structures of translesion DNA synthesis with a non-natural nucleotide."]
["2OZM","2OZM","y",2.9,2.48,93,0.21,"PD0981",17718515,53,"Zahn, K.E., Belrhail, H., Wallace, S.S., Doublie, S.","Biochemistry",46,10551,2007,"Caught Bending the A-Rule: crystal structures of translesion DNA synthesis with a non-natural nucleotide"]
["2OZS","2OZM","n",2.8,3,59,0.22,"PD0994",17718515,54,"Zahn, K.E., Belrhali, H., Wallace, S.S., Doublie, S.","Biochemistry",46,10551,2007,"Caught bending the a-rule: crystal structures of translesion DNA synthesis with a non-natural nucleotide."]
["2P5G","2OZM","y",2.8,2.79,78,0.24,"PD0995",17718515,56,"Zahn, K.E., Belrhali, H., Wallace, S.S., Doublie, S.","Biochemistry",46,10551,2007,"Caught bending the a-rule: crystal structures of translesion DNA synthesis with a non-natural nucleotide."]
["2P5O","2OZM","n",2.8,3.58,23,0.25,"PD0985",15057283,58,"Hogg, M., Wallace, S.S., Doublie, S.","EMBO J.",23,1483,2004,"Crystallographic snapshots of a replicative DNA polymerase encountering an abasic site."]
["1L3S","1L3S","y",1.7,1.58,87,0.2,"PD0300",12649320,57,"Johnson, S.J., Taylor, J.S., Beese, L.S.","PNAS",100,3895,2003,"Processive DNA synthesis observed in a polymerase crystal suggests a  mechanism for the prevention of frameshift mutations"]
["1L3T","1L3S","n",1.7,2.0299999999999998,53,0.21,"PD0301",12649320,58,"Johnson, S.J., Taylor, J.S., Beese, L.S.","PNAS",100,3895,2003,"Processive DNA synthesis observed in a polymerase crystal suggests a  mechanism for the prevention of frameshift mutations"]
["1L3U","1L3S","y",1.8,2,63,0.2,"PD0302",12649320,57,"Johnson, S.J., Taylor, J.S., Beese, L.S.","PNAS",100,3895,2003,"Processive DNA synthesis observed in a polymerase crystal suggests a  mechanism for the prevention of frameshift mutations"]
["1L3V","1L3S","y",1.7,1.95,60,0.21,"PD0303",12649320,57,"Johnson, S.J., Taylor, J.S., Beese, L.S.","PNAS",100,3895,2003,"Processive DNA synthesis observed in a polymerase crystal suggests a  mechanism for the prevention of frameshift mutations"]
["1L5U","1L3S","n",2,1.98,73,0.2,"PD0304",12649320,57,"Johnson, S.J., Taylor, J.S., Beese, L.S.","PNAS",100,3895,2003,"Processive DNA synthesis observed in a polymerase crystal suggests a  mechanism for the prevention of frameshift mutations"]
["1NJY","1L3S","n",2,1.88,82,0.23,"PD0374",15035983,55,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["2BR0","2JEJ","n",2.2000000000000002,2.92,20,0.24,"2BR0",15965231,54,"Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P.","J.Biol.Chem.",280,29750,2005,"DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine."]
["2J6U","2JEJ","n",2.5,2.79,54,0.22,"2J6U",17105728,49,"Eoff, R.L., Irimia, A., Egli, M., Guengerich, F.P.","J.Biol.Chem.",282,1456,2007,"Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by 'Wobble' Pairing between O6- Methylguanine and Cytosine, But Accurate Bypass is Preferred."]
["2JEF","2JEJ","n",2.2000000000000002,2.77,29,0.23,"2JEF",17337730,53,"Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P.","J.Biol.Chem.",282,13573,2007,"Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing."]
["2JEG","2JEJ","y",2.4,2.5499999999999998,65,0.23,"2JEG",17337730,50,"Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P.","J.Biol.Chem.",282,13573,2007,"Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing."]
["2JEI","2JEJ","n",2.4,3.03,27,0.24,"2JEI",17337730,51,"Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P.","J.Biol.Chem.",282,13573,2007,"Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing."]
["2JEJ","2JEJ","y",1.9,2.38,36,0.24,"2JEJ",17337730,54,"Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P.","J.Biol.Chem.",282,13573,2007,"Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing."]
["2IH2","2IH2","y",1.6,1.86,62,0.16,"PD0875",null,43,"Lenz, T., Scheidig, A.J., Weinhold, E.","TBP",null,null,null,"Influence of the target base partner on the methylation rate of the adenine-specific DNA methyltransferase M.TaqI"]
["2IH4","2IH2","n",2.1,2.33,56,0.21,"PD0876",null,39,"Lenz, T., Scheidig, A.J., Weinhold, E.","TBP",null,null,null,"Influence of the target base partner on the methylation rate of the adenine-specific DNA methyltransferase M.TaqI"]
["2IH5","2IH2","n",1.8,1.72,83,0.16,"PD0877",null,44,"Lenz, T., Scheidig, A.J., Weinhold, E.","TBP",null,null,null,"Influence of the target base partner on the methylation rate of the adenine-specific DNA methyltransferase M.TaqI"]
["2IBS","2IH2","n",2.4,1.94,95,0.2,"PD0867",17455934,43,"Lenz, T., Bonnist, E.Y.M., Pljevaljcic, G., Neely, R.K., Dryden, D.T.F., Scheidig, A.J., Jones, A.C., Weinhold, E.","J.Am.Chem.Soc.",129,6240,2007,"2-Aminopurine Flipped into the Active Site of the Adenine-Specific DNA Methyltransferase M.TaqI: Crystal Structures and Time-Resolved Fluorescence"]
["2IBT","2IH2","n",1.7,1.88,65,0.17,"PD0868",17455934,42,"Lenz, T., Bonnist, E.Y.M., Pljevaljcic, G., Neely, R.K., Dryden, D.T.F., Scheidig, A.J., Jones, A.C., Weinhold, E.","J.Am.Chem.Soc.",129,6240,2007,"2-Aminopurine Flipped into the Active Site of the Adenine-Specific DNA Methyltransferase M.TaqI: Crystal Structures and Time-Resolved Fluorescence"]
["2JG3","2IH2","y",1.9,1.97,70,0.19,"2JG3",17654629,43,"Pljevaljcic, G., Schmidt, F., Scheidig, A.J., Lurz, R., Weinhold, E.","Chembiochem",8,1516,2007,"Quantitative Labeling of Long Plasmid DNA with Nanometer Precision."]
["2NP6","2IH2","n",2.1,2.4300000000000002,48,0.23,"PD0904",null,43,"Lenz, T., Scheidig, A.J., Weinhold, E.","TBP",null,null,null,"Caught in the act II: Visualization of an intermediate in the DNA base-flipping pathway induced by the adenine-specific DNA methyltransferase M.TaqI"]
["2NP7","2IH2","n",1.9,2.2599999999999998,46,0.18,"PD0905",null,45,"Lenz, T., Scheidig, A.J., Weinhold, E.","TBP",null,null,null,"Caught in the act II: Visualization of an intermediate in the DNA base-flipping pathway induced by the adenine-specific DNA methyltransferase M.TaqI"]
["3L2Q","3L2R","n",3.3,2.54,96,0.2,"NA0396",20118915,69,"Hare, S., Gupta, S.S., Valkov, E., Engelman, A., Cherepanov, P.","Nature",null,null,2010,"Retroviral intasome assembly and inhibition of DNA strand transfer"]
["3L2R","3L2R","y",2.9,2.59,90,0.2,"NA0397",20118915,68,"Hare, S., Gupta, S.S., Valkov, E., Engelman, A., Cherepanov, P.","Nature",null,null,2010,"Retroviral intasome assembly and inhibition of DNA strand transfer"]
["3L2S","3L2R","n",3,2.59,91,0.21,"NA0398",20118915,68,"Hare, S., Gupta, S.S., Valkov, E., Engelman, A., Cherepanov, P.","Nature",null,null,2010,"Retroviral intasome assembly and inhibition of DNA strand transfer"]
["3L2T","3L2R","n",2.9,2.62,87,0.21,"NA0399",20118915,68,"Hare, S., Gupta, S.S., Valkov, E., Engelman, A., Cherepanov, P.","Nature",null,null,2010,"Retroviral intasome assembly and inhibition of DNA strand transfer"]
["3L2U","3L2R","n",3.2,2.75,91,0.19,"NA0400",20118915,68,"Hare, S., Gupta, S.S., Valkov, E., Engelman, A., Cherepanov, P.","Nature",null,null,2010,"Retroviral intasome assembly and inhibition of DNA strand transfer"]
["3L2V","3L2R","n",3.2,2.82,91,0.21,"NA0401",20118915,69,"Hare, S., Gupta, S.S., Valkov, E., Engelman, A., Cherepanov, P.","Nature",null,null,2010,"Retroviral intasome assembly and inhibition of DNA strand transfer"]
["3L2W","3L2R","n",3.2,2.69,94,0.2,"NA0402",20118915,68,"Hare, S., Gupta, S.S., Valkov, E., Engelman, A., Cherepanov, P.","Nature",null,null,2010,"Retroviral intasome assembly and inhibition of DNA strand transfer"]
["1NK0","1NK0","y",1.7,1.59,86,0.2,"PD0376",15035983,53,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NK8","1NK0","y",1.9,1.6,92,0.21,"PD0381",15035983,54,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NK9","1NK0","n",1.9,2.0299999999999998,66,0.22,"PD0382",15035983,55,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NKB","1NK0","n",2,2.0499999999999998,70,0.22,"PD0383",15035983,55,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NKC","1NK0","y",1.8,1.55,92,0.2,"PD0384",15035983,53,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NJZ","1NK0","n",2,1.8,86,0.24,"PD0375",15035983,56,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NK4","1NK0","y",1.6,1.62,81,0.23,"PD0377",15035983,55,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NKE","1NK0","y",1.8,1.8,78,0.24,"PD0385",15035983,55,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["3CVS","3CW7","n",2.4,2.86,40,0.22,"PD1122",18682218,56,"Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.","Structure",16,1166,2008,"Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA."]
["3CVT","3CW7","n",2.5,2.92,44,0.22,"PD1123",18682218,56,"Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.","Structure",16,1166,2008,"Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA."]
["3CW7","3CW7","y",2.2999999999999998,2.68,47,0.22,"PD1124",18682218,56,"Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.","Structure",16,1166,2008,"Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA."]
["3CWA","3CW7","n",2.4,2.79,46,0.22,"PD1125",18682218,56,"Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.","Structure",16,1166,2008,"Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA."]
["3D4V","3CW7","n",2.9,3.35,43,0.21,"PD1147",18686953,54,"Lee, S., Bowman, B.R., Ueno, Y., Wang, S., Verdine, G.L.","J.Am.Chem.Soc.",130,11570,2008,"Synthesis and structure of duplex DNA containing the genotoxic nucleobase lesion N7-methylguanine."]
["3CWS","3CW7","y",2.2999999999999998,2.65,49,0.22,"PD1126",18682218,56,"Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.","Structure",16,1166,2008,"Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA."]
["3CWT","3CW7","n",2.2999999999999998,2.91,29,0.24,"PD1127",18682218,56,"Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.","Structure",16,1166,2008,"Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA."]
["3CWU","3CW7","n",2.8,3.11,56,0.21,"PD1142",18682218,55,"Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.","Structure",16,1166,2008,"Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA."]
["10MH","3EEO","n",2.6,2.36,86,0.21,"PD0034",9925782,65,"Sheikhnejad, G., Brank, A., Christman, J.K., Goddard, A., Alvarez, E., Ford Jr., H., Marquez, V.E., Marasco, C.J., Sufrin, J.R., O'gara, M., Cheng, X.","J.Mol.Biol.",285,2021,1999,"Mechanism of inhibition of DNA (cytosine C5)-methyltransferases by oligodeoxyribonucleotides containing 5,6-dihydro-5-azacytosine."]
["1M0E","3EEO","n",2.5,2.42,81,0.18,"PD0327",12206775,61,"Zhou, L., Cheng, X., Connolly, B.A., Dickman, M.J., Hurd, P.J., Hornby, D.P.","J.MOL.BIOL.",321,591,2002,"ZEBULARINE: A NOVEL DNA METHYLATION INHIBITOR THAT FORMS A COVALENT COMPLEX WITH DNA METHYLTRANSFERASES"]
["3EEO","3EEO","y",1.9,2.2799999999999998,46,0.24,"PD1183",null,61,"Porta, J.C., Christman, J.K., Borgstahl, G.E.O.","TBP",null,null,null,"M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation."]
["5MHT","3EEO","n",2.7,2.27,94,0.19,"PDEB123",8918941,65,"O'Gara, M., Roberts, R.J., Cheng, X.","J.Mol.Biol.",263,597,1996,"A structural basis for the preferential binding of hemimethylated DNA by HhaI DNA methyltransferase."]
["6MHT","3EEO","y",2.1,1.94,81,0.19,"PDE141",9207024,65,"Kumar, S., Horton, J.R., Jones, G.D., Walker, R.T., Roberts, R.J., Cheng, X.","NAR",25,2773,1997,"DNA containing 4'-thio-2'-deoxycytidine inhibits methylation by HhaI methyltransferase."]
["7MHT","3EEO","n",2.9,1.91,99,0.16,"PD0017",9783745,null,"O'Gara, M., Horton, J.R., Roberts, R.J., Cheng, X.","Nat.Struct.Biol.",5,872,1998,"Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base."]
["8MHT","3EEO","n",2.8,2.31,96,0.17,"PD0018",9783745,65,"O'Gara, M., Horton, J.R., Roberts, R.J., Cheng, X.","Nat.Struct.Biol.",5,872,1998,"Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base."]
["9MHT","3EEO","y",2.4,2.16,88,0.19,"PD0019",9783745,65,"O'Gara, M., Horton, J.R., Roberts, R.J., Cheng, X.","Nat.Struct.Biol.",5,872,1998,"Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base."]
["3GII","3GII","y",2.6,2.29,91,0.21,"PD1252",null,57,"Rechkoblit, O., Malinina, L., Cheng, Y., Geacintov, N.E., Broyde, S., Patel, D.J.","Structure",17,725,2009,"Impact of Conformational Heterogeneity of OxoG Lesions and Their Pairing Partners on Bypass Fidelity by Y Family Polymerases"]
["3GIJ","3GII","n",2.4,3.01,29,0.21,"PD1253",null,55,"Rechkoblit, O., Malinina, L., Cheng, Y., Geacintov, N.E., Broyde, S., Patel, D.J.","Structure",17,725,2009,"Impact of Conformational Heterogeneity of OxoG Lesions and Their Pairing Partners on Bypass Fidelity by Y Family Polymerases"]
["3GIK","3GII","n",2.9,3.21,54,0.23,"PD1254",null,60,"Rechkoblit, O., Malinina, L., Cheng, Y., Geacintov, N.E., Broyde, S., Patel, D.J.","Structure",17,725,2009,"Impact of Conformational Heterogeneity of OxoG Lesions and Their Pairing Partners on Bypass Fidelity by Y Family Polymerases"]
["3GIL","3GII","y",2.7,2.4500000000000002,89,0.2,"PD1255",null,60,"Rechkoblit, O., Malinina, L., Cheng, Y., Geacintov, N.E., Broyde, S., Patel, D.J.","Structure",17,725,2009,"Impact of Conformational Heterogeneity of OxoG Lesions and Their Pairing Partners on Bypass Fidelity by Y Family Polymerases"]
["3GIM","3GII","n",2.7,3.08,48,0.22,"PD1256",null,60,"Rechkoblit, O., Malinina, L., Cheng, Y., Geacintov, N.E., Broyde, S., Patel, D.J.","Structure",17,725,2009,"Impact of Conformational Heterogeneity of OxoG Lesions and Their Pairing Partners on Bypass Fidelity by Y Family Polymerases"]
["3KHG","3GII","n",3,2.9,81,0.21,"NA0319",null,58,"Rechkoblit, O., Kolbanovskiy, A., Malinina, L., Geacintov, N.E., Broyde, S., Patel, D.J.","TBP",null,null,null,"Y-family polymerase-facilitated mechanism of error-free bypass and semi-targeted mutagenic processing of an aromatic amine lesion"]
["3KHH","3GII","y",2.7,2.58,82,0.2,"NA0320",null,54,"Rechkoblit, O., Kolbanovskiy, A., Malinina, L., Geacintov, N.E., Broyde, S., Patel, D.J.","TBP",null,null,null,"Y-family polymerase-facilitated mechanism of error-free bypass and semi-targeted mutagenic processing of an aromatic amine lesion"]
["3KHR","3GII","y",2,2.1,67,0.21,"NA0322",null,53,"Rechkoblit, O., Kolbanovskiy, A., Malinina, L., Geacintov, N.E., Broyde, S., Patel, D.J.","TBP",null,null,null,"Y-family polymerase-facilitated mechanism of error-free bypass and semi-targeted mutagenic processing of an aromatic amine lesion"]
["1BPX","2FMP","n",2.4,4.18,1,0.25,"PDE0126",9287163,41,"Sawaya, M.R., Prasad, R., Wilson, S.H., Kraut, J., Pelletier, H.","Biochemistry",36,11205,1997,"Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism."]
["1BPY","2FMP","n",2.2000000000000002,3.75,2,0.23,"PDE0125",9287163,41,"Sawaya, M.R., Prasad, R., Wilson, S.H., Kraut, J., Pelletier, H.","Biochemistry",36,11205,1997,"Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism."]
["1BPZ","2FMP","n",2.6,4.2699999999999996,1,0.24,"PDE0124",9287163,41,"Sawaya, M.R., Prasad, R., Wilson, S.H., Kraut, J., Pelletier, H.","Biochemistry",36,11205,1997,"Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism."]
["1MQ2","2FMP","n",3.1,2.39,97,0.26,"PD0343",12517346,50,"Krahn, J.M., Beard, W.A., Miller, H., Grollman, A.P., Wilson, S.H.","Structure",11,121,2003,"Structure of DNA Polymerase beta with the Mutagenic DNA Lesion 8-oxodeoxyguanine Reveals   Structural Insights into its Coding Potential"]
["1MQ3","2FMP","n",2.8,2.71,83,0.25,"PD0344",12517346,45,"Krahn, J.M., Beard, W.A., Miller, H., Grollman, A.P., Wilson, S.H.","Structure",11,121,2003,"Structure of DNA Polymerase beta with the Mutagenic DNA Lesion 8-oxodeoxyguanine Reveals   Structural Insights into its Coding Potential"]
["1TV9","2FMP","n",2,1.64,92,0.18,"PD0563",15458631,48,"Krahn, J.M., Beard, W.M., Wilson, S.H.","Structure",12,1823,2004,"STRUCTURAL INSIGHTS INTO DNA POLYMERASE BETA DETERRENTS FOR MISINCORPORATION SUPPORT OF AN INDUCED-FIT MECHANISM FOR FIDELITY"]
["1TVA","2FMP","n",2.6,2.09,96,0.21,"PD0564",15458631,48,"Krahn, J.M., Beard, W.A., Wilson, S.H.","Structure",12,1823,2004,"Structural insights into DNA polymerase Beta deterrents for misincorporation support an induced-fit mechanism for fidelity"]
["1ZJM","2FMP","n",2.1,1.61,96,0.23,"PD0666",16084394,58,"Batra, V.K., Beard, W.A., Shock, D.D., Pedersen, L.C., Wilson, S.H.","STRUCTURE",13,1225,2005,"Nucleotide-induced DNA polymerase active site motions accommodating a mutagenic DNA intermediate."]
["1ZJN","2FMP","n",2.6,2.6,77,0.23,"PD0667",16084394,3,"Batra, V.K., Beard, W.A., Shock, D.D., Pedersen, L.C., Wilson, S.H.","STRUCTURE",13,1225,2005,"Nucleotide-induced DNA polymerase active site motions accommodating a mutagenic DNA intermediate."]
["2FMP","2FMP","y",1.7,1.0900000000000001,99,0.18,"PD0774",16615916,45,"Batra, V.K., Beard, W.A., Shock, D.D., Krahn, J.M., Pedersen, L.C., Wilson, S.H.","Structure",14,757,2006,"Magnesium-induced assembly of a complete DNA polymerase catalytic complex."]
["2FMQ","2FMP","n",2.2000000000000002,1.61,97,0.19,"PD0775",16615916,45,"Batra, V.K., Beard, W.A., Shock, D.D., Krahn, J.M., Pedersen, L.C., Wilson, S.H.","Structure",14,757,2006,"Magnesium-induced assembly of a complete DNA polymerase catalytic complex."]
["2FMS","2FMP","y",2,1.6,94,0.2,"PD0776",16615916,45,"Batra, V.K., Beard, W.A., Shock, D.D., Krahn, J.M., Pedersen, L.C., Wilson, S.H.","Structure",14,757,2006,"Magnesium-induced assembly of a complete DNA polymerase catalytic complex."]
["2I9G","2FMP","n",2.1,1.71,93,0.2,"PD0865",17079493,48,"Batra, V.K., Shock, D.D., Prasad, R., Beard, W.A., Hou, E.W., Pedersen, L.C., Sayer, J.M., Yagi, H., Kumar, S., Jerina, D.M., Wilson, S.H.","PNAS",103,17231,2006,"Structure of DNA polymerase beta with a benzo[c]phenanthrene diol epoxide-adducted template exhibits mutagenic features."]
["2ISO","2FMP","n",2.1,1.61,96,0.2,"PD0886",17209556,45,"Sucato, C.A., Upton, T.G., Kashemirov, B.A., Batra, V.K., Martinek, V., Xiang, Y., Beard, W.A., Pedersen, L.C., Wilson, S.H., McKenna, C.E., Florian, J., Warshel, A., Goodman, M.F.","Biochemistry",46,461,2007,"Modifying the beta,gamma Leaving-Group Bridging Oxygen Alters Nucleotide Incorporation Efficiency, Fidelity, and the Catalytic Mechanism of DNA Polymerase beta."]
["2ISP","2FMP","n",2.2000000000000002,1.81,93,0.2,"PD0887",17209556,45,"Sucato, C.A., Upton, T.G., Kashemirov, B.A., Batra, V.K., Martinek, V., Xiang, Y., Beard, W.A., Pedersen, L.C., Wilson, S.H., McKenna, C.E., Florian, J., Warshel, A., Goodman, M.F.","Biochemistry",46,461,2007,"Modifying the beta,gamma Leaving-Group Bridging Oxygen Alters Nucleotide Incorporation Efficiency, Fidelity, and the Catalytic Mechanism of DNA Polymerase beta."]
["2PXI","2FMP","y",2.1,1.6,96,0.21,"PD1008",18031037,45,"McKenna, C.E., Kashemirov, B.A., Upton, T.G., Batra, V.K., Goodman, M.F., Pedersen, L.C., Beard, W.A., Wilson, S.H.","J.Am.Chem.Soc.",129,15412,2007,"(R)-beta,gamma-fluoromethylene-dGTP-DNA ternary complex with DNA polymerase beta."]
["3C2K","2FMP","n",2.4,2.31,81,0.21,"PD1088",18471977,45,"Batra, V.K., Beard, W.A., Shock, D.D., Pedersen, L.C., Wilson, S.H.","Mol.Cell",30,315,2008,"Structures of DNA polymerase beta with active-site mismatches suggest a transient abasic site intermediate during misincorporation."]
["3C2L","2FMP","n",2.6,3.15,36,0.22,"PD1079",18471977,46,"Batra, V.K., Beard, W.A., Shock, D.D., Pedersen, L.C., Wilson, S.H.","Mol.Cell",30,315,2008,"Structures of DNA polymerase beta with active-site mismatches suggest a transient abasic site intermediate during misincorporation."]
["3C2M","2FMP","n",2.2000000000000002,2.12,75,0.21,"PD1090",18471977,46,"Batra, V.K., Beard, W.A., Shock, D.D., Pedersen, L.C., Wilson, S.H.","Mol.Cell",30,315,2008,"Structures of DNA polymerase beta with active-site mismatches suggest a transient abasic site intermediate during misincorporation."]
["3ISB","2FMP","n",2,1.92,79,0.21,"NA0130",19759017,49,"Beard, W.A., Shock, D.D., Batra, V.K., Pedersen, L.C., Wilson, S.H.","J.Biol.Chem.",284,31680,2009,"DNA polymerase beta substrate specificity: side chain modulation of the 'A-rule'."]
["3ISC","2FMP","n",2,1.93,79,0.19,"NA0131",19759017,49,"Beard, W.A., Shock, D.D., Batra, V.K., Pedersen, L.C., Wilson, S.H.","J.Biol.Chem.",284,31680,2009,"DNA polymerase beta substrate specificity: side chain modulation of the 'A-rule'."]
["3ISD","2FMP","n",2.6,2.34,89,0.2,"NA0132",19759017,46,"Beard, W.A., Shock, D.D., Batra, V.K., Pedersen, L.C., Wilson, S.H.","J.Biol.Chem.",284,31680,2009,"DNA polymerase beta substrate specificity: side chain modulation of the 'A-rule'."]
["7ICH","9ICW","n",2.9,4.04,8,0.15,"PDE050",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICE","9ICW","n",2.8,3.96,8,0.16,"PDE047",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICF","9ICW","n",3.1,4.0199999999999996,13,0.16,"PDE048",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICG","9ICW","n",3,3.99,11,0.16,"PDE049",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICI","9ICW","n",2.8,3.98,8,0.16,"PDE051",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICK","9ICW","n",2.9,3.97,10,0.15,"PDE053",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICL","9ICW","n",3.1,4.13,10,0.16,"PDE054",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["7ICM","9ICW","n",3,4.04,10,0.15,"PDE055",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["7ICN","9ICW","n",2.8,4.03,6,0.16,"PDE056",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICO","9ICW","n",3.3,4.1900000000000004,13,0.16,"PDE057",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICP","9ICW","n",3,3.96,12,0.16,"PDE058",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["7ICQ","9ICW","n",2.9,3.97,9,0.16,"PDE059",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICR","9ICW","n",3,4.07,9,0.16,"PDE060",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICS","9ICW","n",2.8,4.1500000000000004,4,0.2,"PDE061",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICT","9ICW","n",2.8,3.98,8,0.17,"PDE062",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["7ICU","9ICW","n",3.3,4.07,20,0.17,"PDE063",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["7ICV","9ICW","n",2.8,3.95,8,null,"PDE088",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["9ICK","9ICW","n",2.7,3.86,8,0.16,"PDE0100",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICL","9ICW","n",2.8,3.93,9,0.16,"PDE0101",8841120,59,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis"]
["9ICM","9ICW","n",2.9,3.92,11,0.16,"PDE0102",8841118,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12742,1996,"Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity"]
["9ICN","9ICW","n",3,4.05,9,0.15,"PDE0103",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICO","9ICW","n",2.9,3.98,9,0.15,"PDE0104",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICP","9ICW","n",3.1,4.17,8,0.17,"PDE0105",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICQ","9ICW","n",2.9,4.03,8,0.17,"PDE0106",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICR","9ICW","n",3,4.07,9,0.16,"PDE0107",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICS","9ICW","n",2.9,4.09,6,0.17,"PDE0108",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICT","9ICW","n",3,3.99,11,0.16,"PDE0109",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICU","9ICW","n",2.9,4,9,0.17,"PDE0110",8841119,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICW","9ICW","y",2.6,3.82,6,0.18,"PDE0112",8841118,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12742,1996,"Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity"]
["9ICX","9ICW","n",2.6,3.93,4,0.18,"PDE0113",8841118,59,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12742,1996,"Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity"]
["1ZQA","1ZQP","n",3.2,4.01,16,0.15,"PDE027",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQB","1ZQP","n",3.2,4.2,8,0.15,"PDE028",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQC","1ZQP","n",3.2,4.13,12,0.17,"PDE029",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQF","1ZQP","n",2.9,4.08,7,0.18,"PDE032",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQG","1ZQP","n",3.1,4.13,10,0.16,"PDE033",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQH","1ZQP","n",3.1,4.2,7,0.23,"PDE034",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQI","1ZQP","n",2.7,4,5,0.18,"PDE035",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQJ","1ZQP","n",3.3,4.34,7,0.21,"PDE036",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQK","1ZQP","n",3.2,4.1500000000000004,11,0.15,"PDE037",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQL","1ZQP","n",3.3,4.1399999999999997,16,0.16,"PDE038",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQM","1ZQP","n",3.2,4.1100000000000003,13,0.15,"PDE039",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQN","1ZQP","n",3,4,11,0.18,"PDE040",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQO","1ZQP","n",3.2,4.07,15,0.16,"PDE041",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQP","1ZQP","y",2.8,3.9,10,0.17,"PDE042",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQQ","1ZQP","n",3.3,4.2699999999999996,8,0.16,"PDE043",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["1ZQS","1ZQP","n",3.3,4.09,19,0.17,"PDE045",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["8ICA","1ZQP","n",3,4.05,9,0.16,"PDE089",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["8ICB","1ZQP","n",3.1,4.13,10,0.15,"PDE064",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["8ICC","1ZQP","n",2.8,4.0199999999999996,7,0.17,"PDE065",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["8ICE","1ZQP","n",3.2,4.18,9,0.17,"PDE066",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["8ICF","1ZQP","n",2.9,4.12,6,0.19,"PDE067",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["8ICG","1ZQP","n",3.3,4.1900000000000004,13,0.14000000000000001,"PDE068",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["8ICH","1ZQP","n",3.3,4.09,19,0.17,"PDE069",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["8ICI","1ZQP","n",2.8,4.09,5,0.17,"PDE070",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["8ICJ","1ZQP","n",3.2,4.18,9,0.17,"PDE071",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["8ICK","1ZQP","n",2.7,4.01,5,0.17,"PDE072",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["8ICL","1ZQP","n",3.1,4.1100000000000003,10,0.16,"PDE073",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["8ICM","1ZQP","n",2.9,3.98,9,0.18,"PDE074",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["8ICN","1ZQP","n",2.8,4.08,5,0.17,"PDE075",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["8ICO","1ZQP","n",2.7,4.0199999999999996,4,0.18,"PDE076",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["8ICP","1ZQP","n",2.9,4.07,7,0.17,"PDE077",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["8ICQ","1ZQP","n",3,4.05,9,0.16,"PDE078",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["8ICR","1ZQP","n",2.9,4.09,6,0.17,"PDE079",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["8ICS","1ZQP","n",2.9,4.1100000000000003,6,0.17,"PDE080",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta."]
["8ICT","1ZQP","n",3.1,4.21,6,0.17,"PDE081",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["8ICU","1ZQP","n",3,4.13,7,0.18,"PDE082",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["8ICV","1ZQP","n",3.2,4.1500000000000004,11,0.16,"PDE083",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["8ICW","1ZQP","n",3.3,4.3,8,0.16,"PDE084",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["8ICX","1ZQP","n",3,4.0999999999999996,8,0.16,"PDE085",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["8ICY","1ZQP","n",3.1,4.25,5,0.17,"PDE086",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["8ICZ","1ZQP","n",3.1,4.1100000000000003,10,0.16,"PDE087",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["9ICA","1ZQP","n",3,4.1100000000000003,8,0.17,"PDE091",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["9ICB","1ZQP","n",3.2,4.21,8,0.15,"PDE092",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["9ICC","1ZQP","n",3.1,4.21,6,0.16,"PDE093",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["9ICE","1ZQP","n",3.3,4.3600000000000003,6,0.19,"PDE094",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["9ICF","1ZQP","n",3,4.16,6,0.16,"PDE095",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICG","1ZQP","n",3,4.1399999999999997,7,0.16,"PDE096",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["9ICH","1ZQP","n",2.9,4.05,7,0.18,"PDE097",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["9ICI","1ZQP","n",3.1,4.21,6,0.17,"PDE098",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis."]
["9ICJ","1ZQP","n",3.1,4.16,8,0.15,"PDE099",8841120,58,"Pelletier, H., Sawaya, M.R.","Biochemistry",35,12778,1996,"Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis"]
["9ICV","1ZQP","n",2.7,4.0199999999999996,4,0.18,"PDE0111",8841119,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12762,1996,"A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta"]
["9ICY","1ZQP","n",3,4.12,7,0.18,"PDE0114",8841118,58,"Pelletier, H., Sawaya, M.R., Wolfle, W., Wilson, S.H., Kraut, J.","Biochemistry",35,12742,1996,"Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity"]
["++++++++++weaker similarities++++++++++"]
["2VJV","2VJV","y",1.9,1.89,76,0.19,"2VJV",18243097,51,"Barabas, O., Ronning, D.R., Guynet, C., Hickman, A.B., Ton-Hoang, B., Chandler, M., Dyda, F.","Cell",132,208,2008,"Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection."]
["1GA5","2VJV","y",2.4,3.18,20,0.24,"PD0191",11669620,51,"Sierk, M.L., Zhao, Q., Rastinejad, F.","Biochemistry",40,12833,2001,"DNA Deformability as a Recognition Feature in the RevErb Response Element"]
["1CMA","1MJ2","n",2.8,3.44,31,0.22,"PDR008",1406951,59,"Somers, W.S., Phillips, S.E.","Nature",359,387,1992,"Crystal structure of the met repressor-operator complex at 2.8 A resolution reveals DNA recognition by beta-strands."]
["1MJ2","1MJ2","y",2.4,3.15,21,0.21,"PD0173",10986458,58,"Garvie, C.W., Phillips, S.E.","Structure Fold.Des.",8,905,2000,"Direct and indirect readout in mutant Met repressor-operator complexes."]
["1CYQ","1CZ0","n",1.9,2.2000000000000002,52,0.2,"PD0096",10581547,64,"Galburt, E.A., Chevalier, B., Tang, W., Jurica, M.S., Flick, K.E., Monnat Jr., R.J., Stoddard, B.L.","Nat.Struct.Biol.",6,1096,1999,"A novel endonuclease mechanism directly visualized for I-PpoI."]
["1CZ0","1CZ0","y",2.1,2.11,73,0.19,"PD0097",10581547,64,"Galburt, E.A., Chevalier, B., Tang, W., Jurica, M.S., Flick, K.E., Monnat Jr., R.J., Stoddard, B.L.","Nat.Struct.Biol.",6,1096,1999,"A novel endonuclease mechanism directly visualized for I-PpoI."]
["2BSQ","2H1O","n",3,3.4,45,0.21,"2BSQ",16982615,67,"Mattison, K., Wilbur, J.S., So, M., Brennan, R.G.","J.Biol.Chem.",281,37942,2006,"Structure of Fitab from Neisseria Gonorrhoeae Bound to DNA Reveals a Tetramer of Toxin-Antitoxin Heterodimers Containing Pin Domains and Ribbon-Helix-Helix Motifs."]
["2H1O","2H1O","y",3,3.38,47,0.27,"PD0814",16982615,66,"Mattison, K., Wilbur, J.S., So, M., Brennan, R.G.","J.Biol.Chem.",281,37942,2006,"Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs."]
["1O3Q","1O3Q","y",3,3.37,47,0.25,"PD0398",11724532,69,"Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.","J.Mol.Biol.",314,63,2001,"Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: DNA Binding Specificity Based on Energetics of DNA Kinking"]
["1O3S","1O3Q","n",3,3.39,46,0.26,"PD0400",11724533,70,"Chen, S., Gunasekera, A., Zhang, X., Kunkel, T.A., Ebright, R.H., Berman, H.M.","J.Mol.Biol.",314,75,2001,"Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: Alteration of DNA Binding Specificity Through Alteration of DNA Kinking"]
["3BI3","3BIE","n",1.9,1.58,93,0.22,"PD1059",18432238,51,"Yang, C.G., Yi, C., Duguid, E.M., Sullivan, C.T., Jian, X., Rice, P.A., He, C.","Nature",452,961,2008,"Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA."]
["3BIE","3BIE","y",1.7,1.39,95,0.19,"PD1055",18432238,52,"Yang, C.-G., Yi, C., Duguid, E.M., Sullivan, C.T., Jian, X., Rice, P.A., He, C.","Nature",452,961,2008,"Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA"]
["1A3Q","1A3Q","y",2.1,3.31,5,0.22,"PDR032",9384586,49,"Cramer, P., Larson, C.J., Verdine, G.L., Muller, C.W.","EMBO J.",16,7078,1997,"Structure of the human NF-kappaB p52 homodimer-DNA complex at 2.1 A resolution."]
["3DO7","1A3Q","n",3.1,4.07,10,0.23,"PD1158",null,59,"Fusco, A., Huang, D.B., Miller, D., Vu, D., Ghosh, G.","TBP",null,null,null,"NF-kapppaB p52:RelB heterodimer uses different binding modes to recognize different kappaB DNA"]
["1P8K","3EH8","n",2.6,3.61,11,0.25,"PD0433",14633971,55,"Bolduc, J.M., Spiegel, P.C., Chatterjee, P., Brady, K.L., Downing, M.E., Caprara, M.G., Waring, R.B., Stoddard, B.L.","Genes Dev.",17,2875,2003,"Structural and biochemical analyses of DNA and RNA binding by a bifunctional homing endonuclease and group I intron splicing factor."]
["3EH8","3EH8","y",2.7,2.77,71,0.2,"PD1186",19103658,57,"Takeuchi, R., Certo, M., Caprara, M.G., Scharenberg, A.M., Stoddard, B.L.","NAR",null,null,2008,"Optimization of in vivo activity of a bifunctional homing endonuclease and maturase reverses evolutionary degradation."]
["1BY4","1DSZ","n",2.1,4.13,0,0.23,"PD0071",10669605,47,"Zhao, Q., Chasse, S.A., Devarakonda, S., Sierk, M.L., Ahvazi, B., Rastinejad, F.","J.Mol.Biol.",296,509,2000,"Structural basis of RXR-DNA interactions."]
["1DSZ","1DSZ","y",1.7,1.94,61,0.2,"PD0115",10698945,47,"Rastinejad, F., Wagner, T., Zhao, Q., Khorasanizadeh, S.","EMBO J.",19,1045,2000,"Structure of the RXR-RAR DNA-binding complex on the retinoic acid response element DR1."]
["1J75","1J75","y",1.9,1.88,75,0.23,"PD0215",11524677,52,"Schwartz, T., Behlke, J., Lowenhaupt, K., Heinemann, U., Rich, A.","Nat.Struct.Biol.",8,761,2001,"Structure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins."]
["2HEO","1J75","n",1.7,2.31,29,0.25,"PD0823",17165772,53,"Magis, C., Gasparini, D., Lecoq, A., Le Du, M.H., Stura, E., Charbonnier, J.B., Mourier, G., Boulain, J.C., Pardo, L., Caruana, A., Joly, A., Lefranc, M., Masella, M., Menez, A., Cuniasse, P.","J.Am.Chem.Soc.",128,16190,2006,"Structure-based secondary structure-independent approach to design protein ligands: Application to the design of Kv1.2 potassium channel blockers."]
["1ORN","1ORN","y",1.7,1.78,74,0.24,"PD0396",12840008,50,"Fromme, J.C., Verdine, G.L.","EMBO J.",22,3461,2003,"Structure of a Trapped Endonuclease III-DNA Covalent Intermediate"]
["1P59","1ORN","n",2.5,2.4300000000000002,80,0.21,"PD0427",12840008,44,"Fromme, J.C., Verdine, G.L.","EMBO J.",22,3461,2003,"Structure of a Trapped Endonuclease III-DNA Covalent Intermediate"]
["1RRQ","1RRS","n",2.2000000000000002,2.82,27,0.23,"PD0495",14961129,47,"Fromme, J.C., Banerjee, A., Huang, S.J., Verdine, G.L.","Nature",427,652,2004,"Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase"]
["1RRS","1RRS","y",2.4,2.8,45,0.23,"PD0496",14961129,47,"Fromme, J.C., Banerjee, A., Huang, S.J., Verdine, G.L.","Nature",427,652,2004,"Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase"]
["1BNK","1EWN","n",2.7,2.72,75,0.22,"PD0009",9790531,56,"Lau, A.Y., Scharer, O.D., Samson, L., Verdine, G.L., Ellenberger, T.","Cell",95,249,1998,"Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision."]
["1EWN","1EWN","y",2.1,2.31,58,0.23,"PD0141",11106395,48,"Lau, A.Y., Wyatt, M.D., Glassner, B.J., Samson, L.D., Ellenberger, T.","PNAS",97,13573,2000,"Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG."]
["2IIE","2IIE","y",2.4,2.9,38,0.23,"PD0878",17276457,52,"Bao, Q., Chen, H., Liu, Y., Yan, J., Droge, P., Davey, C.A.","J.Mol.Biol.",367,731,2007,"A Divalent Metal-mediated Switch Controlling Protein-induced DNA Bending"]
["2IIF","2IIE","n",2.7,2.99,56,0.24,"PD0879",17276457,52,"Bao, Q., Chen, H., Liu, Y., Yan, J., Droge, P., Davey, C.A.","J.Mol.Biol.",367,731,2007,"A Divalent Metal-mediated Switch Controlling Protein-induced DNA Bending"]
["3CVW","3CVW","y",3.2,1.62,100,0.28000000000000003,"PD1118",null,49,"Maul, M.J., Barends, T., Glas, A.F., Cryle, M.J., Schneider, S., Domratcheva, T., Schlichting, I., Carell, T.","TBP",null,null,null,"Structure and mechanism of a cofactor f0  accelerated (6-4) photolyase from the fruit fly"]
["3CVX","3CVW","n",3.2,2.0299999999999998,100,0.23,"PD1119",null,49,"Maul, M.J., Barends, T., Glas, A.F., Cryle, M.J., Schneider, S., Domratcheva, T., Schlichting, I., Carell, T.","TBP",null,null,null,"Structure and mechanism of a coenzyme F0  accelerated (6-4) photolyase from the fruit fly"]
["3I0W","3I0W","y",1.7,1.72,79,0.2,"NA0065",19747886,56,"Faucher, F., Wallace, S.S., Doublie, S.","Dna Repair",8,1283,2009,"Structural basis for the lack of opposite base specificity of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase."]
["3I0X","3I0W","n",1.8,1.7,84,0.19,"NA0066",19747886,56,"Faucher, F., Wallace, S.S., Doublie, S.","Dna Repair",8,1283,2009,"Structural basis for the lack of opposite base specificity of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase."]
["1RZR","1RZR","y",2.8,4.13,4,0.24,"PD0507",15369672,64,"Schumacher, M.A., Allen, G.S., Diel, M., Seidel, G., Hillen, W., Brennan, R.G.","Cell",118,731,2004,"Structural basis for allosteric control of the transcription regulator CcpA by the phosphoprotein HPr-Ser46-P."]
["1ZVV","1RZR","n",3,3.96,12,0.24,"PD0684",16316990,53,"Schumacher, M.A., Seidel, G., Hillen, W., Brennan, R.G.","J.Biol.Chem.",281,6793,2006,"Phosphoprotein Crh-Ser46-P displays altered binding to CcpA to effect carbon catabolite regulation."]
["1L1T","1L1T","y",1.8,1.94,68,0.21,"PD0292",12055620,58,"Fromme, J.C., Verdine, G.L.","Nat.Struct.Biol.",9,544,2002,"Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM."]
["2F5N","1L1T","n",2,2.33,48,0.2,"PD0749",16497933,55,"Banerjee, A., Santos, W.L., Verdine, G.L.","Science",311,1153,2006,"Structure of a DNA glycosylase searching for lesions."]
["3DNV","3DNV","y",2.7,3.06,49,0.23,"PD1154",19150849,62,"Schumacher, M.A., Piro, K.M., Xu, W., Hansen, S., Lewis, K., Brennan, R.G.","Science",323,396,2009,"Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB."]
["3HZI","3DNV","n",3,3.78,21,0.27,"NA0055",19150849,63,"Schumacher, M.A., Piro, K.M., Xu, W., Hansen, S., Lewis, K., Brennan, R.G.","Science",323,396,2009,"Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB."]
["1T38","1T38","y",3.2,3.23,69,0.26,"PD0541",15221026,61,"Daniels, D.S., Woo, T.T., Luu, K.X., Noll, D.M., Clarke, N.D., Pegg, A.E., Tainer, J.A.","Nature SMB",11,714,2004,"DNA binding and nucleotide flipping by the human DNA repair protein AGT."]
["1T39","1T38","n",3.3,3.6,52,0.3,"PD0542",15221026,57,"Daniels, D.S., Woo, T.T., Luu, K.X., Noll, D.M., Clarke, N.D., Pegg, A.E., Tainer, J.A.","Nature SMB",11,714,2004,"DNA binding and nucleotide flipping by the human DNA repair protein AGT."]
["1JB7","1JB7","y",1.9,2.2999999999999998,42,0.23,"PD0218",11428895,51,"Horvath, M.P., Schultz, S.C.","J.Mol.Biol.",310,367,2001,"DNA G-quartets in a 1.86 A resolution structure of an Oxytricha nova telomeric protein-DNA complex."]
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["1MHD","1OZJ","n",2.8,3.72,16,0.21,"PD0243",9741623,36,"Shi, Y., Wang, Y.F., Jayaraman, L., Yang, H., Massague, J., Pavletich, N.P.","Cell",94,585,1998,"Crystal structure of a Smad MH1 domain bound to DNA: insights on DNA binding in TGF-beta signaling."]
["1OZJ","1OZJ","y",2.4,3.4,11,0.21,"PD0409",12686552,45,"Chai, J., Wu, J.-W., Yan, N., Massague, J., Pavletich, N.P., Shi, Y.","J.Biol.Chem.",278,20327,2003,"Features of a Smad3 MH1-DNA complex. Roles of water and zinc in DNA binding."]
["1IHF","1IHF","y",2.2000000000000002,1.71,96,0.19,"PDT040",8980235,58,"Rice, P.A., Yang, S., Mizuuchi, K., Nash, H.A.","Cell",87,1295,1996,"Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn."]
["1OUZ","1IHF","n",2.4,2.2400000000000002,85,0.24,"PD0405",12842466,57,"Lynch, T.W., Read, E.K., Mattis, A.N., Gardner, J.F., Rice, P.A.","J.Mol.Biol.",330,493,2003,"Integration Host Factor: putting a twist on protein-DNA recognition"]
["1M5X","1M5X","y",2.2999999999999998,2.82,31,0.22,"PD0335",12758074,40,"Chevalier, B., Turmel, M., Lemieux, C., Monnat, R.J., Stoddard, B.L.","J.Mol.Biol.",329,253,2003,"Flexible DNA Target Site Recognition by Divergent Homing Endonuclease Isoschizomers I-CreI and I-MsoI"]
["3FD2","1M5X","y",2.7,2.98,56,0.22,"PD1210",19153140,36,"Li, H., Pellenz, S., Ulge, U., Stoddard, B.L., Monnat, R.J.","NAR",37,1650,2009,"Generation of single-chain LAGLIDADG homing endonucleases from native homodimeric precursor proteins."]
["1MM8","1MUH","n",2.8,3.23,47,0.22,"PD0340",12367522,62,"Steiniger-White, M., Bhasin, A., Lovell, S., Rayment, I., Reznikoff, W.S.","J.Mol.Biol.",322,971,2002,"Evidence for 'unseen' Transposase--DNA contacts"]
["1MUH","1MUH","y",2.2999999999999998,3.29,12,0.21,"PD0347",10884228,62,"Davies, D.R., Goryshin, I.Y., Reznikoff, W.S., Rayment, I.","Science",289,77,2000,"Three-dimensional structure of the Tn5 synaptic complex transposition intermediate."]
["1K3W","1K3W","y",1.4,1.85,51,0.17,"PD0253",11847126,61,"Zharkov, D.O., Golan, G., Gilboa, R., Fernandes, A.S., Gerchman, S.E., Kycia, J.H., Rieger, R.A., Grollman, A.P., Shoham, G.","EMBO J.",21,789,2002,"Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate."]
["2OPF","1K3W","n",1.9,2.2000000000000002,48,0.24,"PD0969",null,60,"Golan, G., Zharkov, D.O., Grollman, A.P., Shoham, G.","TBP",null,null,null,"Active site plasticity of endonuclease VIII: Conformational changes compensating for different substrates and mutations of critical residues"]
["3GPY","3GPY","y",1.9,1.45,96,0.17,"PD1266",20010681,55,"Qi, Y., Spong, M.C., Nam, K., Banerjee, A., Jiralerspong, S., Karplus, M., Verdine, G.L.","Nature",462,762,2009,"Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme."]
["3JR4","3GPY","n",2.6,1.71,99,0.19,"NA0139",19889642,55,"Qi, Y., Spong, M.C., Nam, K., Karplus, M., Verdine, G.L.","J.Biol.Chem.",285,1468,2010,"Entrapment and structure of an extrahelical guanine attempting to enter the active site of a bacterial DNA glycosylase, MutM."]
["1YQK","1YQK","y",2.5,2.67,63,0.24,"PD0629",15800616,null,"Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.","Nature",434,612,2005,"Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA."]
["2I5W","1YQK","n",2.6,3.01,46,0.23,"PD0873",17015827,60,"Banerjee, A., Verdine, G.L.","PNAS",103,15020,2006,"A nucleobase lesion remodels the interaction of its normal neighbor in a DNA glycosylase complex."]
["2AC0","3D0A","n",1.8,1.98,64,0.16,"PD0692",16793544,44,"Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shaulov, L., Haran, T.E., Shakked, Z.","Mol.Cell",22,741,2006,"Structural Basis of DNA Recognition by p53 Tetramers"]
["3D0A","3D0A","y",1.8,1.58,90,0.19,"PD1137",18996393,46,"Suad, O., Rozenberg, H., Brosh, R., Diskin-Posner, Y., Kessler, N., Shimon, L.J.W., Frolow, F., Liran, A., Rotter, V., Shakked, Z.","J.Mol.Biol.",385,249,2009,"Structural basis of restoring sequence-specific DNA binding and transactivation to mutant p53 by suppressor mutations"]
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["1QP9","1HWT","n",2.8,3.23,47,0.26,"PD0148",11024163,60,"Lukens, A.K., King, D.A., Marmorstein, R.","NAR",28,3853,2000,"Structure of HAP1-PC7 bound to DNA: implications for DNA recognition and allosteric effects of DNA-binding on transcriptional activation."]
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["2UVR","2UVV","n",2.9,3.35,43,0.23,"2UVR",17468100,56,"Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P.","J.Biol.Chem.",282,19831,2007,"Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4."]
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["2HHW","2HHW","y",1.9,1.72,86,0.2,"PD0829",17179038,53,"Warren, J.J., Forsberg, L.J., Beese, L.S.","PNAS",103,19701,2006,"The structural basis for the mutagenicity of O6-methyl-guanine lesions."]
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["1QSS","1QTM","n",2.2999999999999998,2.93,28,0.23,"PD0066",10449720,45,"Li, Y., Mitaxov, V., Waksman, G.","PNAS",96,9491,1999,"Structure-based design of Taq DNA polymerases with improved properties of dideoxynucleotide incorporation."]
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["1R4O","1LAT","y",2.5,3.94,3,null,"PD0475",1865905,65,"Luisi, B.F., Xu, W.X., Otwinowski, Z., Freedman, L.P., Yamamoto, K.R., Sigler, P.B.","Nature",352,497,1991,"Crystallographic Analysis of the Interaction of The Glucocorticoid Receptor with DNA"]
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["1QRH","1QPS","y",2.5,2.9,46,0.16,"PD0062",null,59,"Choi, J., Kim, Y., Greene, P., Hager, P., Rosenberg, J. M.","TBP",null,null,null,"X-Ray Structure of the DNA-Eco RI Endonuclease Complexes with the ED144 and RK145 Mutations"]
["1QRI","1QPS","n",2.6,2.8,62,0.16,"PD0063",null,59,"Choi, J., Kim, Y., Greene, P., Hager, P., Rosenberg, J.M.","TBP",null,null,null,"X-Ray Structure of the DNA-Eco RI Endonuclease Complexes with the ED144 and RK145 Mutations"]
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["1J59","1CGP","y",2.5,3.9,3,0.2,"PD0299",8757802,59,"Parkinson, G., Wilson, C., Gunasekera, A., Ebright, Y.W., Ebright, R.E., Berman, H.M.","J.Mol.Biol.",260,395,1996,"Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface."]
["1RUO","1CGP","n",2.7,4.21,2,0.21,"PDR025",8836098,59,"Parkinson, G., Gunasekera, A., Vojtechovsky, J., Zhang, X., Kunkel, T.A., Berman, H., Ebright, R.H.","Nat.Struct.Biol.",3,837,1996,"Aromatic hydrogen bond in sequence-specific protein DNA recognition."]
["1A73","1A73","y",1.8,2.0499999999999998,59,0.21,"PD0002",9665136,60,"Flick, K.E., Jurica, M.S., Monnat Jr., R.J., Stoddard, B.L.","Nature",394,96,1998,"DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI."]
["1EVW","1A73","n",3.1,3.4,53,0.27,"PD0140",10891275,61,"Galburt, E.A., Chadsey, M.S., Jurica, M.S., Chevalier, B.S., Erho, D., Tang, W., Monnat Jr., R.J., Stoddard, B.L.","J.Mol.Biol.",300,877,2000,"Conformational changes and cleavage by the homing endonuclease I-PpoI: a critical role for a leucine residue in the active site."]
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["2E42","1E43","y",1.6,1.8,90,0.23,"PD0944",null,67,"Tahirov, T.H., Inoue-Bungo, T., Sato, K., Shiina, M., Hamada, K., Ogata, K.","TBP",null,null,null,"Structural Basis for Flexible Base Recognition by C/Ebpbeta"]
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["1XSN","3C5G","n",2,2.23,53,0.21,"PD0605",15608652,54,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Kunkel, T.A., Pedersen, L.C.","Nature SMB",12,97,2005,"A closed conformation for the Pol lambda catalytic cycle."]
["3C5F","3C5G","n",2.2999999999999998,2.02,87,0.22,"PD1089",18369368,65,"Bebenek, K., Garcia-Diaz, M., Foley, M.C., Pedersen, L.C., Schlick, T., Kunkel, T.A.","Embo Rep.",9,459,2008,"Substrate-induced DNA strand misalignment during catalytic cycling by DNA polymerase lambda."]
["3C5G","3C5G","y",2.2000000000000002,1.75,95,0.2,"PD1141",18369368,65,"Bebenek, K., Garcia-Diaz, M., Foley, M.C., Pedersen, L.C., Schlick, T., Kunkel, T.A.","Embo Rep.",9,459,2008,"Substrate-induced DNA strand misalignment during catalytic cycling by DNA polymerase lambda."]
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["1E3M","1E3M","y",2.2000000000000002,2.48,53,0.23,"1E3M",11048711,55,"Lamers, M.H., Perrakis, A., Enzlin, J.H., Winterwerp, H.H.K., De Wind, N., Sixma, T.K.","Nature",407,711,2000,"The Crystal Structure of DNA Mismatch Repair Protein Muts Binding to a G X T Mismatch"]
["1NG9","1E3M","n",2.6,2.23,93,0.22,"PD0367",12554674,57,"Lamers, M.H., Winterwerp, H.H.K., Sixma, T.K.","EMBO J.",22,746,2003,"The alternating ATPase domains of MutS control DNA mismatch repair"]
["1WB9","1WB9","y",2.1,2.0499999999999998,78,0.19,"1WB9",16407973,56,"Lebbink, J.H.G., Georgijevic, D., Natrajan, G., Fish, A., Winterwerp, H.H.K., Sixma, T.K., De Wind, N.","EMBO J.",25,409,2006,"Dual Role of Muts Glutamate 38 in DNA Mismatch Discrimination and in the Authorization of Repair."]
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["3GP1","3GP1","y",2.1,1.54,96,0.19,"PD1270",20010681,57,"Qi, Y., Spong, M.C., Nam, K., Banerjee, A., Jiralerspong, S., Karplus, M., Verdine, G.L.","Nature",462,762,2009,"Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme"]
["3GPP","3GP1","n",2.2000000000000002,1.9,88,0.2,"PD1263",20010681,55,"Qi, Y., Spong, M.C., Nam, K., Banerjee, A., Jiralerspong, S., Karplus, M., Verdine, G.L.","Nature",462,762,2009,"Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme."]
["3GO8","3GPU","n",1.9,1.47,96,0.19,"PD1277",20010681,58,"Qi, Y., Spong, M.C., Nam, K., Banerjee, A., Jiralerspong, S., Karplus, M., Verdine, G.L.","Nature",462,762,2009,"Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme"]
["3GPU","3GPU","y",1.6,1.4,94,0.19,"PD1264",20010681,57,"Qi, Y., Spong, M.C., Nam, K., Banerjee, A., Jiralerspong, S., Karplus, M., Verdine, G.L.","Nature",462,762,2009,"Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme."]
["3GPX","3GPU","n",1.8,1.32,98,0.19,"PD1265",20010681,57,"Qi, Y., Spong, M.C., Nam, K., Banerjee, A., Jiralerspong, S., Karplus, M., Verdine, G.L.","Nature",462,762,2009,"Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme."]
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["2HMI","2HMI","y",2.8,3.89,10,0.27,"PD0005",9837729,76,"Ding, J., Das, K., Hsiou, Y., Sarafianos, S.G., Clark Jr., A.D., Jacobo-Molina, A., Tantillo, C., Hughes, S.H., Arnold, E.","J.Mol.Biol.",284,1095,1998,"Structure and functional implications of the polymerase active site region in a complex of HIV-1 RT with a double-stranded DNA template-primer and an antibody Fab fragment at 2.8 A resolution."]
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["1B96","1AZ0","n",2.2999999999999998,2.78,38,0.19,"PD0039",10446231,40,"Thomas, M.P., Brady, R.L., Halford, S.E., Sessions, R.B., Baldwin, G.S.","NAR",27,3438,1999,"Structural analysis of a mutational hot-spot in the EcoRV restriction endonuclease: a catalytic role for a main chain carbonyl group."]
["1B97","1AZ0","n",1.9,2.39,36,0.22,"PD0040",10446231,null,"Thomas, M.P., Brady, R.L., Halford, S.E., Sessions, R.B., Baldwin, G.S.","NAR",27,3438,1999,"Structural analysis of a mutational hot-spot in the EcoRV restriction endonuclease: a catalytic role for a main chain carbonyl group."]
["1BSS","1AZ0","n",2.2000000000000002,3.15,10,0.18,"PDE0139",9811827,43,"Horton, N.C., Newberry, K.J., Perona, J.J.","PNAS",95,13489,1998,"Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases"]
["2GE5","1AZ0","n",2.4,3.15,21,0.22,"PD0790",16981705,51,"Hiller, D.A., Perona, J.J.","Biochemistry",45,11453,2006,"Positively Charged C-Terminal Subdomains of EcoRV Endonuclease: Contributions to DNA Binding, Bending, and Cleavage."]
["1AZP","1WTO","n",1.6,2.5499999999999998,12,0.21,"PDR047",9515968,56,"Robinson, H., Gao, Y.G., McCrary, B.S., Edmondson, S.P., Shriver, J.W., Wang, A.H.","Nature",392,202,1998,"The hyperthermophile chromosomal protein Sac7d sharply kinks DNA."]
["1WTO","1WTO","y",1.5,2.02,40,0.21,"PD0609",15653643,40,"Chen, C.-Y., Ko, T.-P., Lin, T.-W., Chou, C.-C., Chen, C.-J., Wang, A.H.-J.","NAR",33,430,2005,"Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d"]
["1WTR","1WTO","n",1.8,2.77,11,0.23,"PD0612",15653643,51,"Chen, C.-Y., Ko, T.-P., Lin, T.-W., Chou, C.-C., Chen, C.-J., Wang, A.H.-J.","NAR",33,430,2005,"Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d"]
["1WTW","1WTO","n",2.2000000000000002,2.46,54,0.23,"PD0614",15653643,50,"Chen, C.-Y., Ko, T.-P., Lin, T.-W., Chou, C.-C., Chen, C.-J., Wang, A.H.-J.","NAR",33,430,2005,"Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d"]
["1WVL","1WTO","n",2.6,3.24,30,0.28000000000000003,"PD0619",16028219,62,"Wu, S.W., Ko, T.P., Chou, C.C., Wang, A.H.","Proteins",60,617,2005,"Design and characterization of a multimeric DNA binding protein using Sac7d and GCN4 as templates"]
["1XYI","1WTO","y",1.5,2.31,18,0.22,"PD0607",15653643,44,"Chen, C.-Y., Ko, T.-P., Lin, T.-W., Chou, C.-C., Chen, C.-J., Wang, A.H.-J.","NAR",33,430,2005,"Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d"]
["1WTP","1WTP","y",1.9,2.7,16,0.23,"PD0610",15653643,35,"Chen, C.-Y., Ko, T.-P., Lin, T.-W., Chou, C.-C., Chen, C.-J., Wang, A.H.-J.","NAR",33,430,2005,"Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d"]
["2NOB","2NOH","y",2.1,2.58,35,0.23,"PD0891",17114185,57,"Radom, C.T., Banerjee, A., Verdine, G.L.","J.Biol.Chem.",282,9182,2007,"Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations."]
["2NOE","2NOH","n",2.2000000000000002,2.4900000000000002,51,0.23,"PD0892",17114185,57,"Radom, C.T., Banerjee, A., Verdine, G.L.","J.Biol.Chem.",282,9182,2007,"Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations."]
["2NOF","2NOH","n",2.4,2.46,67,0.23,"PD0893",17114185,57,"Radom, C.T., Banerjee, A., Verdine, G.L.","J.Biol.Chem.",282,9182,2007,"Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations."]
["2NOH","2NOH","y",2,2.36,45,0.21,"PD0894",17114185,57,"Radom, C.T., Banerjee, A., Verdine, G.L.","J.Biol.Chem.",282,9182,2007,"Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations."]
["2NOI","2NOH","n",2.4,2.7,48,0.23,"PD0895",17114185,56,"Radom, C.T., Banerjee, A., Verdine, G.L.","J.Biol.Chem.",282,9182,2007,"Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations."]
["2NOL","2NOH","n",2.6,2.76,65,0.21,"PD0896",17114185,56,"Radom, C.T., Banerjee, A., Verdine, G.L.","J.Biol.Chem.",282,9182,2007,"Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations."]
["2NOZ","2NOH","n",2.4,2.5499999999999998,66,0.24,"PD0897",17114185,56,"Radom, C.T., Banerjee, A., Verdine, G.L.","J.Biol.Chem.",282,9182,2007,"Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations."]
["1A1F","1A1I","n",2.1,2.31,58,0.23,"PDT055",9562555,43,"Elrod-Erickson, M., Benson, T.E., Pabo, C.O.","Structure",6,451,1998,"High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition."]
["1A1H","1A1I","n",1.6,2.14,36,0.24,"PDT057",9562555,43,"Elrod-Erickson, M., Benson, T.E., Pabo, C.O.","Structure",6,451,1998,"High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition."]
["1A1I","1A1I","y",1.6,1.58,84,0.19,"PDT059",9562555,43,"Elrod-Erickson, M., Benson, T.E., Pabo, C.O.","Structure",6,451,1998,"High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition."]
["1A1L","1A1I","n",2.2999999999999998,2.0299999999999998,89,0.2,"PDT061",9562555,43,"Elrod-Erickson, M., Benson, T.E., Pabo, C.O.","Structure",6,451,1998,"High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition."]
["1JK1","1A1I","y",1.9,2.13,57,0.21,"PD0230",11800559,46,"Miller, J.C., Pabo, C.O.","J.Mol.Biol.",313,309,2001,"Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition."]
["1G2D","1G2D","y",2.2000000000000002,2.4900000000000002,52,0.23,"PD0186",11587646,69,"Wolfe, S.A., Grant, R.A., Elrod-Erickson, M., Pabo, C.O.","Structure",9,717,2001,"Beyond the 'recognition code': structures of two Cys2His2 zinc finger/TATA box complexes."]
["1G2F","1G2D","n",2,2.76,18,0.23,"PD0187",11587646,69,"Wolfe, S.A., Grant, R.A., Elrod-Erickson, M., Pabo, C.O.","Structure",9,717,2001,"Beyond the 'recognition code': structures of two Cys2His2 zinc finger/TATA box complexes."]
["1BDH","1BDH","y",2.7,3.77,10,0.17,"PDR028",-1,null,"Glasfeld, A., Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.","J.Am.Chem.Soc.",118,13073,1996,"A Positively Charged Residue Bound in the Minor Groove Does not Alter the Bending of a DNA Duplex"]
["1BDI","1BDH","n",3,4.0599999999999996,9,0.16,"PDR029",-1,null,"Glasfeld, A., Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.","J.Am.Chem.Soc.",118,13073,1996,"A Positively Charged Residue Bound in the Minor Groove Does not Alter the Bending of a DNA Duplex"]
["1JFS","1BDH","n",2.9,3.89,12,0.16,"PD0223",11781089,69,"Huffman, J.L., Lu, F., Zalkin, H., Brennan, R.G.","Biochemistry",41,511,2002,"Role of residue 147 in the gene regulatory function of the Escherichia coli purine repressor."]
["1JFT","1BDH","y",2.5,3.61,8,0.19,"PD0224",11781089,69,"Huffman, J.L., Lu, F., Zalkin, H., Brennan, R.G.","Biochemistry",41,511,2002,"Role of residue 147 in the gene regulatory function of the Escherichia coli purine repressor."]
["1JH9","1BDH","n",2.6,4.05,3,0.22,"PD0226",11781089,67,"Huffman, J.L., Lu, F., Zalkin, H., Brennan, R.G.","Biochemistry",41,511,2002,"Role of residue 147 in the gene regulatory function of the Escherichia coli purine repressor."]
["1VPW","1BDH","n",2.7,3.9,7,0.17,"PDT063",9628480,null,"Arvidson, D.N., Lu, F., Faber, C., Zalkin, H., Brennan, R.G.","Nat.Struct.Biol.",5,436,1998,"The structure of PurR mutant L54M shows an alternative route to DNA kinking."]
["2PUA","1BDH","n",2.9,3.95,10,0.17,"PDR040",7973627,null,"Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.","Science",266,763,1994,"Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices."]
["1FJX","1FJX","y",2.2999999999999998,3.04,21,0.21,"PD0194",11102456,63,"Vilkaitis, G., Dong, A., Weinhold, E., Cheng, X., Klimasauskas, S.","J.Biol.Chem.",275,38722,2000,"Functional roles of the conserved threonine 250 in the target recognition domain of HhaI DNA methyltransferase."]
["2I9K","1FJX","n",2.7,3.01,49,0.28999999999999998,"PD0862",16919299,62,"Youngblood, B., Shieh, F.K., De Los Rios, S., Perona, J.J., Reich, N.O.","J.Mol.Biol.",362,334,2006,"Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaI"]
["2UYC","2UYC","y",2,1.89,81,0.2,"2UYC",null,58,"Daujotyte, D., Grazulis, S.","TBP",null,null,null,"HhaI DNA Methyltransferase R163N Mutant Complex with 13mer Gcgc-Gmgc Oligonucleotide and Sah"]
["2UYH","2UYC","n",2.6,2.84,60,0.2,"2UYH",null,54,"Daujotyte, D., Grazulis, S.","TBP",null,null,null,"HhaI DNA Methyltransferase S87Q-Q237S Mutant Complex with 13mer Gcgc-Gmgc Oligonucleotide and Sah"]
["2UZ4","2UYC","n",2.1,2.16,69,0.21,"2UZ4",null,62,"Daujotyte, D., Leinartaite, L., Grazulis, S.","TBP",null,null,null,"DNA Methyltransferase R165N Mutant"]
["2Z6A","2ZCJ","n",2.9,3.4,38,0.24,"PD1023",17616174,64,"Youngblood, B., Shieh, F.K., Buller, F., Bullock, T., Reich, N.O.","Biochemistry",46,8766,2007,"S-Adenosyl-l-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine Methylation"]
["2Z6U","2ZCJ","n",2.7,3.07,50,0.21,"PD1025",17897676,63,"Shieh, F.K., Reich, N.O.","J.Mol.Biol.",373,1157,2007,"AdoMet-dependent Methyl-transfer: Glu(119) Is Essential for DNA C5-Cytosine Methyltransferase M.HhaI"]
["2ZCJ","2ZCJ","y",2.8,2.91,65,0.22,"PD1048",17897676,63,"Shieh, F.K., Reich, N.O.","J.Mol.Biol.",373,1157,2007,"AdoMet-dependent Methyl-transfer: Glu(119) Is Essential for DNA C5-Cytosine Methyltransferase M.HhaI"]
["2Z6Q","2ZCJ","n",2.8,3.24,46,0.21,"PD1024",16926025,59,"Shieh, F.K., Youngblood, B., Reich, N.O.","J.Mol.Biol.",362,516,2006,"The role of Arg165 towards base flipping, base stabilization and catalysis in M.HhaI"]
["1IG9","3CFP","n",2.6,3.11,39,0.2,"PD0212",11389835,54,"Franklin, M.C., Wang, J., Steitz, T.A.","Cell",105,657,2001,"Structure of the Replicating Complex of a Pol Alpha Family DNA Polymerase"]
["3CFP","3CFP","y",2.5,2.73,59,0.2,"PD1105",null,53,"Klimenko, D., Wang, M., Steitz, T.A., Konigsberg, W.H., Wang, J.","TBP",null,null,null,"Insights into base selectivity from the structures  of an RB69 DNA Polymerase triple mutant"]
["3CQ8","3CFP","n",2.5,2.93,43,0.21,"PD1111",18503083,53,"Zhong, X., Pedersen, L.C., Kunkel, T.A.","NAR",36,3892,2008,"Characterization of a replicative DNA polymerase mutant with reduced fidelity and increased translesion synthesis capacity."]
["3L8B","3CFP","y",2.2000000000000002,2.1800000000000002,71,0.22,"NA0449",20166752,56,"Aller, P., Ye, Y., Wallace, S.S., J Burrows, C., Doublie, S.","Biochemistry",null,null,2010,"Crystal Structure of a Replicative DNA Polymerase Bound to the Oxidized Guanine Lesion Guanidinohydantoin ."]
["2DTU","3CFP","y",2.4,2.9,36,0.22,"PD0837",17098747,58,"Hogg, M., Aller, P., Konigsberg, W., Wallace, S.S., Doublie, S.","J.Biol.Chem.",282,1432,2007,"Structural and biochemical investigation of the role in proofreading of a beta hairpin loop found in the exonuclease domain of a replicative DNA polymerase of the B family."]
["1CLQ","3CFP","n",2.7,3.31,31,0.23,"PD0079",10535734,70,"Shamoo, Y., Steitz, T.A.","Cell",99,155,1999,"Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex."]
["1T9I","1T9I","y",1.6,1.91,57,0.19,"PD0547",15518550,51,"Chevalier, B., Sussman, D., Otis, C., Noel, A.J., Turmel, M., Lemieux, C., Stephens, K., Monnat Jr., R.J., Stoddard, B.L.","Biochemistry",43,14015,2004,"Metal-Dependent DNA Cleavage Mechanism of the I-CreI LAGLIDADG Homing Endonuclease."]
["1T9J","1T9I","y",2,2.41,41,0.24,"PD0548",15518550,50,"Chevalier, B., Sussman, D., Otis, C., Noel, A.J., Turmel, M., Lemieux, C., Stephens, K., Monnat Jr., R.J., Stoddard, B.L.","Biochemistry",43,14015,2004,"Metal-Dependent DNA Cleavage Mechanism of the I-CreI LAGLIDADG Homing Endonuclease."]
["1U0C","1T9I","n",2.5,3.11,30,0.22,"PD0561",15313605,null,"Sussman, D., Chadsey, M., Fauce, S., Engel, A., Bruett, A., Monnat, R., Stoddard, B.L., Seligman, L.M.","J.Mol.Biol.",342,31,2004,"Isolation and characterization of new homing endonuclease specificities at individual target site positions."]
["1U0D","1T9I","n",2.9,3.77,18,0.24,"PD0562",15313605,null,"Sussman, D., Chadsey, M., Fauce, S., Engel, A., Bruett, A., Monnat, R., Stoddard, B.L., Seligman, L.M.","J.Mol.Biol.",342,31,2004,"Isolation and characterization of new homing endonuclease specificities at individual target site positions."]
["2I3P","1T9I","n",2.2999999999999998,3.04,22,0.23,"PD0853",16971456,51,"Rosen, L.E., Morrison, H.A., Masri, S., Brown, M.J., Springstubb, B., Sussman, D., Stoddard, B.L., Seligman, L.M.","NAR",34,4791,2006,"Homing endonuclease I-CreI derivatives with novel DNA target specificities."]
["2I3Q","1T9I","n",2.2999999999999998,2.76,40,0.22,"PD0854",16971456,52,"Rosen, L.E., Morrison, H.A., Masri, S., Brown, M.J., Springstubb, B., Sussman, D., Stoddard, B.L., Seligman, L.M.","NAR",34,4791,2006,"Homing endonuclease I-CreI derivatives with novel DNA target specificities."]
["1N3E","2VBL","n",2.5,3.12,29,0.22,"PD0360",12758074,49,"Chevalier, B., Turmel, M., Lemieux, C., Monnat, R.J., Stoddard, B.L.","J.Mol.Biol.",329,253,2003,"Flexible DNA Target Site Recognition by Divergent Homing Endonuclease Isoschizomers I-CreI and I-MsoI"]
["2VBL","2VBL","y",1.8,2.73,12,0.15,"2VBL",null,61,"Redondo, P., Prieto, J., Munoz, I.G., Alibes, A., Stricher, F., Serrano, L., Cabaniols, J.P., Daboussi, F., Arnould, S., Perez, C., Duchateau, P., Paques, F., Blanco, F.J., Montoya, G.","Nature",456,107,2008,"Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases"]
["2VBN","2VBL","n",1.9,2.82,11,0.15,"2VBN",null,45,"Redondo, P., Prieto, J., Munoz, I.G., Alibes, A., Stricher, F., Serrano, L., Cabaniols, J.P., Daboussi, F., Arnould, S., Perez, C., Duchateau, P., Paques, F., Blanco, F.J., Montoya, G.","Nature",456,107,2008,"Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases"]
["+++++histone+++++"]
["1AOI","1AOI","y",2.8,3.03,62,0.22,"PD0001",9305837,57,"Luger, K., Mader, A.W., Richmond, R.K., Sargent, D.F., Richmond, T.J.","Nature",389,251,1997,"Crystal structure of the nucleosome core particle at 2.8 A resolution."]
["1EQZ","1AOI","n",2.5,3.3,19,0.22,"PD0137",11092917,53,"Harp, J.M., Hanson, B.L., Timm, D.E., Bunick, G.J.","Acta Cr. D",56,1513,2000,"Asymmetries in the nucleosome core particle at 2.5 A resolution."]
["1F66","1AOI","n",2.6,2.83,60,0.19,"PD0171",11101893,null,"Suto, R.K., Clarkson, M.J., Tremethick, D.J., Luger, K.","Nat.Struct.Biol.",7,1121,2000,"Crystal structure of a nucleosome core particle containing the variant histone H2A.Z."]
["1ID3","1AOI","n",3.1,3.53,44,0.22,"PD0209",11566884,56,"White, C.L., Suto, R.K., Luger, K.","EMBO J.",20,5207,2001,"Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions."]
["1KX3","1AOI","y",2,2.2799999999999998,52,0.24,"PD0285",12079350,53,"Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.","J.Mol.Biol.",319,1097,2002,"Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 A Resolution"]
["1KX4","1AOI","n",2.6,2.71,69,0.25,"PD0286",12079350,51,"Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.","J.Mol.Biol.",319,1097,2002,"Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 A Resolution"]
["1KX5","1AOI","y",1.9,3.04,6,0.21,"PD0287",12079350,53,"Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.","J.Mol.Biol.",319,1097,2002,"Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 A Resolution"]
["1M18","1AOI","n",2.5,2.4500000000000002,75,0.22,"PD0328",12559907,54,"Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.","J.Mol.Biol.",326,371,2003,"Crystal Structures of Nucleosome Core Particles in Complex with Minor Groove DNA-binding Ligands"]
["1M19","1AOI","n",2.2999999999999998,2.66,48,0.21,"PD0329",12559907,54,"Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.","J.Mol.Biol.",326,371,2003,"Crystal Structures of Nucleosome Core Particles in Complex with Minor Groove DNA-binding Ligands"]
["1M1A","1AOI","n",2.7,2.88,59,0.22,"PD0330",12559907,52,"Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.","J.MOL.BIOL.",326,371,2003,"Crystal Structures of Nucleosome Core Particles in Complex with Minor Groove DNA-binding Ligands"]
["1P34","1AOI","n",2.7,2.5299999999999998,85,0.22,"PD0413",14739929,53,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1P3A","1AOI","n",3,2.92,79,0.2,"PD0414",14739929,52,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1P3B","1AOI","n",3,3.04,72,0.22,"PD0415",14739929,53,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1P3F","1AOI","n",2.9,3.12,61,0.21,"PD0416",14739929,53,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1P3G","1AOI","n",2.7,2.67,78,0.22,"PD0417",14739929,53,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1P3I","1AOI","y",2.2999999999999998,2.1800000000000002,82,0.24,"PD0418",14739929,53,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1P3K","1AOI","n",2.9,2.92,75,0.21,"PD0419",14739929,52,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1P3L","1AOI","n",2.4,2.4700000000000002,70,0.24,"PD0420",14739929,53,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1P3M","1AOI","n",2.9,2.92,75,0.21,"PD0421",14739929,53,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1P3O","1AOI","n",2.8,2.5099999999999998,87,0.22,"PD0422",14739929,53,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1P3P","1AOI","n",2.7,2.64,79,0.22,"PD0423",14739929,53,"Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.","EMBO J.",23,260,2004,"Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions"]
["1S32","1AOI","y",2.1,2.56,34,0.22,"PD0514",15100411,59,"Edayathumangalam, R.S., Weyermann, P., Gottesfeld, J.M., Dervan, P.B., Luger, K.","PNAS",101,6864,2004,"Molecular Recognition of the Nucleosomal 'Supergroove'"]
["1U35","1AOI","n",3,3.1,69,0.21,"PD0566",16107708,52,"Chakravarthy, S., Gundimella, S.K., Caron, C., Perche, P.Y., Pehrson, J.R., Khochbin, S., Luger, K.","Mol.Cell.Biol.",25,7616,2005,"Structural characterization of the histone variant macroH2A."]
["1ZLA","1AOI","n",2.9,3.06,66,0.22,"PD0668",16469929,52,"Barbera, A.J., Chodaparambil, J.V., Kelley-Clarke, B., Joukov, V., Walter, J.C., Luger, K., Kaye, K.M.","Science",311,856,2006,"The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA."]
["2CV5","1AOI","n",2.5,2.71,60,0.22,"PD0676",15951514,null,"Tsunaka, Y., Kajimura, N., Tate, S., Morikawa, K.","NAR",33,3424,2005,"Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle"]
["2F8N","1AOI","n",2.9,3.1,63,0.22,"PD0764",null,51,"Chakravarthy, S., Luger, K.","TBP",null,null,null,"Nucleosomes containing the histone domain of macroH2A: In vitro possibilities."]
["2FJ7","1AOI","n",3.2,4.08,15,0.28000000000000003,"PD0755",16860337,51,"Bao, Y., White, C.L., Luger, K.","J.Mol.Biol.",361,617,2006,"Nucleosome Core Particles Containing a Poly(dA.dT) Sequence Element Exhibit a Locally Distorted DNA Structure."]
["2NQB","1AOI","n",2.2999999999999998,2.27,77,0.22,"PD0914",null,53,"Chakravarthy, S., Luger, K.","TBP",null,null,null,"Comparative analysis of nucleosome structures from different species."]
["2PYO","1AOI","y",2.4,1.94,95,0.23,"PD1003",17957772,53,"Clapier, C.R., Chakravarthy, S., Petosa, C., Fernandez-Tornero, C., Luger, K., Muller, C.W.","Proteins",71,1,2007,"Structure of the Drosophila nucleosome core particle highlights evolutionary constraints on the H2A-H2B histone dimer."]
["3C1B","1AOI","n",2.2000000000000002,2.4500000000000002,55,0.24,"PD1077","18794842",53,"Lu, X., Simon, M.D., Chodaparambil, J.V., Hansen, J.C., Shokat, K.M., Luger, K.","Nature SMB",15,1122,2008,"The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure."]
["3C1C","1AOI","n",3.2,3.33,60,0.22,"PD1078",18794842,55,"Lu, X., Simon, M.D., Chodaparambil, J.V., Hansen, J.C., Shokat, K.M., Luger, K.","Nature SMB",15,1122,2008,"The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure."]
["+++++histone+++++++++++++++weaker similarities++++++++++"]
["1A1G","1A1G","y",1.9,2.81,12,0.22,"PDT056",9562555,43,"Elrod-Erickson, M., Benson, T.E., Pabo, C.O.","Structure",6,451,1998,"High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition."]
["1A1J","1A1J","y",2,1.56,95,0.21,"PDT060",9562555,43,"Elrod-Erickson, M., Benson, T.E., Pabo, C.O.","Structure",6,451,1998,"High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition."]
["1A1K","1A1K","y",1.9,2.2200000000000002,49,0.21,"PDT058",9562555,43,"Elrod-Erickson, M., Benson, T.E., Pabo, C.O.","Structure",6,451,1998,"High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition."]
["2E52","2E52","y",2,1.97,75,0.18,"PD0956",null,58,"Watanabe, N., Takasaki, Y., Sato, C., Ando, S., Tanaka, I.","TBP",null,null,null,"Crystal structures of restriction endonuclease HindIII complex with its cognate DNA and divalent cations"]
["1A02","1A02","y",2.7,3.31,31,0.25,"PDT050",9510247,68,"Chen, L., Glover, J.N., Hogan, P.G., Rao, A., Harrison, S.C.","Nature",392,42,1998,"Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA."]
["1A0A","1A0A","y",2.8,4.8600000000000003,0,0.23,"PDT046",9303313,71,"Shimizu, T., Toumoto, A., Ihara, K., Shimizu, M., Kyogoku, Y., Ogawa, N., Oshima, Y., Hakoshima, T.","EMBO J.",16,4689,1997,"Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition."]
["1A1V","1A1V","y",2.2000000000000002,2.15,77,0.23,"PDE0134",9493270,55,"Kim, J.L., Morgenstern, K.A., Griffith, J.P., Dwyer, M.D., Thomson, J.A., Murcko, M.A., Lin, C., Caron, P.R.","Structure",6,89,1998,"Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding."]
["1A31","1A31","y",2.1,2.81,21,0.25,"PDE0142",9488644,39,"Redinbo, M.R., Stewart, L., Kuhn, P., Champoux, J.J., Hol, W.G.","Science",279,1504,1998,"Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA."]
["1A35","1A35","y",2.5,2.85,49,0.21,"PDE0143",9488644,39,"Redinbo, M.R., Stewart, L., Kuhn, P., Champoux, J.J., Hol, W.G.","Science",279,1504,1998,"Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA."]
["1A36","1A36","y",2.8,3.17,51,0.22,"PDE0141",9488652,null,"Stewart, L., Redinbo, M.R., Qiu, X., Hol, W.G., Champoux, J.J.","Science",279,1534,1998,"A model for the mechanism of human topoisomerase I."]
["1A74","1A74","y",2.2000000000000002,2.94,20,0.22,"PDE140",9665136,60,"Flick, K.E., Jurica, M.S., Monnat Jr., R.J., Stoddard, B.L.","Nature",394,96,1998,"DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI."]
["1AAY","1AAY","y",1.6,1.58,84,0.2,"PDT039",8939742,55,"Elrod-Erickson, M., Rould, M.A., Nekludova, L., Pabo, C.O.","Structure",4,1171,1996,"Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions."]
["1AIS","1AIS","y",2.1,3.07,10,0.21,"PDR031",9177165,64,"Kosa, P.F., Ghosh, G., DeDecker, B.S., Sigler, P.B.","PNAS",94,6042,1997,"The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box."]
["1AKH","1AKH","y",2.5,3.49,11,0.2,"PDR049",9838003,68,"Li, T., Jin, Y., Vershon, A.K., Wolberger, C.","NAR",26,5707,1998,"Crystal structure of the MATa1/MATalpha2 homeodomain heterodimer in complex with DNA containing an A-tract."]
["1AM9","1AM9","y",2.2999999999999998,2.4300000000000002,66,0.22,"PDT062",9634703,74,"Parraga, A., Bellsolell, L., Ferre-D'Amare, A.R., Burley, S.K.","Structure",6,661,1998,"Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution."]
["1AN2","1AN2","y",2.9,4.3499999999999996,2,0.23,"PDT023",8479534,61,"Ferre-D'Amare, A.R., Prendergast, G.C., Ziff, E.B., Burley, S.K.","Nature",363,38,1993,"Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain."]
["1AN4","1AN4","y",2.9,4.82,0,0.24,"PDT027",8306960,57,"Ferre-D'Amare, A.R., Pognonec, P., Roeder, R.G., Burley, S.K.","EMBO J.",13,180,1994,"Structure and function of the b/HLH/Z domain of USF."]
["1APL","1APL","y",2.7,3.66,13,0.23,"PDT005",1682054,51,"Wolberger, C., Vershon, A.K., Liu, B., Johnson, A.D., Pabo, C.O.","Cell",67,517,1991,"Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions."]
["1AU7","1AU7","y",2.2999999999999998,3.07,20,0.23,"PDR034",9009203,33,"Jacobson, E.M., Li, P., Leon-del-Rio, A., Rosenfeld, M.G., Aggarwal, A.K.","Genes Dev.",11,198,1997,"Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility."]
["1AWC","1AWC","y",2.2000000000000002,2.56,41,0.21,"PDT048",9461436,49,"Batchelor, A.H., Piper, D.E., de la Brousse, F.C., McKnight, S.L., Wolberger, C.","Science",279,1037,1998,"The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA."]
["1AZQ","1AZQ","y",1.9,2.92,9,0.19,"PDR048",9515968,59,"Robinson, H., Gao, Y.G., McCrary, B.S., Edmondson, S.P., Shriver, J.W., Wang, A.H.","Nature",392,202,1998,"The hyperthermophile chromosomal protein Sac7d sharply kinks DNA."]
["1B01","1B01","y",2.6,3.65,10,0.25,"PD0091",9857196,45,"Gomis-Ruth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., Coll, M.","EMBO J.",17,7404,1998,"The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator."]
["1B3T","1B3T","y",2.2000000000000002,2.3199999999999998,65,0.21,"PD0024",9878348,null,"Bochkarev, A., Bochkareva, E., Frappier, L., Edwards, A.M.","J.Mol.Biol.",284,1273,1998,"The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1."]
["1B72","1B72","y",2.4,2.06,89,0.24,"PD0075",10052460,47,"Piper, D.E., Batchelor, A.H., Chang, C.P., Cleary, M.L., Wolberger, C.","Cell",96,587,1999,"Structure of a HoxB1-Pbx1 heterodimer bound to DNA: role of the hexapeptide and a fourth homeodomain helix in complex formation."]
["1B8I","1B8I","y",2.4,3.8,3,0.22,"PD0042",10067897,40,"Passner, J.M., Ryoo, H.D., Shen, L., Mann, R.S., Aggarwal, A.K.","Nature",397,714,1999,"Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex."]
["1B94","1B94","y",1.9,2.5499999999999998,24,0.21,"PD0037",10446231,null,"Thomas, M.P., Brady, R.L., Halford, S.E., Sessions, R.B., Baldwin, G.S.","NAR",27,3438,1999,"Structural analysis of a mutational hot-spot in the EcoRV restriction endonuclease: a catalytic role for a main chain carbonyl group."]
["1B95","1B95","y",2.1,2.42,44,0.21,"PD0038",10446231,null,"Thomas, M.P., Brady, R.L., Halford, S.E., Sessions, R.B., Baldwin, G.S.","NAR",27,3438,1999,"Structural analysis of a mutational hot-spot in the EcoRV restriction endonuclease: a catalytic role for a main chain carbonyl group."]
["1BC7","1BC7","y",2,2.95,11,0.22,"PD0027",9734357,45,"Mo, Y., Vaessen, B., Johnston, K., Marmorstein, R.","Mol.Cell",2,201,1998,"Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: insights into DNA sequence discrimination by Ets proteins."]
["1BC8","1BC8","y",1.9,3,7,0.22,"PD0020",9734357,42,"Mo, Y., Vaessen, B., Johnston, K., Marmorstein, R.","Mol.Cell",2,201,1998,"Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: insights into DNA sequence discrimination by Ets proteins."]
["1BDV","1BDV","y",2.8,2.91,71,0.24,"PD0025",9927650,null,"Schildbach, J.F., Karzai, A.W., Raumann, B.E., Sauer, R.T.","PNAS",96,811,1999,"Origins of DNA-binding specificity: role of protein contacts with the DNA backbone."]
["1BF4","1BF4","y",1.6,2.54,12,0.21,"PD0088",9731772,39,"Gao, Y.G., Su, S.Y., Robinson, H., Padmanabhan, S., Lim, L., McCrary, B.S., Edmondson, S.P., Shriver, J.W., Wang, A.H.","Nat.Struct.Biol.",5,782,1998,"The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA."]
["1BF5","1BF5","y",2.9,3.6,26,0.23,"PDR052",9630226,null,"Chen, X., Vinkemeier, U., Zhao, Y., Jeruzalmi, D., Darnell Jr., J.E., Kuriyan, J.","Cell",93,827,1998,"Crystal structure of a tyrosine phosphorylated STAT-1 dimer bound to DNA."]
["1BG1","1BG1","y",2.2999999999999998,3.29,10,0.25,"PD0028",9671298,70,"Becker, S., Groner, B., Muller, C.W.","Nature",394,145,1998,"Three-dimensional structure of the Stat3beta homodimer bound to DNA."]
["1BGB","1BGB","y",2,2.85,14,0.18,"PD0010",9705308,null,"Horton, N.C., Perona, J.J.","J.Biol.Chem.",273,21721,1998,"Recognition of flanking DNA sequences by EcoRV endonuclease involves alternative patterns of water-mediated contacts."]
["1BL0","1BL0","y",2.2999999999999998,4.05,1,0.23,"PDR056",9724717,56,"Rhee, S., Martin, R.G., Rosner, J.L., Davies, D.R.","PNAS",95,10413,1998,"A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator."]
["1BNZ","1BNZ","y",2,2.72,20,0.17,"PD0012",9731772,42,"Gao, Y.G., Su, S.Y., Robinson, H., Padmanabhan, S., Lim, L., McCrary, B.S., Edmondson, S.P., Shriver, J.W., Wang, A.H.","Nat.Struct.Biol.",5,782,1998,"The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA."]
["1BP7","1BP7","y",3,3.66,27,0.23,"PD0026",9809068,48,"Jurica, M.S., Monnat Jr., R.J., Stoddard, B.L.","Mol.Cell",2,469,1998,"DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI."]
["1BVO","1BVO","y",2.7,3.42,24,0.22,"1BVO",10425685,50,"Cramer, P., Varrot, A., Barillas-Mury, C., Kafatos, F.C., Muller, C.W.","Structure Fold.Des.",7,841,1999,"Structure of the specificity domain of the Dorsal homologue Gambif1 bound to DNA."]
["1C0W","1C0W","y",3.2,3.72,35,0.25,"PD0069",10497029,null,"Pohl, E., Holmes, R.K., Hol, W.G.","J.Mol.Biol.",292,653,1999,"Crystal structure of a cobalt-activated diphtheria toxin repressor-DNA complex reveals a metal-binding SH3-like domain."]
["1C7Y","1C7Y","y",3.1,3.5,46,0.25,"PD0136",10890893,null,"Ariyoshi, M., Nishino, T., Iwasaki, H., Shinagawa, H., Morikawa, K.","PNAS",97,8257,2000,"Crystal structure of the holliday junction DNA in complex with a single RuvA tetramer."]
["1C8C","1C8C","y",1.5,3.37,0,0.23,"PD0143",11031116,39,"Su, S., Gao, Y.G., Robinson, H., Liaw, Y.C., Edmondson, S.P., Shriver, J.W., Wang, A.H.","J.Mol.Biol.",303,395,2000,"Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs."]
["1C9B","1C9B","y",2.7,3.42,22,0.23,"PD0112",10619841,null,"Tsai, F.T., Sigler, P.B.","EMBO J.",19,25,2000,"Structural basis of preinitiation complex assembly on human pol II promoters."]
["1CA5","1CA5","y",2.2000000000000002,3.93,1,0.19,"PD0119",11031116,53,"Su, S., Gao, Y.-G., Robinson, H., Liaw, Y.C., Edmondson, S.P., Shriver, J.W., Wang, A.H.-J.","J.Mol.Biol.",303,395,2000,"Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs"]
["1CA6","1CA6","y",2.2000000000000002,2.97,19,0.2,"PD0120",11031116,53,"Su, S., Gao, Y.-G., Robinson, H., Liaw, Y.C., Edmondson, S.P., Shriver, J.W., Wang, A.H.-J.","J.Mol.Biol.",303,395,2000,"Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs"]
["1CDW","1CDW","y",1.9,2.4700000000000002,29,0.19,"PDT034",8643494,null,"Nikolov, D.B., Chen, H., Halay, E.D., Hoffman, A., Roeder, R.G., Burley, S.K.","PNAS",93,4862,1996,"Crystal structure of a human TATA box-binding protein/TATA element complex."]
["1CEZ","1CEZ","y",2.4,3.24,17,0.22,"PD0086",10331394,58,"Cheetham, G.M., Jeruzalmi, D., Steitz, T.A.","Nature",399,80,1999,"Structural basis for initiation of transcription from an RNA polymerase-promoter complex."]
["1CF7","1CF7","y",2.6,3.61,11,0.22,"PD0045",10090723,67,"Zheng, N., Fraenkel, E., Pabo, C.O., Pavletich, N.P.","Genes Dev.",13,666,1999,"Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP."]
["1CIT","1CIT","y",2.7,3.27,34,0.22,"PD0046",10331876,53,"Meinke, G., Sigler, P.B.","Nat.Struct.Biol.",6,471,1999,"DNA-binding mechanism of the monomeric orphan nuclear receptor NGFI-B."]
["1CKQ","1CKQ","y",1.9,2.44,30,0.24,"PD0049",null,58,"Horvath, M., Choi, J., Kim, Y., Wilkosz, P.A., Chandrasekhar, K., Rosenberg, J.M.","TBP",null,null,null,"The Integration of Recognition and Cleavage: X-Ray Structures of Pre- Transition State and Post-Reactive DNA-Eco Ri Endonuclease Complexes"]
["1CKT","1CKT","y",2.5,3.17,26,0.24,"PD0051",10385126,69,"Ohndorf, U.M., Rould, M.A., He, Q., Pabo, C.O., Lippard, S.J.","Nature",399,708,1999,"Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins."]
["1CL8","1CL8","y",1.8,2.4,31,0.24,"PD0054",null,58,"Horvath, M., Rosenberg, J.M.","TBP",null,null,null,"Iap (Inner-Adenine to Purine): A Cognate EcoRI-DNA Base Analog Complex"]
["1CQT","1CQT","y",3.2,3.51,50,0.26,"PD0092",10541551,null,"Chasman, D., Cepek, K., Sharp, P.A., Pabo, C.O.","Genes Dev.",13,2650,1999,"Crystal structure of an OCA-B peptide bound to an Oct-1 POU domain/octamer DNA complex: specific recognition of a protein-DNA interface."]
["1CW0","1CW0","y",2.2999999999999998,2.46,64,0.2,"PD0100",10612397,null,"Tsutakawa, S.E., Jingami, H., Morikawa, K.","Cell",99,615,1999,"Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex."]
["1D02","1D02","y",1.7,1.6,86,0.18,"PD0151",10545092,49,"Deibert, M., Grazulis, S., Janulaitis, A., Siksnys, V., Huber, R.","EMBO J.",18,5805,1999,"Crystal structure of MunI restriction endonuclease in complex with cognate DNA at 1.7 A resolution."]
["1D0E","1D0E","y",3,3.87,16,0.22,"PD0135",10669612,46,"Najmudin, S., Cote, M.L., Sun, D., Yohannan, S., Montano, S.P., Gu, J., Georgiadis, M.M.","J.Mol.Biol.",296,613,2000,"Crystal structures of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed with nucleic acid: functional implications for template-primer binding to the fingers domain"]
["1D1U","1D1U","y",2.2999999999999998,2.9,30,0.23,"PD0152",10957631,55,"Cote, M.L., Yohannan, S.J., Georgiadis, M.M.","Acta Cr. D",56,1120,2000,"Use of an N-terminal fragment from moloney murine leukemia virus reverse transcriptase to facilitate crystallization and analysis of a pseudo-16-mer DNA molecule containing G-A mispairs."]
["1D3U","1D3U","y",2.4,2.72,51,0.21,"PD0070",10570130,null,"Littlefield, O., Korkhin, Y., Sigler, P.B.","PNAS",96,13668,1999,"The structural basis for the oriented assembly of a TBP/TFB/promoter complex."]
["1D5Y","1D5Y","y",2.7,3.37,27,0.25,"PD0078",10802742,63,"Kwon, H.J., Bennik, M.H., Demple, B., Ellenberger, T.","Nat.Struct.Biol.",7,424,2000,"Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA."]
["1D66","1D66","y",2.7,3.44,23,0.23,"PDT003",1557122,43,"Marmorstein, R., Carey, M., Ptashne, M., Harrison, S.C.","Nature",356,408,1992,"DNA recognition by GAL4: structure of a protein-DNA complex."]
["1D8Y","1D8Y","y",2.1,3.02,12,0.22,"PD0072",10588690,59,"Teplova, M., Wallace, S.T., Tereshko, V., Minasov, G., Symons, A.M., Cook, P.D., Manoharan, M., Egli, M.","PNAS",96,14240,1999,"Structural origins of the exonuclease resistance of a zwitterionic RNA."]
["1DC1","1DC1","y",1.7,2.44,21,0.19,"PD0085",11250198,41,"van der Woerd, M.J., Pelletier, J.J., Xu, S., Friedman, A.M.","Structure",9,133,2001,"Restriction enzyme BsoBI-DNA complex: a tunnel for recognition of degenerate DNA sequences and potential histidine catalysis."]
["1DCT","1DCT","y",2.8,3.35,36,0.23,"PDEB19",7606780,45,"Reinisch, K.M., Chen, L., Verdine, G.L., Lipscomb, W.N.","Cell",82,143,1995,"The crystal structure of HaeIII methyltransferase convalently complexed to DNA: an extrahelical cytosine and rearranged base pairing."]
["1DDN","1DDN","y",3,3.67,27,0.24,"PD0004",9697776,70,"White, A., Ding, X., vanderSpek, J.C., Murphy, J.R., Ringe, D.","Nature",394,502,1998,"Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex."]
["1DE8","1DE8","y",3,3.42,40,0.19,"PD0093",10667800,54,"Mol, C.D., Izumi, T., Mitra, S., Tainer, J.A.","Nature",403,451,2000,"DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected"]
["1DE9","1DE9","y",3,3,75,0.18,"PD0094",10667800,60,"Mol, C.D., Izumi, T., Mitra, S., Tainer, J.A.","Nature",403,451,2000,"DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination"]
["1DEW","1DEW","y",2.7,2.74,69,0.2,"PD0095",10667800,58,"Mol, C.D., Izumi, T., Mitra, S., Tainer, J.A.","Nature",403,451,2000,"DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination"]
["1DGC","1DGC","y",3,2.93,79,0.22,"PDT007",8377181,56,"Konig, P., Richmond, T.J.","J.Mol.Biol.",233,139,1993,"The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility."]
["1DH3","1DH3","y",3,4.6399999999999997,1,0.22,"PD0102",10952992,64,"Schumacher, M.A., Goodman, R.H., Brennan, R.G.","J.Biol.Chem.",275,35242,2000,"The structure of a CREB bZIP.somatostatin CRE complex reveals the basis for selective dimerization and divalent cation-enhanced DNA binding"]
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["1DMU","1DMU","y",2.2000000000000002,2.06,83,0.18,"PD0108",9736624,48,"Newman, M., Lunnen, K., Wilson, G., Greci, J., Schildkraut, I., Phillips, S.E.","EMBO J.",17,5466,1998,"Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence."]
["1DNK","1DNK","y",2.2999999999999998,3.04,22,0.19,"PDE005",1518054,52,"Weston, S.A., Lahm, A., Suck, D.","J.Mol.Biol.",226,1237,1992,"X-ray structure of the DNase I-d(GGTATACC)2 complex at 2.3 A resolution."]
["1DP7","1DP7","y",1.5,1.54,82,0.19,"PD0111",10706293,55,"Gajiwala, K.S., Chen, H., Cornille, F., Roques, B.P., Reith, W., Mach, B., Burley, S.K.","Nature",403,916,2000,"Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding."]
["1DRG","1DRG","y",2.6,3.52,13,0.19,"PD0113",11601846,66,"Woods, K.C., Martin, S.S., Chu, V.C., Baldwin, E.P.","J.Mol.Biol.",313,49,2001,"Quasi-equivalence in site-specific recombinase structure and function: crystal structure and activity of trimeric Cre recombinase bound to a three-way Lox DNA junction"]
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["1DUX","1DUX","y",2.1,2.71,27,0.2,"PD0116",10742173,42,"Mo, Y., Vaessen, B., Johnston, K., Marmorstein, R.","Nat.Struct.Biol.",7,292,2000,"Structure of the elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA."]
["1E3O","1E3O","y",1.9,2.4900000000000002,28,0.22,"1E3O",11583619,54,"Remenyi, A., Tomilin, A., Pohl, E., Lins, K., Philippsen, A., Reinbold, R., Scholer, H.R., Wilmanns, M.","Mol.Cell",8,569,2001,"Differential Dimer Activities of the Transcription Factor Oct-1 by DNA-Induced Interface Swapping"]
["1EA4","1EA4","y",3,3.7,23,0.23,"1EA4",11428897,45,"Costa, M., Sola, M., Del, G., Eritja, R., Hernaindez-Arriaga, A.M., Espinosa, M., Gomis-Rueth, F.X., Coll, M.","J.Mol.Biol.",310,403,2001,"Plasmid Transcriptional Repressor Copg Oligomerises to Render Helical Superstructures Unbound and in Complexes with Oligonucleotides"]
["1EFA","1EFA","y",2.6,3.06,42,0.25,"PD0118",10700279,null,"Bell, C.E., Lewis, M.","Nat.Struct.Biol.",7,209,2000,"A closer view of the conformation of the Lac repressor bound to operator."]
["1EGW","1EGW","y",1.5,1.49,86,0.21,"PD0121",10715212,51,"Santelli, E., Richmond, T.J.","J.Mol.Biol.",297,437,2000,"Crystal structure of MEF2A core bound to DNA at 1.5 A resolution."]
["1EJ9","1EJ9","y",2.6,3.1,40,0.21,"PD0125",10841763,61,"Redinbo, M.R., Champoux, J.J., Hol, W.G.","Biochemistry",39,6832,2000,"Novel insights into catalytic mechanism from a crystal structure of human topoisomerase I in complex with DNA."]
["1EOO","1EOO","y",2.2000000000000002,3.1,13,0.23,"PD0132",10801972,60,"Horton, N.C., Perona, J.J.","PNAS",97,5729,2000,"Crystallographic snapshots along a protein-induced DNA-bending pathway."]
["1EOP","1EOP","y",2.6,3.29,26,0.19,"PD0133",10801972,51,"Horton, N.C., Perona, J.J.","PNAS",97,5729,2000,"Crystallographic snapshots along a protein-induced DNA-bending pathway."]
["1ERI","1ERI","y",2.5,2.93,43,0.17,"PDE001",2399465,58,"Kim, Y.C., Grable, J.C., Love, R., Greene, P.J., Rosenberg, J.M.","Science",249,1307,1990,"Refinement of Eco RI endonuclease crystal structure: a revised protein chain tracing."]
["1ESG","1ESG","y",1.9,2.4500000000000002,31,0.19,"PD0139",10882125,62,"Viadiu, H., Aggarwal, A.K.","Mol.Cell",5,889,2000,"Structure of BamHI bound to nonspecific DNA: a model for DNA sliding."]
["1EYG","1EYG","y",2.8,4.41,1,0.26,"PD0144",10932248,35,"Raghunathan, S., Kozlov, A.G., Lohman, T.M., Waksman, G.","Nat.Struct.Biol.",7,648,2000,"Structure of the DNA binding domain of E. coli SSB bound to ssDNA."]
["1F0O","1F0O","y",2.5,2.44,79,0.28000000000000003,"PD0149",10903853,40,"Horton, J.R., Cheng, X.","J.Mol.Biol.",300,1049,2000,"PvuII endonuclease contains two calcium ions in active sites."]
["1F2I","1F2I","y",2.4,2.97,29,0.22,"PD0165",11427887,66,"Wang, B.S., Grant, R.A., Pabo, C.O.","Nat.Struct.Biol.",8,589,2001,"Selected peptide extension contacts hydrophobic patch on neighboring zinc finger and mediates dimerization on DNA."]
["1F5T","1F5T","y",3,3.31,53,0.25,"PD0170",10956029,null,"Chen, C.S., White, A., Love, J., Murphy, J.R., Ringe, D.","Biochemistry",39,10397,2000,"Methyl groups of thymine bases are important for nucleic acid recognition by DtxR."]
["1FIU","1FIU","y",1.6,2.38,20,0.17,"PD0177",10966652,44,"Deibert, M., Grazulis, S., Sasnauskas, G., Siksnys, V., Huber, R.","Nat.Struct.Biol.",7,792,2000,"Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA."]
["1FJL","1FJL","y",2,2.2999999999999998,50,0.2,"PDE025",7671301,null,"Wilson, D.S., Guenther, B., Desplan, C., Kuriyan, J.","Cell",82,709,1995,"High resolution crystal structure of a paired (Pax) class cooperative homeodomain dimer on DNA."]
["1FLO","1FLO","y",2.7,3.02,49,0.25,"PD0178",11090626,60,"Chen, Y., Narendra, U., Iype, L.E., Cox, M.M., Rice, P.A.","Mol.Cell",6,885,2000,"Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swapping."]
["1FOK","1FOK","y",2.8,3.51,27,0.21,"PDE0127",9214510,62,"Wah, D.A., Hirsch, J.A., Dorner, L.F., Schildkraut, I., Aggarwal, A.K.","Nature",388,97,1997,"Structure of the multimodular endonuclease FokI bound to DNA."]
["1FOS","1FOS","y",3.1,3.11,68,0.23,"PDT014",7816143,65,"Glover, J.N., Harrison, S.C.","Nature",373,257,1995,"Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA."]
["1FW6","1FW6","y",2.7,3.35,28,0.22,"PD0181",11172706,51,"Junop, M.S., Obmolova, G., Rausch, K., Hsieh, P., Yang, W.","Mol.Cell",7,1,2001,"Composite active site of an ABC ATPase: MutS uses ATP to verify mismatch recognition and authorize DNA repair."]
["1FYL","1FYL","y",2.1,2.36,54,0.21,"PD0183",11599025,40,"Littlefield, O., Nelson, H.C.","Proteins",45,219,2001,"Crystal packing interaction that blocks crystallization of a site-specific DNA binding protein-DNA complex."]
["1FYM","1FYM","y",2.2000000000000002,1.87,91,0.21,"PD0184",11599025,41,"Littlefield, O., Nelson, H.C.","Proteins",45,219,2001,"Crystal packing interaction that blocks crystallization of a site-specific DNA binding protein-DNA complex."]
["1FZP","1FZP","y",3,4.74,0,0.22,"PD0185",11196648,54,"Schumacher, M.A., Hurlburt, B.K., Brennan, R.G.","Nature",409,215,2001,"Crystal structures of SarA, a pleiotropic regulator of virulence genes in S. aureus."]
["1G38","1G38","y",2,2.36,45,0.21,"PD0188",11175899,44,"Goedecke, K., Pignot, M., Goody, R.S., Scheidig, A.J., Weinhold, E.","Nat.Struct.Biol.",8,121,2001,"Structure of the N6-adenine DNA methyltransferase M.TaqI in complex with DNA and a cofactor analog."]
["1G9Y","1G9Y","y",2.1,2.98,12,0.21,"PD0189",11276249,52,"Chevalier, B.S., Monnat Jr., R.J., Stoddard, B.L.","Nat.Struct.Biol.",8,312,2001,"The homing endonuclease I-CreI uses three metals, one of which is shared between the two active sites."]
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["1GD2","1GD2","y",2,1.75,89,0.23,"PD0180",11017199,67,"Fujii, Y., Shimizu, T., Toda, T., Yanagida, M., Hakoshima, T.","Nat.Struct.Biol.",7,889,2000,"Structural basis for the diversity of DNA recognition by bZIP transcription factors."]
["1GDT","1GDT","y",3,3.27,56,0.24,"PDE0115",7628011,null,"Yang, W., Steitz, T.A.","Cell",82,193,1995,"Crystal structure of the site-specific recombinase gamma delta resolvase complexed with a 34 bp cleavage site."]
["1GJI","1GJI","y",2.9,3.61,22,0.23,"PD0222",11587641,63,"Huang, D.B., Chen, Y.Q., Ruetsche, M., Phelps, C.B., Ghosh, G.","Structure",9,669,2001,"X-ray crystal structure of proto-oncogene product c-Rel bound to the CD28 response element of IL-2."]
["1GM5","1GM5","y",3.2,4.83,1,0.28000000000000003,"1GM5",11595187,65,"Singleton, M.R., Scaife, S., Wigley, D.B.","Cell",107,79,2001,"Structural Analysis of DNA Replication Fork Reversal by Recg"]
["1GT0","1GT0","y",2.6,3.25,29,0.23,"1GT0",12923055,60,"Remenyi, A., Lins, K., Nissen, L.J., Reinbold, R., Scholer, H.R., Wilmanns, M.","Genes Dev.",17,2048,2003,"Crystal Structure of a POU/Hmg/DNA Ternary Complex Suggests Differential Assembly of Oct4 and Sox2 on Two Enhancers"]
["1GU4","1GU4","y",1.8,1.99,63,0.23,"1GU4",null,66,"Tahirov, T.H., Inoue-Bungo, T., Sato, K., Sasaki, M., Ogata, K.","TBP",null,null,null,"Structural Basis for Flexible Base Recognition by C/Ebpbeta"]
["1GU5","1GU5","y",2.1,2.15,70,0.23,"1GU5",null,66,"Tahirov, T.H., Inoue-Bungo, T., Sato, K., Sasaki, M., Ogata, K.","TBP",null,null,null,"Structural Basis for Flexible Base Recognition by C/Ebpbeta"]
["1GXP","1GXP","y",2.5,3.42,14,0.25,"1GXP",12015152,58,"Blanco, A.G., Sola, M., Gomis-Ruth, F.X., Coll, M.","Structure",10,701,2002,"Tandem DNA Recognition by Two-Component Signal Transduction Transcriptional Activator Phob"]
["1H0M","1H0M","y",3,3.5,38,0.23,"1H0M",12198141,50,"Vannini, A., Volpari, C., Gargioli, C., Muraglia, E., Cortese, R., De Francesco, R., Neddermann, P., Di Marco, S.","EMBO J.",21,4393,2002,"The Crystal Structure of the Quorum Sensing Protein Trar Bound to its Autoinducer and Target DNA"]
["1H6F","1H6F","y",1.7,2.09,47,0.2,"1H6F",12005433,42,"Coll, M., Seidman, J.G., Muller, C.W.","Structure",10,343,2002,"Structure of the DNA-Bound T-Box Domain of Human Tbx3, a Transcription Factor Responsible for Ulnar- Mammary Syndrome"]
["1H88","1H88","y",2.8,3.4,33,0.22,"1H88",11792321,62,"Tahirov, T.H., Sato, K., Ichikawa-Iwata, E., Sasaki, M., Inoue-Bungo, T., Shiina, M., Kimura, K., Takata, S., Fujikawa, A., Morii, H., Kumasaka, T., Yamamoto, M., Ishii, S., Ogata, K.","Cell",108,57,2002,"Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter"]
["1H89","1H89","y",2.5,2.97,36,0.23,"1H89",11792321,66,"Tahirov, T.H., Sato, K., Ichikawa-Iwata, E., Sasaki, M., Inoue-Bungo, T., Shiina, M., Kimura, K., Takata, S., Fujikawa, A., Morii, H., Kumasaka, T., Yamamoto, M., Ishii, S., Ogata, K.","Cell",108,57,2002,"Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter"]
["1H8A","1H8A","y",2.2000000000000002,2.72,34,0.25,"1H8A",11792321,65,"Tahirov, T.H., Sato, K., Ichikawa-Iwata, E., Sasaki, M., Inoue-Bungo, T., Shiina, M., Kimura, K., Takata, S., Fujikawa, A., Morii, H., Kumasaka, T., Yamamoto, M., Ishii, S., Ogata, K.","Cell",108,57,2002,"Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter"]
["1H9D","1H9D","y",2.6,3.09,40,0.24,"1H9D",11276260,57,"Bravo, J., Li, Z., Speck, N.A., Warren, A.J.","Nat.Struct.Biol.",8,371,2001,"The Leukemia-Associated Aml1 (Runx1)-Cbfbeta Complex Functions as a DNA-Induced Molecular Clamp"]
["1H9T","1H9T","y",3.3,4.09,15,0.27,"1H9T",11296236,61,"Van Aalten, D.M.F., Dirusso, C.C., Knudsen, J.","EMBO J.",20,2041,2001,"The Structural Basis of Acyl Coenzyme A-Dependent Regulation of the Transcription Factor Fadr"]
["1HBX","1HBX","y",3.2,3.77,30,0.25,"1HBX",11406578,64,"Hassler, M., Richmond, T.J.","EMBO J.",20,3018,2001,"The B-Box Dominates Sap-1/Srf Interactions in the Structure of the Ternary Complex"]
["1HCQ","1HCQ","y",2.4,3.44,10,0.2,"PDRC03",8221895,null,"Schwabe, J.W., Chapman, L., Finch, J.T., Rhodes, D.","Cell",75,567,1993,"The crystal structure of the estrogen receptor DNA-binding domain bound to DNA: how receptors discriminate between their response elements."]
["1HDD","1HDD","y",2.8,3.88,11,0.23,"PDT004",1977522,63,"Kissinger, C.R., Liu, B.S., Martin-Blanco, E., Kornberg, T.B., Pabo, C.O.","Cell",63,579,1990,"Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions."]
["1HF0","1HF0","y",2.7,3.32,30,0.24,"1HF0",11583619,57,"Remenyi, A., Tomilin, A., Pohl, E., Lins, K., Philippsen, A., Reinbold, R., Scholer, H.R., Wilmanns, M.","Mol.Cell",8,569,2001,"Differential Dimer Activities of the Transcription Factor Oct-1 by DNA-Induced Interface Swapping"]
["1HJC","1HJC","y",2.7,3.12,41,0.22,"1HJC",11257229,61,"Tahirov, T.H., Inoue-Bungo, T., Morii, H., Fujikawa, A., Sasaki, M., Kimura, K., Shiina, M., Sato, K., Kumasaka, T., Yamamoto, M., Ishii, S., Ogata, K.","Cell",104,755,2001,"Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta"]
["1HLO","1HLO","y",2.8,3.09,58,0.21,"PDT042",9115440,null,"Brownlie, P., Ceska, T., Lamers, M., Romier, C., Stier, G., Teo, H., Suck, D.","Structure",5,509,1997,"The crystal structure of an intact human Max-DNA complex: new insights into mechanisms of transcriptional control."]
["1HLV","1HLV","y",2.5,2.82,51,0.22,"PD0192",11726497,75,"Tanaka, Y., Nureki, O., Kurumizaka, H., Fukai, S., Kawaguchi, S., Ikuta, M., Iwahara, J., Okazaki, T., Yokoyama, S.","EMBO J.",20,6612,2001,"Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA."]
["1HW2","1HW2","y",3.3,3.23,71,0.24,"PD0199",11279025,72,"Xu, Y., Heath, R.J., Li, Z., Rock, C.O., White, S.W.","J.Biol.Chem.",276,17373,2001,"The FadR.DNA complex. Transcriptional control of fatty acid metabolism in Escherichia coli."]
["1I3J","1I3J","y",2.2000000000000002,2.1,80,0.22,"PD0200",11447104,58,"Van Roey, P., Waddling, C.A., Fox, K.M., Belfort, M., Derbyshire, V.","EMBO J.",20,3631,2001,"Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate."]
["1I6J","1I6J","y",2,2.48,35,0.23,"PD0202",11526315,55,"Cote, M.L., Georgiadis, M.M.","Acta Cr. D",57,1238,2001,"Structure of a pseudo-16-mer DNA with stacked guanines and two G-A mispairs complexed with the N-terminal fragment of Moloney murine leukemia virus reverse transcriptase."]
["1I7D","1I7D","y",2.1,2.7,25,0.23,"PD0203",11429611,59,"Changela, A., DiGate, R.J., Mondragon, A.","Nature",411,1077,2001,"Crystal structure of a complex of a type IA DNA topoisomerase with a single-stranded DNA molecule."]
["1IAW","1IAW","y",2.4,2.9,37,0.24,"PD0207",11473254,55,"Huai, Q., Colandene, J.D., Topal, M.D., Ke, H.","Nat.Struct.Biol.",8,665,2001,"Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangement."]
["1IC8","1IC8","y",2.6,3.91,5,0.26,"PD0208",12453420,45,"Chi, Y-.I., Frantz, J.D., Oh, B-.C., Hansen, L., Dhe-Paganon, S., Shoelson, S.E.","Mol.Cell",10,1129,2002,"Diabetes mutations delineate an    atypical POU domains in HNF1-Alpha"]
["1IF1","1IF1","y",3,4.8600000000000003,0,0.24,"PDR035",9422515,60,"Escalante, C.R., Yie, J., Thanos, D., Aggarwal, A.K.","Nature",391,103,1998,"Structure of IRF-1 with bound DNA reveals determinants of interferon regulation."]
["1IG7","1IG7","y",2.2000000000000002,3.06,14,0.21,"PD0211",11580277,55,"Hovde, S., Abate-Shen, C., Geiger, J.H.","Biochemistry",40,12013,2001,"Crystal structure of the Msx-1 homeodomain/DNA complex"]
["1IGN","1IGN","y",2.2999999999999998,2.59,48,0.22,"PDT035",8620531,null,"Konig, P., Giraldo, R., Chapman, L., Rhodes, D.","Cell",85,125,1996,"The crystal structure of the DNA-binding domain of yeast RAP1 in complex with telomeric DNA."]
["1IJS","1IJS","y",3.3,3.9,25,null,"PDV005",8918534,null,"Llamas-Saiz, A.L., Agbandje-McKenna, M., Parker, J.S., Wahid, A.T., Parrish, C.R., Rossmann, M.G.","Virology",225,65,1996,"Structural analysis of a mutation in canine parvovirus which controls antigenicity and host range."]
["1IMH","1IMH","y",2.9,3.35,43,0.24,"PD0214",11780147,61,"Stroud, J.C., Lopez-Rodriguez, C., Rao, A., Chen, L.","Nat.Struct.Biol.",9,90,2002,"Structure of a TonEBP-DNA complex reveals DNA encircled by a transcription factor."]
["1IO4","1IO4","y",3,3.53,36,0.25,"PD0198",11257229,70,"Tahirov, T.H., Inoue-Bungo, T., Morii, H., Fujikawa, A., Sasaki, M., Kimura, K., Shiina, M., Sato, K., Kumasaka, T., Yamamoto, M., Ishii, S., Ogata, K.","Cell",104,755,2001,"Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta."]
["1IPP","1IPP","y",2.2000000000000002,3.22,10,0.21,"PDE0144",9665136,60,"Flick, K.E., Jurica, M.S., Monnat Jr., R.J., Stoddard, B.L.","Nature",394,96,1998,"DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI."]
["1IU3","1IU3","y",3,4.1100000000000003,8,0.24,"PD0297",14704346,null,"Fujikawa, N., Kurumizaka, H., Nureki, O., Tanaka, Y., Yamazoe, M., Hiraga, S., Yokoyama, S.","NAR",32,82,2004,"Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein."]
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["1J1V","1J1V","y",2.1,2.19,68,0.23,"PD0371",12682358,51,"Fujikawa, N., Kurumizaka, H., Nureki, O., Terada, T., Shirouzu, M., Katayama, T., Yokoyama, S.","NAR",31,2077,2003,"Structural basis of replication origin recognition by the DnaA protein"]
["1J3E","1J3E","y",2.5,3.23,23,0.23,"PD0390",14704346,43,"Fujikawa, N., Kurumizaka, H., Nureki, O., Tanaka, Y., Yamazoe, M., Hiraga, S., Yokoyama, S.","NAR",32,82,2004,"Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein"]
["1JE8","1JE8","y",2.1,2.4300000000000002,49,0.23,"PD0219",12352954,53,"Maris, A.E., Sawaya, M.R., Kaczor-Grzeskowiak, M., Jarvis, M.R., Bearson, S.M., Kopka, M.L., Schroder, I., Gunsalus, R.P., Dickerson, R.E.","Nat.Struct.Biol.",9,771,2002,"Dimerization allows DNA target site recognition by the NarL response regulator."]
["1JEY","1JEY","y",2.5,2.6,69,0.22,"PD0220",11493912,45,"Walker, J.R., Corpina, R.A., Goldberg, J.","Nature",412,607,2001,"Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair."]
["1JFI","1JFI","y",2.6,2.99,49,0.24,"PD0221",11461703,56,"Kamada, K., Shu, F., Chen, H., Malik, S., Stelzer, G., Roeder, R.G., Meisterernst, M., Burley, S.K.","Cell",106,71,2001,"Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex."]
["1JGG","1JGG","y",2,3.38,3,0.23,"PDT031",8557047,37,"Hirsch, J.A., Aggarwal, A.K.","EMBO J.",14,6280,1995,"Structure of the even-skipped homeodomain complexed to AT-rich DNA: new perspectives on homeodomain specificity."]
["1JJ4","1JJ4","y",2.4,2.52,67,0.21,"PD0227",10906136,48,"Kim, S.S., Tam, J.K., Wang, A.F., Hegde, R.S.","J.Biol.Chem.",275,31245,2000,"The structural basis of DNA target discrimination by papillomavirus E2 proteins."]
["1JK2","1JK2","y",1.7,2.5099999999999998,17,0.23,"PD0231",11800559,45,"Miller, J.C., Pabo, C.O.","J.Mol.Biol.",313,309,2001,"Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition."]
["1JKO","1JKO","y",2.2000000000000002,3.25,9,0.24,"PD0234",11847127,52,"Chiu, T.K., Sohn, C., Dickerson, R.E., Johnson, R.C.","EMBO J.",21,801,2002,"Testing water-mediated DNA recognition by the Hin recombinase."]
["1JKP","1JKP","y",2.8,2.93,69,0.25,"PD0235",11847127,53,"Chiu, T.K., Sohn, C., Dickerson, R.E., Johnson, R.C.","EMBO J.",21,801,2002,"Testing water-mediated DNA recognition by the Hin recombinase."]
["1JKQ","1JKQ","y",2.9,3.75,18,0.26,"PD0236",11847127,53,"Chiu, T.K., Sohn, C., Dickerson, R.E., Johnson, R.C.","EMBO J.",21,801,2002,"Testing water-mediated DNA recognition by the Hin recombinase."]
["1JKR","1JKR","y",2.2999999999999998,3.13,18,0.27,"PD0237",11847127,54,"Chiu, T.K., Sohn, C., Dickerson, R.E., Johnson, R.C.","EMBO J.",21,801,2002,"Testing water-mediated DNA recognition by the Hin recombinase."]
["1JMC","1JMC","y",2.4,3.31,14,0.21,"PDO001",8990123,40,"Bochkarev, A., Pfuetzner, R.A., Edwards, A.M., Frappier, L.","Nature",385,176,1997,"Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA."]
["1JNM","1JNM","y",2.2000000000000002,2.97,19,0.23,"PD0241",null,60,"Kim, Y., Podust, L.M.","TBP",null,null,null,"Crystal Structure of the Jun bZIP homodimer complexed with CRE"]
["1JT0","1JT0","y",2.9,3.64,24,0.22,"PD0249",11867549,null,"Schumacher, M.A., Miller, M.C., Grkovic, S., Brown, M.H., Skurray, R.A., Brennan, R.G.","EMBO J.",21,1210,2002,"Structural basis for cooperative DNA binding by two dimers of the multidrug-binding protein QacR."]
["1JX4","1JX4","y",1.7,2.38,25,0.21,"PD0251",11595188,53,"Ling, H., Boudsocq, F., Woodgate, R., Yang, W.","Cell",107,91,2001,"Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication."]
["1JXL","1JXL","y",2.1,2.29,60,0.28000000000000003,"PD0252",11595188,53,"Ling, H., Boudsocq, F., Woodgate, R., Yang, W.","Cell",107,91,2001,"Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication."]
["1K3X","1K3X","y",1.3,2.0499999999999998,25,0.15,"PD0254",11847126,61,"Zharkov, D.O., Golan, G., Gilboa, R., Fernandes, A.S., Gerchman, S.E., Kycia, J.H., Rieger, R.A., Grollman, A.P., Shoham, G.","EMBO J.",21,789,2002,"Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate."]
["1K4S","1K4S","y",3.2,4.0999999999999996,13,0.22,"PD0255",12426403,64,"Staker, B.L., Hjerrild, K., Feese, M.D., Behnke, C.A., Burgin Jr., A.B., Stewart, L.J.","PNAS",99,15387,2002,"The mechanism of topoisomerase I poisoning by a camptothecin analog"]
["1K61","1K61","y",2.1,2.34,55,0.22,"PD0257",12466549,41,"Aishima, J., Gitti, R.K., Noah, J.E., Gan, H.H., Schlick, T., Wolberger, C.","NAR",30,5244,2002,"A Hoogsteen base pair embedded in undistorted B-DNA"]
["1K6O","1K6O","y",3.2,3.39,58,0.27,"PD0258",11846562,61,"Mo, Y., Ho, W., Johnston, K., Marmorstein, R.","J.Mol.Biol.",314,495,2001,"Crystal structure of a ternary SAP-1/SRF/c-fos SRE DNA complex."]
["1K78","1K78","y",2.2999999999999998,2.4500000000000002,59,0.23,"PD0259",11779502,54,"Garvie, C.W., Hagman, J., Wolberger, C.","Mol.Cell",8,1267,2001,"Structural studies of Ets-1/Pax5 complex formation on DNA."]
["1K79","1K79","y",2.4,2.67,55,0.23,"PD0260",11779502,55,"Garvie, C.W., Hagman, J., Wolberger, C.","Mol.Cell",8,1267,2001,"Structural studies of Ets-1/Pax5 complex formation on DNA."]
["1K7A","1K7A","y",2.8,2.81,77,0.23,"PD0261",11779502,55,"Garvie, C.W., Hagman, J., Wolberger, C.","Mol.Cell",8,1267,2001,"Structural studies of Ets-1/Pax5 complex formation on DNA."]
["1K82","1K82","y",2.1,2.72,27,0.21,"PD0264",11912217,49,"Gilboa, R., Zharkov, D.O., Golan, G., Fernandes, A.S., Gerchman, S.E., Matz, E., Kycia, J.H., Grollman, A.P., Shoham, G.","J.Biol.Chem.",277,19811,2002,"Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA."]
["1K8G","1K8G","y",2.6,3.21,32,0.25,"PD0266",11743727,52,"Classen, S., Ruggles, J.A., Schultz, S.C.","J.Mol.Biol.",314,1113,2001,"Crystal structure of the N-terminal domain of Oxytricha nova telomere end-binding protein alpha subunit both uncomplexed and complexed with telomeric ssDNA."]
["1KB2","1KB2","y",2.7,3.14,44,0.23,"PD0268",11980721,61,"Shaffer, P.L., Gewirth, D.T.","EMBO J.",21,2242,2002,"Structural basis of VDR-DNA interactions on direct repeat response elements."]
["1KB4","1KB4","y",2.8,3.2,49,0.21,"PD0269",11980721,60,"Shaffer, P.L., Gewirth, D.T.","EMBO J.",21,2242,2002,"Structural basis of VDR-DNA interactions on direct repeat response elements."]
["1KB6","1KB6","y",2.7,3.38,26,0.22,"PD0270",11980721,59,"Shaffer, P.L., Gewirth, D.T.","EMBO J.",21,2242,2002,"Structural basis of VDR-DNA interactions on direct repeat response elements."]
["1KC6","1KC6","y",2.6,3.07,42,0.22,"PD0272",11742344,57,"Horton, N.C., Dorner, L.F., Perona, J.J.","Nat.Struct.Biol.",9,42,2002,"Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation."]
["1KFV","1KFV","y",2.6,3.14,33,0.25,"PD0277",12065399,43,"Serre, L., Pereira de Jesus, K., Boiteux, S., Zelwer, C., Castaing, B.","EMBO J.",21,2854,2002,"Crystal structure of the Lactococcus lactis formamidopyrimidine-DNA glycosylase bound to an abasic site analogue-containing DNA."]
["1KIX","1KIX","y",2.7,2.34,92,0.21,"PD0278",11836536,82,"Peersen, O.B., Ruggles, J.A., Schultz, S.C.","Nat.Struct.Biol.",9,182,2002,"Dimeric structure of the Oxytricha nova telomere end-binding protein alpha-subunit bound to ssDNA."]
["1KLN","1KLN","y",3.2,3.55,48,0.23,"PDE004",8469987,60,"Beese, L.S., Derbyshire, V., Steitz, T.A.","Science",260,352,1993,"Structure of DNA polymerase I Klenow fragment bound to duplex DNA."]
["1KSX","1KSX","y",3.2,3.47,53,0.26,"PD0282",11889054,63,"Enemark, E.J., Stenlund, A., Joshua-Tor, L.","EMBO J.",21,1487,2002,"Crystal structures of two intermediates in the assembly of the papillomavirus replication initiation complex."]
["1KSY","1KSY","y",3.1,3.18,64,0.28000000000000003,"PD0283",11889054,68,"Enemark, E.J., Stenlund, A., Joshua-Tor, L.","EMBO J.",21,1487,2002,"Crystal structures of two intermediates in the assembly of the papillomavirus replication initiation complex."]
["1KU7","1KU7","y",2.4,3.18,20,0.26,"PD0284",11931761,44,"Campbell, E.A., Muzzin, O., Chlenov, M., Sun, J.L., Olson, C.A., Weinman, O., Trester-Zedlitz, M.L., Darst, S.A.","Mol.Cell",9,527,2002,"Structure of the bacterial RNA polymerase promoter specificity sigma subunit."]
["1L1Z","1L1Z","y",1.7,1.62,84,0.22,"PD0293",12055620,59,"Fromme, J.C., Verdine, G.L.","Nat.Struct.Biol.",9,544,2002,"Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM."]
["1L2B","1L2B","y",2.4,2.17,87,0.21,"PD0294",12055620,58,"Fromme, J.C., Verdine, G.L.","Nat.Struct.Biol.",9,544,2002,"Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM."]
["1L2C","1L2C","y",2.2000000000000002,1.79,94,0.21,"PD0295",12055620,61,"Fromme, J.C., Verdine, G.L.","Nat.Struct.Biol.",9,544,2002,"Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM."]
["1L2D","1L2D","y",2,1.8,86,0.22,"PD0296",12055620,60,"Fromme, J.C., Verdine, G.L.","Nat.Struct.Biol.",9,544,2002,"Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM."]
["1L3L","1L3L","y",1.7,2.25,33,0.25,"PD0298",12087407,51,"Zhang, R.G., Pappas, T., Brace, J.L., Miller, P.C., Oulmassov, T., Molyneaux, J.M., Anderson, J.C., Bashkin, J.K., Winans, S.C., Joachimiak, A.","Nature",417,971,2002,"Structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA."]
["1LB2","1LB2","y",3.1,3.74,29,0.21,"PD0306",12202833,78,"Benoff, B., Yang, H., Lawson, C.L., Parkinson, G., Liu, J., Blatter, E., Ebright, Y.W., Berman, H.M., Ebright, R.H.","Science",297,1562,2002,"Structural basis of transcription activation: the CAP-alpha CTD-DNA complex."]
["1LE5","1LE5","y",2.8,3.97,7,0.26,"PD0307",11970948,57,"Berkowitz, B., Huang, D.B., Chen-Park, F.E., Sigler, P.B., Ghosh, G.","J.Biol.Chem.",277,24694,2002,"The X-ray crystal structure of the   NF-kB p50/p65 heterodimer bound   to the Interferon beta-kB site"]
["1LE8","1LE8","y",2.2999999999999998,3.05,21,0.26,"PD0308",12121651,50,"Ke, A., Mathias, J.R., Vershon, A.K., Wolberger, C.","Structure",10,961,2002,"Structural and Thermodynamic Characterization of the DNA Binding Properties of a Triple Alanine Mutant of MATalpha2"]
["1LE9","1LE9","y",3,4.09,8,0.25,"PD0309",11970948,57,"Berkowitz, B., Huang, D.B., Chen-Park, F.E., Sigler, P.B., Ghosh, G.","J.Biol.Chem.",277,24694,2002,"The x-ray crystal structure of the NF-kappa B p50.p65 heterodimer bound to the interferon beta -kappa B site."]
["1LEI","1LEI","y",2.7,3.57,16,0.25,"PD0310",11970949,68,"Chen-Park, F.E., Huang, D.B., Noro, B., Thanos, D., Ghosh, G.","J.Biol.Chem.",277,24701,2002,"The kB DNA sequence from the HIV Long Terminal Repeat functions as an allosteric regulator of HIV transcription"]
["1LLM","1LLM","y",1.5,1.9,51,0.22,"PD0312",14621985,72,"Wolfe, S.A., Grant, R.A., Pabo, C.O.","Biochemistry",42,13401,2003,"Structure of a designed dimeric zinc finger protein bound to DNA."]
["1LPQ","1LPQ","y",3.1,3.79,27,0.26,"PD0313",12209008,60,"Lesher, D.T., Pommier, Y., Stewart, L., Redinbo, M.R.","PNAS",99,12102,2002,"8-Oxoguanine rearranges the active site of human topoisomerase I"]
["1LQ1","1LQ1","y",2.2999999999999998,3.41,8,0.22,"PD0314",12176382,54,"Zhao, H., Msadek, T., Zapf, J., Madhusudan, Hoch, J.A., Varughese, K.I.","Structure",10,1041,2002,"DNA complexed structure of the key transcription factor initiating development in sporulating bacteria."]
["1LRR","1LRR","y",2.7,3.12,41,0.25,"PD0315",12379844,60,"Guarne, A., Zhao, Q., Guirlando, R., Yang, W.","NAT.STRUCT.BIOL.",9,839,2002,"Insights into negative modulation of E. coli replication initiation from the structure of SeqA-hemimethylated DNA complex"]
["1LWT","1LWT","y",3.2,3.99,18,0.24,"PD0320",12219083,56,"Moure, C.M., Gimble, F.S., Quiocho, F.A.","Nat.Struct.Biol.",9,764,2002,"Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition sequence."]
["1M5R","1M5R","y",1.8,1.77,80,0.19,"PD0334",12445783,48,"Lariviere, L., Morera, S.","J.Mol.Biol.",324,483,2002,"A Base-flipping mechanism for the T4 phage beta-glucosyltransferase and  identification of a transition state analog"]
["1M6X","1M6X","y",2.8,3.07,59,0.24,"PD0336",12559911,56,"Conway, A.B., Chen, Y., Rice, P.A.","J.Mol.Biol.",326,425,2003,"Structural Plasticity of the Flp-Holliday Junction Complex"]
["1MA7","1MA7","y",2.2999999999999998,3.86,2,0.24,"PD0337",12779336,58,"Martin, S.S., Chu, V.C., Baldwin, E.P.","Biochemistry",42,6814,2003,"Modulation of the active complex assembly and turnover rate by protein-DNA   interactions in Cre-LoxP recombination"]
["1MDM","1MDM","y",2.8,3.5,27,0.26,"PD0338",12221090,57,"Garvie, C.W., Pufall, M.A., Graves, B.J., Wolberger, C.","J.Biol.Chem.",277,45529,2002,"STRUCTURAL ANALYSIS OF THE AUTOINHIBITION OF ETS-1 AND ITS ROLE IN PROTEIN PARTNERSHIPS"]
["1MDY","1MDY","y",2.8,3.48,28,0.25,"PDT016",8181063,null,"Ma, P.C., Rould, M.A., Weintraub, H., Pabo, C.O.","Cell",77,451,1994,"Crystal structure of MyoD bHLH domain-DNA complex: perspectives on DNA recognition and implications for transcriptional activation."]
["1MEY","1MEY","y",2.2000000000000002,3.2,10,0.22,"PDTB41",8901872,51,"Kim, C.A., Berg, J.M.","Nat.Struct.Biol.",3,940,1996,"A 2.2 A Resolution Crystal Structure of a Designed Zinc Finger Protein Bound to DNA"]
["1MJM","1MJM","y",2.2000000000000002,2.4900000000000002,52,0.23,"PD0245",10986458,50,"Garvie, C.W., Phillips, S.E.","Structure Fold.Des.",8,905,2000,"Direct and indirect readout in mutant Met repressor-operator complexes."]
["1MJO","1MJO","y",2.1,2.84,20,0.19,"PD0246",10986458,58,"Garvie, C.W., Phillips, S.E.","Structure Fold.Des.",8,905,2000,"Direct and indirect readout in mutant Met repressor-operator complexes."]
["1MJQ","1MJQ","y",2.4,3.47,9,0.22,"PD0248",10986458,58,"Garvie, C.W., Phillips, S.E.","Structure Fold.Des.",8,905,2000,"Direct and indirect readout in mutant Met repressor-operator complexes."]
["1MNM","1MNM","y",2.2999999999999998,2.36,66,0.24,"PDR036",9490409,62,"Tan, S., Richmond, T.J.","Nature",391,660,1998,"Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex."]
["1MNN","1MNN","y",1.4,1.99,37,0.2,"PD0341",12411490,47,"Lamoureux, J.S., Stuart, D., Tsang, R., Wu, C., Glover, J.N.","EMBO J.",21,5721,2002,"Structure of the sporulation-specific transcription factor Ndt80 bound to DNA"]
["1MOW","1MOW","y",2.4,2.72,51,0.23,"PD0342",12419232,69,"Chevalier, B.S., Kortemme, T., Chadsey, M.S., Baker, D., Monnat Jr., R.J., Stoddard, B.L.","Mol.Cell",10,895,2002,"Design, Activity and Structure of a Highly Specific Artificial Endonuclease"]
["1MUR","1MUR","y",2.5,3.29,20,0.2,"PD0349",11896402,62,"Lovell, S., Goryshin, I.Y., Reznikoff, W.R., Rayment, I.","Nat.Struct.Biol.",9,278,2002,"Two-metal active site binding of a Tn5 transposase synaptic complex."]
["1MUS","1MUS","y",1.9,2.48,29,0.19,"PD0350",15102449,62,"Steiniger-White, M., Rayment, I., Reznikoff, W.S.","Curr.Opin.Struct.Biol.",14,50,2004,"Structure/function insights into Tn5 transposition."]
["1MW8","1MW8","y",1.9,2.69,17,0.23,"PD0352",14604525,51,"Perry, K., Mondragon, A.","Structure",11,1349,2003,"Structure of a Complex between E. coli DNA Topoisomerase I and Single-Stranded DNA."]
["1MWJ","1MWJ","y",2.9,2.5099999999999998,91,0.23,"PD0354",10581234,53,"Barrett, T.E., Scharer, O., Savva, R., Brown, T., Jiricny, J., Verdine, G.L., Pearl, L.H.","EMBO J.",18,6599,1999,"Crystal Structure of a thwarted mismatch glycosylase DNA repair complex"]
["1N3F","1N3F","y",2,2.5499999999999998,30,0.2,"PD0361",12758074,45,"Chevalier, B., Turmel, M., Lemieux, C., Monnat, R.J., Stoddard, B.L.","J.Mol.Biol.",329,253,2003,"Flexible DNA Target Site Recognition by Divergent Homing Endonuclease Isoschizomers I-CreI and I-MsoI"]
["1N48","1N48","y",2.2000000000000002,2.62,41,0.2,"PD0358",null,61,"Ling, H., Boudsocq, F., Woodgate, R., Yang, W.","TBP",null,null,null,"A Y-family polymerase complexed with abasic lesions: catching DNA with a loaded nucleoside triphosphate"]
["1N4L","1N4L","y",2,2.71,20,0.24,"PD0359",12818202,47,"Cote', M.L., Pflomm, M., Georgiadis, M.M.","J.Mol.Biol.",330,57,2003,"Staying Straight with A-tracts: A DNA Analog of the HIV-1 Polypurine Tract"]
["1N56","1N56","y",2.4,2.93,35,0.23,"PD0362",null,54,"Ling, H., Boudsocq, F., Woodgate, R., Yang, W.","TBP",null,null,null,"A Y-family polymerase    complexed with abasic lesions:                                  catching DNA with a loaded                                  nucleoside triphosphate"]
["1N6J","1N6J","y",2.2000000000000002,2.5499999999999998,47,0.24,"PD0363",12700764,54,"Han, A., Pan, F., Stroud, J.C., Youn, H.D., Liu, J.O., Chen, L.","Nature",422,730,2003,"Sequence-specific recruitment of transcriptional co-repressor Cabin1 by myocyte enhancer factor-2"]
["1NFK","1NFK","y",2.2999999999999998,3.71,3,0.23,"PDT015",7530332,null,"Ghosh, G., van Duyne, G., Ghosh, S., Sigler, P.B.","Nature",373,303,1995,"Structure of NF-kappa B p50 homodimer bound to a kappa B site."]
["1NGM","1NGM","y",3,3.63,27,0.28000000000000003,"PD0368",12660736,80,"Juo, Z.S., Kassavetis, G.A., Wang, J., Geiduschek, E.P., Sigler, P.B.","Nature",422,534,2003,"Crystal structure of a transcription factor IIIB core interface ternary complex"]
["1NJW","1NJW","y",1.9,1.6,92,0.23,"PD0372",15035983,55,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NJX","1NJX","y",1.7,1.78,72,0.23,"PD0373",15035983,54,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NK5","1NK5","y",2.1,2.14,71,0.21,"PD0378",15035983,54,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NK6","1NK6","y",2.1,1.94,84,0.24,"PD0379",15035983,57,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NK7","1NK7","y",1.9,1.75,85,0.22,"PD0380",15035983,55,"Johnson, S.J., Beese, L.S.","Cell",116,803,2004,"Structures of mismatch replication errors observed in a DNA polymerase."]
["1NKP","1NKP","y",1.8,2.37,32,0.22,"PD0386",12553908,null,"Nair, S.K., Burley, S.K.","Cell",112,193,2003,"X-ray structures of Myc-Max and Mad-Max recognizing DNA: Molecular bases of regulation by proto-oncogenic transcription factors"]
["1NLW","1NLW","y",2,2.81,16,0.26,"PD0387",12553908,53,"Nair, S.K., Burley, S.K.","Cell",112,193,2003,"X-ray structures of Myc-Max and Mad-Max recognizing DNA: Molecular bases of regulation by proto-oncogenic transcription factors"]
["1NNJ","1NNJ","y",1.9,2.09,61,0.22,"PD0389",16243784,66,"Pereira de Jesus, K., Serre, L., Zelwer, C., Castaing, B.","NAR",33,5936,2005,"Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA."]
["1NOP","1NOP","y",2.2999999999999998,2.3199999999999998,74,0.21,"PD0391",12618186,44,"Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.J.","Chem.Biol.",10,139,2003,"Crystal structure of a transition state mimic for Tdp1 assembled from vanadate, DNA, and a topoisomerase I-derived peptide"]
["1NVP","1NVP","y",2.1,2.44,47,0.23,"PD0393",12972251,57,"Bleichenbacher, M., Tan, S., Richmond, T.J.","J.Mol.Biol.",332,783,2003,"Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes."]
["1NWQ","1NWQ","y",2.8,4.18,4,0.22,"PD0395",12578822,74,"Miller, M., Shuman, J.D., Sebastian, T., Dauter, Z., Johnson, P.F.","J.Biol.Chem.",278,15178,2003,"Structural Basis for DNA Recognition by the Basic Region Leucine Zipper  Transcription Factor CCAAT/enhancer Binding Protein Alpha"]
["1O3R","1O3R","y",3,2.98,76,0.23,"PD0399",11724532,69,"Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.","J.Mol.Biol.",314,63,2001,"Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: DNA Binding Specificity Based on Energetics of DNA Kinking"]
["1O3T","1O3T","y",2.8,4.18,4,0.23,"PD0401",11724532,61,"Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.","J.Mol.Biol.",314,63,2001,"Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex:   DNA Binding Specificity Based on Energetics of DNA Kinking"]
["1OCT","1OCT","y",3,2.84,84,0.24,"PDT019",8156594,null,"Klemm, J.D., Rould, M.A., Aurora, R., Herr, W., Pabo, C.O.","Cell",77,21,1994,"Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules."]
["1ODG","1ODG","y",2.8,3.81,13,0.28999999999999998,"1ODG",12626704,71,"Bunting, K.A., Roe, S.M., Headley, A., Brown, T., Savva, R., Pearl, L.H.","NAR",31,1633,2003,"Crystal Structure of the Escherichia Coli Dcm Very-Short-Patch DNA Repair Endonuclease Bound to its Reaction Product-Site in a DNA Superhelix"]
["1ODH","1ODH","y",2.9,3.53,27,0.22,"1ODH",12682016,48,"Cohen, S.X., Moulin, M., Hashemolhosseini, S., Kilian, K., Wegner, M., Muller, C.W.","EMBO J.",22,1835,2003,"Crystal Structure of the Gcm Domain-DNA Complex: A DNA-Binding Domain with a Novel Fold and Mode of Target Site Recognition"]
["1OH7","1OH7","y",2.5,2.72,60,0.23,"1OH7",12907723,52,"Natrajan, G., Lamers, M.H., Enzlin, J.H., Winterwerp, H.H.K., Perrakis, A., Sixma, T.K.","NAR",31,4814,2003,"Structures of E. Coli DNA Mismatch Repair Enzyme Muts in Complex with Different Mismatches: A Common Recognition Mode for Diverse Substrates"]
["1OH8","1OH8","y",2.9,3,70,0.22,"1OH8",12907723,52,"Natrajan, G., Lamers, M.H., Enzlin, J.H., Winterwerp, H.H.K., Perrakis, A., Sixma, T.K.","NAR",31,4814,2003,"Structures of E. Coli DNA Mismatch Repair Enzyme Muts in Complex with Different Mismatches: A Common Recognition Mode for Diverse Substrates"]
["1ORP","1ORP","y",2.2000000000000002,2.42,58,0.24,"PD0397",12840008,52,"Fromme, J.C., Verdine, G.L.","EMBO J.",22,3461,2003,"Structure of a Trapped Endonuclease III-DNA Covalent Intermediate"]
["1OTC","1OTC","y",2.8,2.5,91,0.25,"PD0074",9875850,60,"Horvath, M.P., Schweiker, V.L., Bevilacqua, J.M., Ruggles, J.A., Schultz, S.C.","Cell",95,963,1998,"Crystal structure of the Oxytricha nova telomere end binding protein complexed with single strand DNA."]
["1OUP","1OUP","y",2.2999999999999998,2.72,43,0.19,"PD0403",12881435,36,"Li, C.-L., Hor, L.-I., Chang, Z.-F., Tsai, L.-C., Yang, W.-Z., Yuan, H.S.","EMBO J.",22,4014,2003,"DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site."]
["1OUQ","1OUQ","y",3.2,3.76,33,0.21,"PD0404",12954782,74,"Ennifar, E., Meyer, J.E.W., Buchholz, F., Stewart, A.F., Suck, D.","NAR",31,5449,2003,"Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation"]
["1OWF","1OWF","y",2,2.2999999999999998,47,0.23,"PD0406",12842466,56,"Lynch, T.W., Read, E.K., Mattis, A.N., Gardner, J.F., Rice, P.A.","J.Mol.Biol.",330,493,2003,"Integration Host Factor: putting a twist on protein-DNA recognition"]
["1OWG","1OWG","y",2.1,2.16,70,0.23,"PD0407",12842466,56,"Lynch, T.W., Read, E.K., Mattis, A.N., Gardner, J.F., Rice, P.A.","J.Mol.Biol.",330,493,2003,"Integration Host Factor: putting a twist on protein-DNA recognition"]
["1OWR","1OWR","y",3,3.25,57,0.24,"PD0408",14643663,62,"Stroud, J.C., Chen, L.","J.Mol.Biol.",334,1009,2003,"Structure of NFAT Bound to DNA as a Monomer"]
["1P47","1P47","y",2.2000000000000002,3.41,5,0.22,"PD0424",12818197,71,"Peisach, E., Pabo, C.O.","J.Mol.Biol.",330,1,2003,"Constraints for Zinc Finger Linker Design as Inferred from X-ray Crystal Structure of Tandem Zif268-DNA Complexes"]
["1P4E","1P4E","y",2.7,2.79,69,0.24,"PD0425",12716882,57,"Rice, P.A., Chen, Y.","J.Biol.Chem.",278,24800,2003,"The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis"]
["1P51","1P51","y",2.5,2.2000000000000002,90,0.28999999999999998,"PD0426",12853489,55,"Swinger, K.K., Lemberg, K.M., Zhang, Y., Rice, P.A.","EMBO J.",22,3749,2003,"Flexible DNA bending in HU-DNA cocrystal structures"]
["1P5W","1P5W","y",3.3,2.71,95,0.2,"PD0432",14581558,null,"Govindasamy, L., Hueffer, K., Parrish, C.R., Agbandje-McKenna, M.","J.Virol.",77,12211,2003,"Structures of host range-controlling regions of the capsids of canine and feline parvoviruses and mutants."]
["1P71","1P71","y",1.9,2.4300000000000002,32,0.25,"PD0430",12853489,52,"Swinger, K.S., Lemberg, K.M., Zhang, Y., Rice, P.A.","EMBO J.",22,3749,2003,"Flexible DNA bending in HU-DNA cocrystal structures"]
["1P78","1P78","y",2.2999999999999998,2.37,65,0.24,"PD0431",12853489,54,"Swinger, K.S., Lemberg, K.M., Zhang, Y., Rice, P.A.","EMBO J.",22,3749,2003,"Flexible DNA bending in HU-DNA cocrystal structures"]
["1P7D","1P7D","y",3,2.95,75,0.23,"PD0428",12887904,55,"Aihara, H., Kwon, H.J., Nunes-Duby, S.E., Landy, A., Ellenberger, T.","Mol.Cell",12,187,2003,"A Conformational Switch Controls the DNA Cleavage Activity of Lambda Integrase"]
["1P7H","1P7H","y",2.6,3.24,30,0.23,"PD0429",12949493,59,"Giffin, M.J., Stroud, J.C., Bates, D.L., von Koenig, K.D., Hardin, J., Chen, L.","Nat.Struct.Biol.",10,800,2003,"Structure of NFAT1 bound as a dimer to the HIV-1 LTR kappa B element"]
["1PDN","1PDN","y",2.5,2.52,74,0.23,"PDR018",7867071,68,"Xu, W., Rould, M.A., Jun, S., Desplan, C., Pabo, C.O.","Cell",80,639,1995,"Crystal structure of a paired domain-DNA complex at 2.5 A resolution reveals structural basis for Pax developmental mutations."]
["1PER","1PER","y",2.5,3.25,22,0.19,"PDR015",8081737,null,"Rodgers, D.W., Harrison, S.C.","Structure",1,227,1993,"The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites."]
["1PGZ","1PGZ","y",2.6,2.93,52,0.24,"PD0445",12904298,48,"Myers, J.C., Moore, S.A., Shamoo, Y.","J.Biol.Chem.",278,42300,2003,"Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures"]
["1PH1","1PH1","y",2.5,2.66,65,0.23,"PD0435",12912928,59,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide Shuffling and Ssdna Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes"]
["1PH2","1PH2","y",3.1,2.66,93,0.22,"PD0436",12912928,60,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes"]
["1PH5","1PH5","y",2.2999999999999998,2.5499999999999998,57,0.23,"PD0439",12912928,59,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes"]
["1PH6","1PH6","y",2.1,2.46,46,0.24,"PD0440",12912928,59,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes"]
["1PHJ","1PHJ","y",2.5,2.89,46,0.25,"PD0444",12912928,59,"Theobald, D.L., Schultz, S.C.","EMBO J.",22,4314,2003,"Nucleotide Shuffling and ssDNA Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes"]
["1PJJ","1PJJ","y",1.9,2.12,58,0.2,"PD0447",16243784,67,"Pereira de Jesus, K., Serre, L., Zelwer, C., Castaing, B.","NAR",33,5936,2005,"Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA."]
["1PO6","1PO6","y",2.1,2.09,74,0.23,"PD0451",12904298,48,"Myers, J.C., Moore, S.A., Shamoo, Y.","J.BIOL.CHEM.",278,42300,2003,"Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures"]
["1PP7","1PP7","y",2.5,3.3,17,0.2,"PD0452",14622596,41,"Schumacher, M.A., Lau, A.O.T., Johnson, P.J.","Cell",115,413,2003,"Structural Basis of Core Promoter Recognition in a Primitive Eukaryote"]
["1PP8","1PP8","y",3.1,4.49,2,0.27,"PD0453",14622596,71,"Schumacher, M.A., Lau, A.O.T., Johnson, P.J.","Cell",115,413,2003,"Structural Basis of Core Promoter Recognition in a Primitive Eukaryote"]
["1PT3","1PT3","y",2.5,3.03,35,0.22,"PD0454",14962381,49,"Hsia, K.C., Chak, K.F., Liang, P.H., Cheng, Y.S., Ku, W.Y., Yuan, H.S.","STRUCTURE",12,205,2004,"DNA binding and degradation by the HNH protein ColE7."]
["1PUE","1PUE","y",2.1,3.18,8,0.23,"PDT033",8602247,48,"Kodandapani, R., Pio, F., Ni, C.Z., Piccialli, G., Klemsz, M., McKercher, S., Maki, R.A., Ely, K.R.","Nature",380,456,1996,"A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex."]
["1PUF","1PUF","y",1.9,2.13,57,0.23,"PD0455",12923056,59,"LARONDE-LEBLANC, N.A., Wolberger, C.","Genes Dev.",17,2060,2003,"STRUCTURE OF HOXA9 AND PBX1 BOUND TO DNA: HOX HEXAPEPTIDE AND DNA RECOGNITION ANTERIOR TO POSTERIOR"]
["1PVI","1PVI","y",2.6,3.03,45,0.19,"PDE017",8076590,null,"Cheng, X., Balendiran, K., Schildkraut, I., Anderson, J.E.","EMBO J.",13,3927,1994,"Structure of PvuII endonuclease with cognate DNA."]
["1PVR","1PVR","y",2.7,3.77,9,0.21,"PD0459",14652076,58,"Baldwin, E.P., Martin, S.S., Abel, J., Gelato, K.A., Kim, H., Schultz, P.G., Santoro, S.W.","Chem.Biol.",10,1085,2003,"A specificity switch in selected cre recombinase variants is mediated by macromolecular plasticity and water."]
["1PYI","1PYI","y",3.2,4.28,6,0.25,"PDT017",7958913,null,"Marmorstein, R., Harrison, S.C.","Genes Dev.",8,2504,1994,"Crystal structure of a PPR1-DNA complex: DNA recognition by proteins containing a Zn2Cys6 binuclear cluster."]
["1PZU","1PZU","y",3.1,3.54,43,0.3,"PD0464",12949491,53,"Jin, L., Sliz, P., Chen, L., Macian, F., Rao, A., Hogan, P.G., Harrison, S.C.","Nat.Struct.Biol.",10,807,2003,"An asymmetric NFAT1 dimer on a pseudo-palindromic KB-like DNA site"]
["1Q0T","1Q0T","y",3.1,3.76,28,0.24,"PD0460",12937411,46,"Yang, Z., Horton, J.R., Zhou, L., Zhang, X.J., Dong, A., Zhang, X., Schlagman, S.L., Kossykh, V., Hattman, S., Cheng, X.","Nat.Struct.Biol.",10,849,2003,"Structure of the bacteriophage T4 DNA adenine methyltransferase"]
["1Q9X","1Q9X","y",2.7,3.27,34,0.22,"PD0465",15057282,57,"Freisinger, E., Grollman, A.P., Miller, H., Kisker, C.","EMBO J.",23,1494,2004,"Lesion (in)tolerance reveals insights into DNA replication fidelity."]
["1Q9Y","1Q9Y","y",2.8,3.18,51,0.21,"PD0466",15057282,54,"Freisinger, E., Grollman, A.P., Miller, H., Kisker, C.","EMBO J.",23,1494,2004,"Lesion (in)tolerance reveals insights into DNA replication fidelity."]
["1QAI","1QAI","y",2.2999999999999998,3.17,16,0.23,"PD0126",10669612,47,"Najmudin, S., Cote, M.L., Sun, D., Yohannan, S., Montano, S.P., Gu, J., Georgiadis, M.M.","J.Mol.Biol.",296,613,2000,"Crystal structures of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed with nucleic acid: functional implications for template-primer binding to the fingers domain."]
["1QAJ","1QAJ","y",2.2999999999999998,2.88,31,0.2,"PD0134",10669612,48,"Najmudin, S., Cote, M.L., Sun, D., Yohannan, S., Montano, S.P., Gu, J., Georgiadis, M.M.","J.Mol.Biol.",296,613,2000,"Crystal structures of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed with nucleic acid: functional implications for template-primer binding to the fingers domain."]
["1QBJ","1QBJ","y",2.1,2.48,43,0.23,"PH0001",10364558,37,"Schwartz, T., Rould, M.A., Lowenhaupt, K., Herbert, A., Rich, A.","Science",284,1841,1999,"Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA."]
["1QN3","1QN3","y",2,2.09,64,0.2,"1QN3",10617571,57,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QN4","1QN4","y",1.9,2.2599999999999998,46,0.21,"1QN4",10617571,56,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QN5","1QN5","y",1.9,2.08,62,0.2,"1QN5",10617571,57,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QN6","1QN6","y",2.1,2.2400000000000002,63,0.19,"1QN6",10617571,57,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QN7","1QN7","y",2.2999999999999998,2.35,72,0.19,"1QN7",10617571,57,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QN8","1QN8","y",2.1,2.27,61,0.19,"1QN8",10617571,57,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QN9","1QN9","y",1.9,2.27,45,0.21,"1QN9",10617571,57,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QNA","1QNA","y",1.8,1.85,74,0.19,"1QNA",10617571,57,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QNB","1QNB","y",2.2000000000000002,2.48,52,0.19,"1QNB",10617571,57,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QNC","1QNC","y",2.2999999999999998,2.37,71,0.18,"1QNC",10617571,56,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QNE","1QNE","y",1.9,2.36,38,0.2,"1QNE",10617571,57,"Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.-H., Kodadek, T., Burley, S.K.","Genes Dev.",13,3217,1999,"TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution"]
["1QP0","1QP0","y",2.9,4.04,8,0.17,"PD0057",10438625,68,"Glasfeld, A., Koehler, A.N., Schumacher, M.A., Brennan, R.G.","J.Mol.Biol.",291,347,1999,"The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions."]
["1QP4","1QP4","y",3,3.9,15,0.16,"PD0058",10438625,69,"Glasfeld, A., Koehler, A.N., Schumacher, M.A., Brennan, R.G.","J.Mol.Biol.",291,347,1999,"The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions."]
["1QP7","1QP7","y",2.9,3.96,10,0.17,"PD0059",10438625,68,"Glasfeld, A., Koehler, A.N., Schumacher, M.A., Brennan, R.G.","J.Mol.Biol.",291,347,1999,"The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions."]
["1QPI","1QPI","y",2.5,3.11,30,0.24,"PD0122",10700280,53,"Orth, P., Schnappinger, D., Hillen, W., Saenger, W., Hinrichs, W.","Nat.Struct.Biol.",7,215,2000,"Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system."]
["1QPZ","1QPZ","y",2.5,3.49,11,0.18,"PD0056",10438625,69,"Glasfeld, A., Koehler, A.N., Schumacher, M.A., Brennan, R.G.","J.Mol.Biol.",291,347,1999,"The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions."]
["1QQA","1QQA","y",3,3.92,14,0.15,"PD0060",10438625,null,"Glasfeld, A., Koehler, A.N., Schumacher, M.A., Brennan, R.G.","J.Mol.Biol.",291,347,1999,"The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions."]
["1QQB","1QQB","y",2.7,3.76,10,0.17,"PD0061",10438625,null,"Glasfeld, A., Koehler, A.N., Schumacher, M.A., Brennan, R.G.","J.Mol.Biol.",291,347,1999,"The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions."]
["1QRV","1QRV","y",2.2000000000000002,2.2400000000000002,71,0.24,"PD0110",10581235,44,"Murphy 4th., F.V., Sweet, R.M., Churchill, M.E.","EMBO J.",18,6610,1999,"The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition."]
["1QSY","1QSY","y",2.2999999999999998,3.07,20,0.24,"PD0065",10449720,44,"Li, Y., Mitaxov, V., Waksman, G.","PNAS",96,9491,1999,"Structure-based design of Taq DNA polymerases with improved properties of dideoxynucleotide incorporation."]
["1QUM","1QUM","y",1.6,2.2200000000000002,29,0.2,"PD0068",10458614,51,"Hosfield, D.J., Guan, Y., Haas, B.J., Cunningham, R.P., Tainer, J.A.","Cell",98,397,1999,"Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis."]
["1QZH","1QZH","y",2.4,3.24,17,0.25,"PD0469",14614509,46,"Lei, M., Podell, E.R., Baumann, P., Cech, T.R.","Nature",426,198,2003,"DNA self-recognition in the structure of Pot1 bound to telomeric single-stranded DNA"]
["1R49","1R49","y",3.1,3.44,51,0.28000000000000003,"PD0477",14594810,57,"Interthal, H., Quigley, P.M., Hol, W.G., Champoux, J.J.","J.Biol.Chem.",279,2984,2004,"The role of lysine 532 in the catalytic mechanism of human topoisomerase I."]
["1R4I","1R4I","y",3.1,3.51,45,0.25,"PD0478",15037741,null,"Shaffer, P.L., Jivan, A., Dollins, D.E., Claessens, F., Gewirth, D.T.","PNAS",101,4758,2004,"Structural basis of androgen receptor binding to selective androgen response elements."]
["1R4R","1R4R","y",3,3.83,18,null,"PD0476",1865905,null,"Luisi, B.F., Xu, W.X., Otwinowski, Z., Freedman, L.P., Yamamoto, K.R., Sigler, P.B.","Nature",352,497,1991,"Crystallographic Analysis of the Interaction of the Glucocorticoid Receptor with DNA"]
["1R71","1R71","y",2.2000000000000002,2.73,34,0.2,"PD0480",15170177,46,"Khare, D., Ziegelin, G., Lanka, E., Heinemann, U.","Nature SMB",11,656,2004,"Sequence-specific DNA binding determined by contacts outside the helix-turn-helix motif of the ParB homolog KorB."]
["1R8D","1R8D","y",2.7,3.03,53,0.23,"PD0482",14985361,74,"Newberry, K.J., Brennan, R.G.","J.Biol.Chem.",279,20356,2004,"The structural mechanism for transcription activation by MerR family member multidrug transporter activation, N terminus."]
["1R8E","1R8E","y",2.4,2.61,60,0.23,"PD0483",14985361,77,"Newberry, K.J., Brennan, R.G.","J.Biol.Chem.",279,20356,2004,"The structural mechanism for transcription activation by MerR family member multidrug transporter activation, N terminus."]
["1RAM","1RAM","y",2.7,3.68,12,0.22,"PDR050",9437432,59,"Chen, Y.Q., Ghosh, S., Ghosh, G.","Nat.Struct.Biol.",5,67,1998,"A novel DNA recognition mode by the NF-kappa B p65 homodimer."]
["1REP","1REP","y",2.6,3.61,11,0.21,"PD0107",10469640,60,"Komori, H., Matsunaga, F., Higuchi, Y., Ishiai, M., Wada, C., Miki, K.","EMBO J.",18,4597,1999,"Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 A resolution."]
["1RH6","1RH6","y",1.7,1.89,65,0.19,"PD0494",15066428,52,"Sam, M.D., Cascio, D., Johnson, R.C., Clubb, R.T.","J.Mol.Biol.",338,229,2004,"Crystal structure of the excisionase-DNA complex from bacteriophage lambda."]
["1RIO","1RIO","y",2.2999999999999998,2.87,33,0.22,"PD0492",14731393,54,"Jain, D., Nickels, B.E., Sun, L., Hochschild, A., Darst, S.A.","Mol.Cell",13,45,2004,"Structure of a ternary transcription activation complex."]
["1RM1","1RM1","y",2.5,2.96,41,0.19,"PD0559",null,57,"Jin, X., Gewirth, D.T., Geiger, J.H.","TBP",null,null,null,"High Resolution Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex"]
["1RPE","1RPE","y",2.5,3.82,4,0.21,"PDR011",8355273,null,"Shimon, L.J., Harrison, S.C.","J.Mol.Biol.",232,826,1993,"The phage 434 OR2/R1-69 complex at 2.5 A resolution."]
["1RR8","1RR8","y",2.6,2.4300000000000002,86,0.28999999999999998,"PD0498",15165849,60,"Chrencik, J.E., Staker, B.L., Burgin, A.B., Pourquier, P., Pommier, Y., Stewart, L., Redinbo, M.R.","J.Mol.Biol.",339,773,2004,"Mechanisms of camptothecin resistance by human topoisomerase I mutations"]
["1RRJ","1RRJ","y",2.2999999999999998,2.39,69,0.28000000000000003,"PD0512",15165849,60,"Chrencik, J.E., Staker, B.L., Burgin, A.B., Pourquier, P., Pommier, Y., Stewart, L., Redinbo, M.R.","J.Mol.Biol.",339,773,2004,"Mechanisms of camptothecin resistance by human topoisomerase I mutations"]
["1RUN","1RUN","y",2.7,3.92,6,0.21,"PDR024",8836098,59,"Parkinson, G., Gunasekera, A., Vojtechovsky, J., Zhang, X., Kunkel, T.A., Berman, H., Ebright, R.H.","Nat.Struct.Biol.",3,837,1996,"Aromatic hydrogen bond in sequence-specific protein DNA recognition."]
["1RV5","1RV5","y",2.1,2.84,20,0.19,"PD0013",9545372,null,"Horton, N.C., Perona, J.J.","J.Mol.Biol.",277,779,1998,"Role of protein-induced bending in the specificity of DNA recognition: crystal structure of EcoRV endonuclease complexed with d(AAAGAT) + d(ATCTT)."]
["1RVA","1RVA","y",2,1.87,82,0.16,"PDE014",7819264,null,"Kostrewa, D., Winkler, F.K.","Biochemistry",34,683,1995,"Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution."]
["1RVB","1RVB","y",2.1,2.13,72,0.17,"PDE015",7819264,null,"Kostrewa, D., Winkler, F.K.","Biochemistry",34,683,1995,"Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution."]
["1RVC","1RVC","y",2.1,1.92,85,0.16,"PDE016",7819264,null,"Kostrewa, D., Winkler, F.K.","Biochemistry",34,683,1995,"Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution."]
["1RYR","1RYR","y",2.2999999999999998,2.67,47,0.25,"PD0504",12904819,55,"Ling, H., Boudsocq, F., Plosky, B., Woodgate, R., Yang, W.","Nature",424,1083,2003,"Replication of a Cis-Syn Thymine Dimer at Atomic Resolution"]
["1RYS","1RYS","y",2,2.29,52,0.22,"PD0505",12904819,56,"Ling, H., Boudsocq, F., Plosky, B., Woodgate, R., Yang, W.","Nature",424,1083,2003,"Replication of a Cis-Syn Thymine Dimer at Atomic Resolution"]
["1RZ9","1RZ9","y",3.1,3.22,66,0.28999999999999998,"PD0506",14967147,59,"Hickman, A.B., Ronning, D.R., Perez, Z.N., Kotin, R.M., Dyda, F.","Mol.Cell",13,403,2004,"The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces."]
["1RZT","1RZT","y",2.1,2.17,69,0.23,"PD0503",14992725,57,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Blanco, L., Kunkel, T.A., Pedersen, L.C.","Mol.Cell",13,561,2004,"A structural solution for the DNA polymerase lambda-dependent repair of DNA gaps with minimal homology."]
["1S0N","1S0N","y",2.8,2.88,73,0.24,"PD0509",15023344,56,"Ling, H., Boudsocq, F., Woodgate, R., Yang, W.","Mol.Cell",13,751,2004,"Snapshots of Replication through an Abasic Lesion; Structural Basis for Base Substitutions and Frameshifts."]
["1S9K","1S9K","y",3.1,3.44,50,0.24,"PD0519",null,68,"Wang, D., Stroud, J.C., Chen, L.","TBP",null,null,null,"Crystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 Site"]
["1SAX","1SAX","y",2.8,3.11,56,0.22,"PD0518",14960592,60,"Garcia-Castellanos, R., Mallorqui-Fernandez, G., Marrero, A., Potempa, J., Coll, M., Gomis-Ruth, F.X.","J.Biol.Chem.",279,17888,2004,"On the transcriptional regulation of methicillin resistance: MecI repressor in complex with its operator"]
["1SEU","1SEU","y",3,2.71,89,0.24,"PD0539",15801827,58,"Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.","J.Med.Chem.",48,2336,2005,"Structures of three classes of anticancer agents bound to the human topoisomerase I-DNA covalent complex"]
["1SFU","1SFU","y",2,2.33,47,0.24,"PD0520",15448208,58,"Ha, S.C., Lokanath, N.K., Van Quyen, D., Wu, C.A., Lowenhaupt, K., Rich, A., Kim, Y.G., Kim, K.K.","PNAS",101,14367,2004,"A poxvirus protein forms a complex with left-handed Z-DNA: crystal structure of a Yatapoxvirus Zalpha bound to DNA."]
["1SKM","1SKM","y",2.2000000000000002,2.1800000000000002,75,0.18,"PD0528",15273274,60,"Horton, J.R., Ratner, G., Banavali, N.K., Huang, N., Choi, Y., Maier, M.A., Marquez, V.E., MacKerell, A.D., Cheng, X.","NAR",32,3877,2004,"Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase"]
["1SKN","1SKN","y",2.5,3.91,3,0.24,"PDT064",9628487,45,"Rupert, P.B., Daughdrill, G.W., Bowerman, B., Matthews, B.W.","Nat.Struct.Biol.",5,484,1998,"A new DNA-binding motif in the Skn-1 binding domain-DNA complex."]
["1SRS","1SRS","y",3.2,2.72,94,0.23,"PDT021",7637780,63,"Pellegrini, L., Tan, S., Richmond, T.J.","Nature",376,490,1995,"Structure of serum response factor core bound to DNA."]
["1SSP","1SSP","y",1.9,1.94,73,0.2,"PD0052",9724657,59,"Parikh, S.S., Mol, C.D., Slupphaug, G., Bharati, S., Krokan, H.E., Tainer, J.A.","EMBO J.",17,5214,1998,"Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA."]
["1SVC","1SVC","y",2.6,3.27,28,0.23,"PDT022",7830764,57,"Muller, C.W., Rey, F.A., Sodeoka, M., Verdine, G.L., Harrison, S.C.","Nature",373,311,1995,"Structure of the NF-kappa B p50 homodimer bound to DNA."]
["1SXP","1SXP","y",2.5,2.83,50,0.21,"PD0533",15178685,55,"Lariviere, L., Morera, S.","J.Biol.Chem.",279,34715,2004,"Structural evidence of a passive base flipping mechanism for {beta}-Glucosyltransferase"]
["1SXQ","1SXQ","y",1.8,1.64,88,0.18,"PD0534",15178685,55,"Lariviere, L., Morera, S.","J.Biol.Chem.",279,34715,2004,"Structural evidence of a passive base flipping mechanism for {beta}-Glucosyltransferase"]
["1T2K","1T2K","y",3,3.77,22,0.26,"PD0540",15510218,73,"Panne, D., Maniatis, T., Harrison, S.C.","EMBO J.",23,4384,2004,"Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-beta enhancer."]
["1T2T","1T2T","y",2.5,3,38,0.24,"PD0538",15361856,50,"Edgell, D.R., Derbyshire, V., Van Roey, P., LaBonne, S., Stanger, M.J., Li, Z., Boyd, T.M., Shub, D.A., Belfort, M.","Nature SMB",11,936,2004,"Intron-encoded homing endonuclease I-TevI also functions as a transcriptional autorepressor."]
["1T3N","1T3N","y",2.2999999999999998,3.74,3,0.27,"PD0543",15254543,null,"Nair, D.T., Johnson, R.E., Prakash, S., Prakash, L., Aggarwal, A.K.","Nature",430,377,2004,"Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing."]
["1T7P","1T7P","y",2.2000000000000002,2.36,62,0.24,"PDE0135",9440688,60,"Doublie, S., Tabor, S., Long, A.M., Richardson, C.C., Ellenberger, T.","Nature",391,251,1998,"Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution."]
["1T8E","1T8E","y",2.5,2.83,51,0.22,"PD0546",15297882,null,"Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.","EMBO J.",23,3452,2004,"Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase."]
["1TAU","1TAU","y",3,3.75,23,0.24,"PDE024",8717047,57,"Eom, S.H., Wang, J., Steitz, T.A.","Nature",382,278,1996,"Structure of Taq ploymerase with DNA at the polymerase active site."]
["1TC3","1TC3","y",2.5,3.25,19,0.23,"PDE0128",9312061,55,"van Pouderoyen, G., Ketting, R.F., Perrakis, A., Plasterk, R.H., Sixma, T.K.","EMBO J.",16,6044,1997,"Crystal structure of the specific DNA-binding domain of Tc3 transposase of C.elegans in complex with transposon DNA."]
["1TDZ","1TDZ","y",1.8,1.5,94,0.18,"PD0551",15249553,63,"Coste, F., Ober, M., Carell, T., Boiteux, S., Zelwer, C., Castaing, B.","J.Biol.Chem.",279,44074,2004,"Structural basis for the recognition of the FapydG lesion (2,6-diamino-4-hydroxy-5-formamidopyrimidine) by formamidopyrimidine-DNA glycosylase"]
["1TEZ","1TEZ","y",1.8,2.12,52,0.21,"PD0552",15576622,49,"Mees, A., Klar, T., Gnau, P., Hennecke, U., Eker, A.P.M., Carell, T., Essen, L.-O.","Science",306,1789,2004,"Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair"]
["1TF6","1TF6","y",3.1,4.46,2,0.31,"PDT065",9501194,70,"Nolte, R.T., Conlin, R.M., Harrison, S.C., Brown, R.S.","PNAS",95,2938,1998,"Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex."]
["1TGH","1TGH","y",2.9,3.68,21,0.21,"PDT024",8757291,55,"Juo, Z.S., Chiu, T.K., Leiberman, P.M., Baikalov, I., Berk, A.J., Dickerson, R.E.","J.Mol.Biol.",261,239,1996,"How proteins recognize the TATA box."]
["1TK0","1TK0","y",2.2999999999999998,2.61,52,0.22,"PD0554",15297882,58,"Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.","EMBO J.",23,3452,2004,"Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase."]
["1TK5","1TK5","y",2.2000000000000002,2.52,49,0.21,"PD0555",15297882,58,"Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.","EMBO J.",23,3452,2004,"Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase."]
["1TL8","1TL8","y",3.1,3.01,80,0.23,"PD0560",16033260,57,"Ioanoviciu, A., Antony, S., Pommier, Y., Staker, B.L., Stewart, L., Cushman, M.","J.Med.Chem.",48,4803,2005,"Synthesis and Mechanism of Action Studies of a Series of Norindenoisoquinoline Topoisomerase I Poisons Reveal an Inhibitor with a Flipped Orientation in the Ternary DNA-Enzyme-Inhibitor Complex As Determined by X-ray Crystallographic Analysis"]
["1TQE","1TQE","y",2.7,3.48,21,0.26,"PD0558",15567413,50,"Han, A., He, J., Wu, Y., Liu, J.O., Chen, L.","J.Mol.Biol.",345,91,2005,"Mechanism of Recruitment of Class II Histone Deacetylases by Myocyte Enhancer Factor-2."]
["1TRO","1TRO","y",1.9,3,6,0.17,"PDR009",3419502,47,"Otwinowski, Z., Schevitz, R.W., Zhang, R.G., Lawson, C.L., Joachimiak, A., Marmorstein, R.Q., Luisi, B.F., Sigler, P.B.","Nature",335,321,1988,"Crystal structure of trp repressor/operator complex at atomic resolution."]
["1TRR","1TRR","y",2.4,3.24,17,0.24,"PDR013",8232559,null,"Lawson, C.L., Carey, J.","Nature",366,178,1993,"Tandem binding in crystals of a trp repressor/operator half-site complex."]
["1TTU","1TTU","y",2.9,3.53,27,0.2,"PD0553",15297877,65,"Kovall, R.A., Hendrickson, W.A.","EMBO J.",23,3441,2004,"Crystal structure of the nuclear effector of Notch signaling, CSL, bound to DNA"]
["1U1K","1U1K","y",2,1.87,82,0.23,"PD0567",15342234,46,"Myers, J.C., Shamoo, Y.","J.Mol.Biol.",342,743,2004,"Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM)."]
["1U1L","1U1L","y",2,2.15,62,0.23,"PD0568",15342234,45,"Myers, J.C., Shamoo, Y.","J.Mol.Biol.",342,743,2004,"Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM)."]
["1U1M","1U1M","y",2,1.77,88,0.24,"PD0569",15342234,45,"Myers, J.C., Shamoo, Y.","J.Mol.Biol.",342,743,2004,"Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM)."]
["1U1N","1U1N","y",2.1,1.96,82,0.21,"PD0570",15342234,46,"Myers, J.C., Shamoo, Y.","J.Mol.Biol.",342,743,2004,"Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM)."]
["1U1O","1U1O","y",2,1.93,79,0.23,"PD0571",15342234,44,"Myers, J.C., Shamoo, Y.","J.Mol.Biol.",342,743,2004,"Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM)."]
["1U1P","1U1P","y",1.9,1.54,94,0.24,"PD0572",15342234,46,"Myers, J.C., Shamoo, Y.","J.Mol.Biol.",342,743,2004,"Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM)."]
["1U1Q","1U1Q","y",1.8,2.19,46,0.21,"PD0573",15342234,44,"Myers, J.C., Shamoo, Y.","J.Mol.Biol.",342,743,2004,"Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM)."]
["1U1R","1U1R","y",1.8,2.5299999999999998,22,0.24,"PD0574",15342234,44,"Myers, J.C., Shamoo, Y.","J.Mol.Biol.",342,743,2004,"Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM)."]
["1U3E","1U3E","y",2.9,2.68,87,0.22,"PD0575",15313606,60,"Shen, B.W., Landthaler, M., Shub, D.A., Stoddard, B.L.","J.Mol.Biol.",342,43,2004,"DNA Binding and Cleavage by the HNH Homing Endonuclease I-HmuI."]
["1U78","1U78","y",2.7,2.89,63,0.24,"PD0576",15304566,77,"Watkins, S., van Pouderoyen, G., Sixma, T.K.","NAR",32,4306,2004,"Structural analysis of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA"]
["1U8B","1U8B","y",2.1,2.75,25,0.24,"PD0584",16209950,50,"He, C., Hus, J.C., Sun, L.J., Zhou, P., Norman, D.P., Dotsch, V., Wei, H., Gross, J.D., Lane, W.S., Wagner, G., Verdine, G.L.","Mol.Cell",20,117,2005,"A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada."]
["1U8R","1U8R","y",2.8,3.16,47,0.23,"PD0578",15351642,60,"Wisedchaisri, G., Holmes, R.K., Hol, W.G.J.","J.Mol.Biol.",342,1155,2004,"Crystal Structure of an IdeR-DNA Complex Reveals a Conformational Change in Activated IdeR for Base-specific Interactions."]
["1UAA","1UAA","y",3,4.3099999999999996,3,0.23,"PDE0129",9288744,70,"Korolev, S., Hsieh, J., Gauss, G.H., Lohman, T.M., Waksman, G.","Cell",90,635,1997,"Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP."]
["1UBD","1UBD","y",2.5,3.81,4,0.21,"PDT038",8942976,null,"Houbaviy, H.B., Usheva, A., Shenk, T., Burley, S.K.","PNAS",93,13577,1996,"Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator."]
["1UUT","1UUT","y",2,1.74,89,0.2,"1UUT",14967147,56,"Hickman, A.B., Ronning, D.R., Perez, Z.N., Kotin, R.M., Dyda, F.","Mol.Cell",13,403,2004,"The Nuclease Domain of Adeno-Associated Virus Rep Coordinates Replication Initiation Using Two Distinct DNA Recognition Interfaces"]
["1V14","1V14","y",2.9,2.87,78,0.22,"1V14",15190054,37,"Mate, M.J., Kleanthous, C.","J.Biol.Chem.",279,34763,2004,"Structure-Based Analysis of the Metal-Dependent Mechanism of H-N-H Endonucleases"]
["1V15","1V15","y",2.4,2.87,39,0.25,"1V15",15190054,36,"Mate, M.J., Kleanthous, C.","J.Biol.Chem.",279,34763,2004,"Structure-Based Analysis of the Metal-Dependent Mechanism of H-N-H Endonucleases"]
["1VAS","1VAS","y",2.8,2.93,64,0.15,"PDE022",8521494,50,"Vassylyev, D.G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E., Morikawa, K.","Cell",83,773,1995,"Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition."]
["1VKX","1VKX","y",2.9,4.1100000000000003,6,0.21,"PDR033",9450761,59,"Chen, F.E., Huang, D.B., Chen, Y.Q., Ghosh, G.","Nature",391,410,1998,"Crystal structure of p50/p65 heterodimer of transcription factor NF-kappaB bound to DNA."]
["1VOL","1VOL","y",2.7,3.72,11,0.22,"PDT032",7675079,null,"Nikolov, D.B., Chen, H., Halay, E.D., Usheva, A.A., Hisatake, K., Lee, D.K., Roeder, R.G., Burley, S.K.","Nature",377,119,1995,"Crystal structure of a TFIIB-TBP-TATA-element ternary complex."]
["1VRL","1VRL","y",2.5,2.8,53,0.23,"PD0634",14961129,48,"Fromme, J.C., Banerjee, A., Huang, S.J., Verdine, G.L.","Nature",427,652,2004,"Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase"]
["1VRR","1VRR","y",2.7,3,55,0.23,"PD0677",15893669,58,"Townson, S.A., Samuelson, J.C., Xu, S.Y., Aggarwal, A.K.","Structure",13,791,2005,"Implications for Switching Restriction Enzyme Specificities from the Structure of BstYI Bound to a BglII DNA Sequence."]
["1W0T","1W0T","y",2,2.21,57,0.25,"1W0T",15608617,62,"Court, R.I., Chapman, L.M., Fairall, L., Rhodes, D.","Embo Rep.",6,39,2005,"How the Human Telomeric Proteins Trf1 and Trf2 Recognize Telomeric DNA: A View from High-Resolution Crystal Structures"]
["1W0U","1W0U","y",1.8,2.04,60,0.22,"1W0U",15608617,46,"Court, R.I., Chapman, L.M., Fairall, L., Rhodes, D.","Embo Rep.",6,39,2005,"How the Human Telomeric Proteins Trf1 and Trf2 Recognize Telomeric DNA: A View from High-Resolution Crystal Structures"]
["1W36","1W36","y",3.1,4.03,13,0.24,"1W36",15538360,null,"Singleton, M.R., Dillingham, M.S., Gaudier, M., Kowalczykowski, S.C., Wigley, D.B.","Nature",432,187,2004,"Crystal Structure of Recbcd Enzyme Reveals a Machine for Processing DNA Breaks"]
["1W7A","1W7A","y",2.2999999999999998,2.41,67,0.22,"1W7A",15297450,0,"Lamers, M.H., Georgijevic, D., Lebbink, J., Winterwerp, H.H.K., Agianian, B., De Wind, N., Sixma, T.K.","J.Biol.Chem.",279,43879,2004,"ATP Increases the Affinity between Muts ATPase Domains: Implications for ATP Hydrolysis and Conformational Changes"]
["1WD0","1WD0","y",1.9,3.12,4,0.22,"PD0544",15272160,30,"Ko, T.P., Chu, H.M., Chen, C.Y., Chou, C.C., Wang, A.H.","Acta Cr. D",60,1381,2004,"Structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers."]
["1WD1","1WD1","y",2.2000000000000002,3.28,8,0.25,"PD0545",15272160,30,"Ko, T.P., Chu, H.M., Chen, C.Y., Chou, C.C., Wang, A.H.","Acta Cr. D",60,1381,2004,"Structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers."]
["1WTE","1WTE","y",1.9,1.91,75,0.17,"PD0608",15590682,56,"Hashimoto, H., Shimizu, T., Imasaki, T., Kato, M., Shichijo, N., Kita, K., Sato, M.","J.Biol.Chem.",280,5605,2005,"Crystal structures of type II restriction endonuclease EcoO109I and its complex with cognate DNA"]
["1WTQ","1WTQ","y",1.7,2.83,6,0.18,"PD0611",15653643,40,"Chen, C.-Y., Ko, T.-P., Lin, T.-W., Chou, C.-C., Chen, C.-J., Wang, A.H.-J.","NAR",33,430,2005,"Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d"]
["1WTV","1WTV","y",1.6,2.4300000000000002,18,0.21,"PD0613",15653643,53,"Chen, C.-Y., Ko, T.-P., Lin, T.-W., Chou, C.-C., Chen, C.-J., Wang, A.H.-J.","NAR",33,430,2005,"Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d"]
["1WTX","1WTX","y",2.2000000000000002,2.4700000000000002,53,0.23,"PD0615",15653643,56,"Chen, C.-Y., Ko, T.-P., Lin, T.-W., Chou, C.-C., Chen, C.-J., Wang, A.H.-J.","NAR",33,430,2005,"Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d"]
["1X9N","1X9N","y",3,3.94,13,0.24,"PD0587",15565146,69,"Pascal, J.M., O'Brien, P.J., Tomkinson, A.E., Ellenberger, T.","Nature",432,473,2004,"Human DNA ligase I completely encircles and partially unwinds nicked DNA."]
["1XBR","1XBR","y",2.5,2.69,62,0.22,"PDT045",9349824,52,"Muller, C.W., Herrmann, B.G.","Nature",389,884,1997,"Crystallographic structure of the T domain-DNA complex of the Brachyury transcription factor."]
["1XC9","1XC9","y",1.9,2.21,50,0.22,"PD0593",15548515,56,"Hsu, G.W., Huang, X., Luneva, N.P., Geacintov, N.E., Beese, L.S.","J.Biol.Chem.",280,3764,2005,"Structure of a High Fidelity DNA Polymerase Bound to a Benzo[a]pyrene Adduct That Blocks Replication"]
["1XJV","1XJV","y",1.7,2.72,9,0.23,"PD0597",15558049,49,"Lei, M., Podell, E.R., Cech, T.R.","Nature SMB",11,1223,2004,"Structure of human POT1 bound to telomeric single-stranded DNA provides a model for chromosome end-protection"]
["1XPX","1XPX","y",2.8,3.34,37,0.22,"PD0602",15837198,44,"Yousef, M.S., Matthews, B.W.","STRUCTURE",13,601,2005,"Structural Basis of Prospero-DNA Interaction: Implications for Transcription Regulationin Developing Cells."]
["1XSD","1XSD","y",2.7,3.46,22,0.24,"PD0598",15716455,72,"Safo, M.K., Zhao, Q., Ko, T.-P., Musayev, F.N., Robinson, H., Scarsdale, N., Wang, A.H.-J., Archer, G.L.","J.Bacteriol.",187,1833,2005,"Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons"]
["1XSP","1XSP","y",2.2000000000000002,1.84,92,0.21,"PD0606",15608652,54,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Kunkel, T.A., Pedersen, L.C.","Nature SMB",12,97,2005,"A closed conformation for the Pol lambda catalytic cycle."]
["1Y6F","1Y6F","y",2.4,3.04,27,0.2,"PD0616",16081100,51,"Lariviere, L., Sommer, N., Morera, S.","J.Mol.Biol.",352,139,2005,"Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase."]
["1Y8Z","1Y8Z","y",1.9,2.2200000000000002,49,0.21,"PD0618",16081100,42,"Lariviere, L., Sommer, N., Morera, S.","J.Mol.Biol.",352,139,2005,"Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase."]
["1YF3","1YF3","y",2.2999999999999998,2.5499999999999998,57,0.22,"PD0622",15882618,49,"Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.","Cell",121,349,2005,"Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase."]
["1YFH","1YFH","y",3,3.09,69,0.25,"PD0625",15964013,66,"Duguid, E.M., Rice, P.A., He, C.","J.Mol.Biol.",350,657,2005,"The structure of the human AGT protein bound to DNA and its implications for damage detection."]
["1YFJ","1YFJ","y",2.7,2.89,63,0.21,"PD0623",15882618,65,"Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.","Cell",121,349,2005,"Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase."]
["1YFL","1YFL","y",3.1,3.53,43,0.22,"PD0624",15882618,64,"Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.","Cell",121,349,2005,"Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase."]
["1YNW","1YNW","y",3,3.73,24,0.23,"PD0626",15225774,70,"Shaffer, P.L., Gewirth, D.T.","J.Steroid Biochem.Mol.Biol.","89-90",215,2004,"Structural analysis of RXR-VDR interactions on DR3 DNA"]
["1YO5","1YO5","y",2,1.78,87,0.21,"PD0627",15882048,47,"Wang, Y., Feng, L., Said, M., Balderman, S., Fayazi, Z., Liu, Y., Ghosh, D., Gulick, A.M.","Biochemistry",44,7095,2005,"Analysis of the 2.0 A Crystal Structure of the Protein-DNA Complex of the Human PDEF Ets Domain Bound to the Prostate Specific Antigen Regulatory Site"]
["1YQR","1YQR","y",2.4,2.42,75,0.22,"PD0632",15800616,null,"Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.","Nature",434,612,2005,"Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA."]
["1YRN","1YRN","y",2.5,3.12,29,0.23,"PDT028",7569974,null,"Li, T., Stark, M.R., Johnson, A.D., Wolberger, C.","Science",270,262,1995,"Crystal structure of the MATa1/MAT alpha 2 homeodomain heterodimer bound to DNA."]
["1YSA","1YSA","y",2.9,3.39,40,0.23,"PDT002",1473154,49,"Ellenberger, T.E., Brandl, C.J., Struhl, K., Harrison, S.C.","Cell",71,1223,1992,"The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex."]
["1YTB","1YTB","y",1.8,2.15,50,0.2,"PDT012",8413604,60,"Kim, Y., Geiger, J.H., Hahn, S., Sigler, P.B.","Nature",365,512,1993,"Crystal structure of a yeast TBP/TATA-box complex."]
["1Z19","1Z19","y",2.8,2.75,81,0.22,"PD0635",15973401,57,"Biswas, T., Aihara, H., Radman-Livaja, M., Filman, D., Landy, A., Ellenberger, T.","Nature",435,1059,2005,"A structural basis for allosteric control of DNA recombination by lambda integrase."]
["1Z63","1Z63","y",3,3.55,35,0.23,"PD0638",15882619,50,"Durr, H., Korner, C., Muller, M., Hickmann, V., Hopfner, K.P.","Cell",121,363,2005,"X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA."]
["1Z9C","1Z9C","y",2.6,3.23,31,0.22,"PD0644",16209951,45,"Hong, M., Fuangthong, M., Helmann, J.D., Brennan, R.G.","Mol.Cell",20,131,2005,"Structure of an OhrR-ohrA Operator Complex Reveals the DNA Binding Mechanism of the MarR Family."]
["1ZAA","1ZAA","y",2.1,2.79,22,0.18,"PDT006",2028256,48,"Pavletich, N.P., Pabo, C.O.","Science",252,809,1991,"Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A."]
["1ZAY","1ZAY","y",2.7,3.84,8,0.18,"PD0109",null,null,"Zheleznova, E.E., Brennan, R.G.","TBP",null,null,null,"The Roles of Exocyclic Groups in the Central Base-Pair Step in Modulating the Affinity of PurR for its Operator"]
["1ZET","1ZET","y",2.2999999999999998,3.5,6,0.26,"PD0647",16163299,null,"Wang, J.","Nature",437,"E6",2005,"DNA polymerases: Hoogsteen base-pairing in DNA replication?"]
["1ZG1","1ZG1","y",2.2999999999999998,2.5499999999999998,57,0.26,"PD0645",16262254,54,"Maris, A.E., Kaczor-Grzeskowiak, M., Ma, Z., Kopka, M.L., Gunsalus, R.P., Dickerson, R.E.","Biochemistry",44,14538,2005,"Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator."]
["1ZG5","1ZG5","y",2.2999999999999998,2.39,69,0.22,"PD0646",16262254,54,"Maris, A.E., Kaczor-Grzeskowiak, M., Ma, Z., Kopka, M.L., Gunsalus, R.P., Dickerson, R.E.","Biochemistry",44,14538,2005,"Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator."]
["1ZLK","1ZLK","y",3.1,3.28,62,0.27,"PD0651",16246368,59,"Wisedchaisri, G., Wu, M., Rice, A.E., Roberts, D.M., Sherman, D.R., Hol, W.G.J.","J.Mol.Biol.",354,630,2005,"Structures of Mycobacterium tuberculosis DosR and DosR-DNA complex involved in gene activation during adaptation to hypoxic latency."]
["1ZME","1ZME","y",2.5,3.13,29,0.21,"PDT044",9303004,60,"Swaminathan, K., Flynn, P., Reece, R.J., Marmorstein, R.","Nat.Struct.Biol.",4,751,1997,"Crystal structure of a PUT3-DNA complex reveals a novel mechanism for DNA recognition by a protein containing a Zn2Cys6 binuclear cluster."]
["1ZNS","1ZNS","y",2.5,3.04,35,0.24,"PD0657",16434744,46,"Doudeva, L.G., Huang, H., Hsia, K.C., Shi, Z., Li, C.L., Shen, Y., Cheng, Y.S., Yuan, H.S.","Protein Sci.",15,269,2006,"Crystal structural analysis and metal-dependent stability and activity studies of the ColE7 endonuclease domain in complex with DNA/Zn2+ or inhibitor/Ni2+"]
["1ZRC","1ZRC","y",2.8,3.39,34,0.28999999999999998,"PD0670",16427082,61,"Napoli, A.A., Lawson, C.L., Ebright, R.H., Berman, H.M.","J.Mol.Biol.",357,173,2006,"Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps."]
["1ZRD","1ZRD","y",2.8,3.21,48,0.28000000000000003,"PD0671",16427082,60,"Napoli, A.A., Lawson, C.L., Ebright, R.H., Berman, H.M.","J.Mol.Biol.",357,173,2006,"Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps."]
["1ZRE","1ZRE","y",2.8,3.11,56,0.28999999999999998,"PD0672",16427082,60,"Napoli, A.A., Lawson, C.L., Ebright, R.H., Berman, H.M.","J.Mol.Biol.",357,173,2006,"Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps."]
["1ZRF","1ZRF","y",2.1,1.84,89,0.24,"PD0673",16427082,55,"Napoli, A.A., Lawson, C.L., Ebright, R.H., Berman, H.M.","J.Mol.Biol.",357,173,2006,"Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps."]
["1ZS4","1ZS4","y",1.7,2.14,43,0.21,"PD0687",16039594,47,"Jain, D., Kim, Y., Maxwell, K.L., Beasley, S., Zhang, R., Gussin, G.N., Edwards, A.M., Darst, S.A.","Mol.Cell",19,259,2005,"Crystal Structure of Bacteriophage lambdacII and Its DNA Complex."]
["1ZTG","1ZTG","y",3,3.47,40,0.24,"PD0675",null,56,"Sidiqi, M., Wilce, J.A., Barker, A., Schmidgerger, J., Leedman, P.J., Wilce, M.C.J.","TBP",null,null,null,"Human alpha polyC binding protein KH1"]
["1ZX4","1ZX4","y",3,3.98,11,0.25,"PD0685",16306995,67,"Schumacher, M.A., Funnell, B.E.","Nature",438,516,2005,"Structures of ParB bound to DNA reveal mechanism of partition complex formation."]
["1ZYQ","1ZYQ","y",2.7,2.89,63,0.22,"PD0686",16271888,57,"Brieba, L.G., Kokoska, R.J., Bebenek, K., Kunkel, T.A., Ellenberger, T.","Structure",13,1653,2005,"A lysine residue in the fingers subdomain of t7 DNA polymerase modulates the miscoding potential of 8-oxo-7,8-dihydroguanosine."]
["1ZZI","1ZZI","y",1.8,1.74,82,0.2,"PD0680",16004877,37,"Backe, P.H., Messias, A.C., Ravelli, R.B., Sattler, M., Cusack, S.","STRUCTURE",13,1055,2005,"X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids"]
["1ZZJ","1ZZJ","y",2.2999999999999998,2.62,51,0.21,"PD0681",16004877,39,"Backe, P.H., Messias, A.C., Ravelli, R.B., Sattler, M., Cusack, S.","STRUCTURE",13,1055,2005,"X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids"]
["2A0I","2A0I","y",2.7,3.73,12,0.22,"PD0688",16216584,46,"Larkin, C., Datta, S., Harley, M.J., Anderson, B.J., Ebie, A., Hargreaves, V., Schildbach, J.F.","Structure",13,1533,2005,"Inter- and intramolecular determinants of the specificity of single-stranded DNA binding and cleavage by the f factor relaxase."]
["2A3V","2A3V","y",2.8,3.37,35,0.24,"PD0690",16641988,63,"MacDonald, D., Demarre, G., Bouvier, M., Mazel, D., Gopaul, D.N.","Nature",440,1157,2006,"Structural basis for broad DNA-specificity in integron recombination."]
["2A66","2A66","y",2.2000000000000002,2.42,57,0.2,"PD0691",16289203,63,"Solomon, I.H., Hager, J.M., Safi, R., McDonnell, D.P., Redinbo, M.R., Ortlund, E.A.","J.Mol.Biol.",354,1091,2005,"Crystal Structure of the Human LRH-1 DBD-DNA Complex Reveals Ftz-F1 Domain Positioning is Required for Receptor Activity."]
["2A6O","2A6O","y",2.6,2.91,54,0.21,"PD0695",16209952,49,"Ronning, D.R., Guynet, C., Ton-Hoang, B., Perez, Z.N., Ghirlando, R., Chandler, M., Dyda, F.","Mol.Cell",20,143,2005,"Active site sharing and subterminal hairpin recognition in a new class of DNA transposases."]
["2ACJ","2ACJ","y",2.6,2.85,58,0.24,"PD0693",16237447,57,"Ha, S.C., Lowenhaupt, K., Rich, A., Kim, Y.G., Kim, K.K.","Nature",437,1183,2005,"Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases."]
["2AGQ","2AGQ","y",2.1,2.3199999999999998,57,0.23,"PD0699",16107880,55,"Vaisman, A., Ling, H., Woodgate, R., Yang, W.","EMBO J.",24,2957,2005,"Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis."]
["2AJQ","2AJQ","y",2.6,3.08,41,0.23,"PD0702",null,61,"Brieba, L., Ellenberger, T.","TBP",null,null,null,"Structure of replicative DNA polymerase provides insigts into the mechanisms for processivity, frameshifting and editing"]
["2ALZ","2ALZ","y",2.5,3.41,14,0.23,"PD0700",16216587,54,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Structure",13,1569,2005,"Human DNA Polymerase iota Incorporates dCTP Opposite Template G via a G.C+ Hoogsteen Base Pair."]
["2AOQ","2AOQ","y",2.2000000000000002,2.35,63,0.2,"PD0703",16209953,54,"Lee, J.Y., Chang, J., Joseph, N., Ghirlando, R., Rao, D.N., Yang, W.","Mol.Cell",20,155,2005,"MutH complexed with hemi- and unmethylated DNAs: coupling base recognition and DNA cleavage."]
["2AOR","2AOR","y",2,2.3199999999999998,48,0.2,"PD0704",16209953,51,"Lee, J.Y., Chang, J., Joseph, N., Ghirlando, R., Rao, D.N., Yang, W.","Mol.Cell",20,155,2005,"MutH complexed with hemi- and unmethylated DNAs: coupling base recognition and DNA cleavage."]
["2AQ4","2AQ4","y",2.2999999999999998,2.91,30,0.2,"PD0706",16195463,71,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Science",309,2219,2005,"Rev1 employs a novel mechanism of DNA synthesis using a protein template."]
["2ASL","2ASL","y",2.7,2.38,89,0.24,"PD0710",16379496,61,"Rechkoblit, O., Malinina, L., Cheng, Y., Kuryavyi, V., Broyde, S., Geacintov, N.E., Patel, D.J.","Plos Biol.",4,1,2006,"Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion"]
["2ATA","2ATA","y",2.2000000000000002,2.06,83,0.15,"PD0705",16793544,48,"Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shaulov, L., Haran, T.E., Shakked, Z.","Mol.Cell",22,741,2006,"Structural Basis of DNA Recognition by p53 Tetramers"]
["2AXY","2AXY","y",1.7,1.81,72,0.22,"PD0715",16186123,42,"Du, Z., Lee, J.K., Tjhen, R., Li, S., Pan, H., Stroud, R.M., James, T.L.","J.Biol.Chem.",280,38823,2005,"Crystal Structure of the First KH Domain of Human Poly(C)-binding Protein-2 in Complex with a C-rich Strand of Human Telomeric DNA at 1.7 A"]
["2AYB","2AYB","y",3.2,3.41,57,0.26,"PD0716",16914454,53,"Hooley, E., Fairweather, V., Clarke, A.R., Gaston, K., Brady, R.L.","NAR",34,3897,2006,"The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein."]
["2AYG","2AYG","y",3.1,3.77,27,0.25,"PD0717",16914454,54,"Hooley, E., Fairweather, V., Clarke, A.R., Gaston, K., Brady, R.L.","NAR",34,3897,2006,"The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein."]
["2B0D","2B0D","y",2,2.84,14,0.22,"PD0713",16236314,40,"Hiller, D.A., Rodriguez, A.M., Perona, J.J.","J.Mol.Biol.",354,121,2005,"Non-cognate Enzyme-DNA Complex: Structural and Kinetic Analysis of EcoRV Endonuclease Bound to the EcoRI Recognition Site GAATTC"]
["2B0E","2B0E","y",1.9,2.93,8,0.23,"PD0714",16236314,37,"Hiller, D.A., Rodriguez, A.M., Perona, J.J.","J.Mol.Biol.",354,121,2005,"Non-cognate Enzyme-DNA Complex: Structural and Kinetic Analysis of EcoRV Endonuclease Bound to the EcoRI Recognition Site GAATTC"]
["2B9S","2B9S","y",2.2999999999999998,1.84,95,0.23,"PD0719",16487540,64,"Davies, D.R., Mushtaq, A., Interthal, H., Champoux, J.J., Hol, W.G.","J.Mol.Biol.",357,1202,2006,"The Structure of the Transition State of the Heterodimeric Topoisomerase I of Leishmania donovani as a Vanadate Complex with Nicked DNA."]
["2BCV","2BCV","y",2,1.78,87,0.2,"PD0725",16439207,56,"Garcia-Diaz, M., Bebenek, K., Krahn, J.M., Pedersen, L.C., Kunkel, T.A.","Cell",124,331,2006,"Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase"]
["2BGW","2BGW","y",2.8,3.09,57,0.23,"2BGW",15719018,75,"Newman, M., Murray-Rust, J., Lally, J., Rudolf, J., Fadden, A., Knowles, P.P., White, M.F., Mcdonald, N.Q.","EMBO J.",24,895,2005,"Structure of an Xpf Endonuclease with and without DNA Suggests a Model for Substrate Recognition"]
["2BNW","2BNW","y",2.5,2.19,88,0.23,"2BNW",16528102,69,"Weihofen, W.A., Cicek, A., Pratto, F., Alonso, J.C., Saenger, W.","NAR",34,1450,2006,"Structures of Omega Repressors Bound to Direct and Inverted DNA Repeats Explain Modulation of Transcription."]
["2BNZ","2BNZ","y",2.6,2.67,72,0.23,"2BNZ",16528102,66,"Weihofen, W.A., Cicek, A., Pratto, F., Alonso, J.C., Saenger, W.","NAR",34,1450,2006,"Structures of Omega Repressors Bound to Direct and Inverted DNA Repeats Explain Modulation of Transcription."]
["2BOP","2BOP","y",1.7,2.31,29,0.2,"PDV001",1328886,44,"Hegde, R.S., Grossman, S.R., Laimins, L.A., Sigler, P.B.","Nature",359,505,1992,"Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target."]
["2BPF","2BPF","y",2.9,4.0199999999999996,8,0.19,"PDE011",7516580,65,"Pelletier, H., Sawaya, M.R., Kumar, A., Wilson, S.H., Kraut, J.","Science",264,1891,1994,"Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP."]
["2BZF","2BZF","y",2.9,3.07,65,0.24,"2BZF",16155580,72,"Bradley, C.M., Ronning, D.R., Ghirlando, R., Craigie, R., Dyda, F.","Nature SMB",12,935,2005,"Structural Basis for DNA Bridging by Barrier-to-Autointegration Factor."]
["2C22","2C22","y",2.6,2.99,47,0.23,"2C22",16306039,52,"Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., Guengerich, F.P.","J.Biol.Chem.",281,2358,2006,"Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4"]
["2C28","2C28","y",2.2999999999999998,2.77,39,0.24,"2C28",16306039,51,"Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., P Guengerich, F.","J.Biol.Chem.",281,2358,2006,"Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4"]
["2C2D","2C2D","y",2.6,3.5,15,0.24,"2C2D",16306039,54,"Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., P Guengerich, F.","J.Biol.Chem.",281,2358,2006,"Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4"]
["2C2E","2C2E","y",2.6,3.64,11,0.27,"2C2E",16306039,52,"Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., P Guengerich, F.","J.Biol.Chem.",281,2358,2006,"Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4"]
["2C2R","2C2R","y",2.6,3.49,14,0.25,"2C2R",16306039,51,"Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., Guengerich, F.P.","J.Biol.Chem.",281,2358,2006,"Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4"]
["2C5R","2C5R","y",2.9,3.45,35,0.25,"2C5R",16275651,null,"Albert, A., Munoz-Espin, D., Jimenez, M., Asensio, J.L., Hermoso, J.A., Salas, M., Meijer, W.J.J.","J.Biol.Chem.",280,42486,2005,"Structural Basis for Membrane Anchorage of Viral Phi 29 DNA During Replication."]
["2C62","2C62","y",1.7,2.04,53,0.23,"2C62",16415882,63,"Werten, S., Moras, D.","Nature SMB",13,181,2006,"A Global Transcription Cofactor Bound to Juxtaposed Strands of Unwound DNA"]
["2C6Y","2C6Y","y",2.4,3.47,9,0.23,"2C6Y",16624804,null,"Tsai, K.-L., Huang, C.-Y., Chang, C.-H., Sun, Y.-J., Chuang, W.-J., Hsiao, C.-D.","J.Biol.Chem.",281,17400,2006,"Crystal Structure of the Human Foxk1A-DNA Complex and its Implications on the Diverse Binding Specificity of Winged Helix/Forkhead Proteins."]
["2C7A","2C7A","y",2.5,2.72,60,0.2,"2C7A",16931575,71,"Roemer, S.C., Donham, D.C., Sherman, L., Pon, V.H., Edwards, D.P., Churchill, M.E.A.","Mol.Endocrinol.",20,3042,2006,"Structure of the Progesterone Receptor-Deoxyribonucleic Acid Complex: Novel Interactions Required for Binding to Half-Site Response Elements."]
["2C7O","2C7O","y",1.9,1.86,78,0.19,"2C7O",16340006,55,"Neely, R.K., Daujotyte, D., Grazulis, S., Magennis, S.W., Dryden, D.T.F., Klimasauskas, S., Jones, A.C.","NAR",33,6953,2005,"Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes."]
["2C7P","2C7P","y",1.7,1.65,83,0.2,"2C7P",16340006,55,"Neely, R.K., Daujotyte, D., Grazulis, S., Magennis, S.W., Dryden, D.T.F., Klimasauskas, S., Jones, A.C.","NAR",33,6953,2005,"Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes."]
["2C7Q","2C7Q","y",1.9,2.17,52,0.19,"2C7Q",16340006,54,"Neely, R.K., Daujotyte, D., Grazulis, S., Magennis, S.W., Dryden, D.T.F., Klimasauskas, S., Jones, A.C.","NAR",33,6953,2005,"Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes"]
["2C7R","2C7R","y",1.9,2.0499999999999998,65,0.2,"2C7R",16340006,57,"Neely, R.K., Daujotyte, D., Grazulis, S., Magennis, S.W., Dryden, D.T.F., Klimasauskas, S., Jones, A.C.","NAR",33,6953,2005,"Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes."]
["2C9L","2C9L","y",2.2999999999999998,2.3199999999999998,68,0.23,"2C9L",16483937,45,"Petosa, C., Morand, P., Baudin, F., Moulin, M., Artero, J.B., Muller, C.W.","Mol.Cell",21,565,2006,"Structural Basis of Lytic Cycle Activation by the Epstein-Barr Virus Zebra Protein"]
["2C9N","2C9N","y",3.3,2.2400000000000002,99,0.37,"2C9N",16483937,45,"Petosa, C., Morand, P., Baudin, F., Moulin, M., Artero, J.B., Muller, C.W.","Mol.Cell",21,565,2006,"Structural Basis of Lytic Cycle Activation by the Epstein-Barr Virus Zebra Protein"]
["2CAX","2CAX","y",2.9,2.62,89,0.21,"2CAX",16528102,69,"Weihofen, W.A., Cicek, A., Pratto, F., Alonso, J.C., Saenger, W.","NAR",34,1450,2006,"Structures of Omega Repressors Bound to Direct and Inverted DNA Repeats Explain Modulation of Transcription."]
["2CCZ","2CCZ","y",2.7,4.08,3,0.25,"2CCZ",16899446,31,"Huang, C.-Y., Hsu, C.-H., Sun, Y.-J., Wu, H.-N., Hsiao, C.-D.","NAR",34,3878,2006,"Complexed Crystal Structure of Replication Restart Primsome Protein Prib Reveals a Novel Single-Stranded DNA-Binding Mode."]
["2CDM","2CDM","y",2.7,2.71,75,0.21,"2CDM",16540117,52,"Boer, R., Russi, S., Guasch, A., Lucas, M., Blanco, A.G., Perez-Luque, R., Coll, M., De La Cruz, F.","J.Mol.Biol.",358,857,2006,"Unveiling the Molecular Mechanism of a Conjugative Relaxase: The Structure of Trwc Complexed with a 27-mer DNA Comprising the Recognition Hairpin and the Cleavage Site."]
["2CGP","2CGP","y",2.2000000000000002,2.56,46,0.24,"PDT049",9096308,60,"Passner, J.M., Steitz, T.A.","PNAS",94,2843,1997,"The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer."]
["2CRX","2CRX","y",2.5,3.67,6,0.2,"PD0103",9670032,50,"Gopaul, D.N., Guo, F., Van Duyne, G.D.","EMBO J.",17,4175,1998,"Structure of the Holliday junction intermediate in Cre-loxP site-specific recombination."]
["2D5V","2D5V","y",2,2.89,12,0.25,"PD0739",17223534,53,"Iyaguchi, D., Yao, M., Watanabe, N., Nishihira, J., Tanaka, I.","Structure",15,75,2007,"DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6"]
["2DGC","2DGC","y",2.2000000000000002,2.2400000000000002,71,0.21,"PDT029",7500340,56,"Keller, W., Konig, P., Richmond, T.J.","J.Mol.Biol.",254,657,1995,"Crystal structure of a bZIP/DNA complex at 2.2 A: determinants of DNA specific recognition."]
["2DNJ","2DNJ","y",2,1.98,75,0.17,"PDE006",1748997,51,"Lahm, A., Suck, D.","J.Mol.Biol.",222,645,1991,"DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex"]
["2DPU","2DPU","y",3.1,3.56,41,0.21,"PD0809",null,51,"Vivian, J.P., Wilce, J., Wilce, M.C.J.","TBP",null,null,null,"Crystal structure of the replication termination protein in complex with a pseudosymmetric 21mer B-site DNA"]
["2DRP","2DRP","y",2.8,2.89,72,0.19,"PDT011",8247159,57,"Fairall, L., Schwabe, J.W., Chapman, L., Finch, J.T., Rhodes, D.","Nature",366,483,1993,"The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition."]
["2DY4","2DY4","y",2.7,3.27,31,0.23,"PD0864",17210917,58,"Aller, P., Rould, M.A., Hogg, M., Wallace, S.S., Doublie, S.","PNAS",104,814,2007,"A structural rationale for stalling of a replicative DNA polymerase at the most common oxidative thymine lesion, thymine glycol."]
["2E1C","2E1C","y",2.1,1.5,98,0.21,"PD0889",18073105,57,"Yokoyama, K., Ishijima, S.A., Koike, H., Kurihara, C., Shimowasa, A., Kabasawa, M., Kawashima, T., Suzuki, M.","Structure",15,1542,2007,"Feast/Famine Regulation by Transcription Factor FL11 for the Survival of the Hyperthermophilic Archaeon Pyrococcus OT3."]
["2EA0","2EA0","y",1.4,1.87,48,0.16,"PD0968",null,62,"Golan, G., Zharkov, D.O., Grollman, A.P., Shoham, G.","TBP",null,null,null,"Active site plasticity of endonuclease VIII: Conformational changes compensating for different substrate and mutations of critical residues"]
["2EFW","2EFW","y",2.5,3.92,3,0.28999999999999998,"PD0975",17521668,59,"Vivian, J.P., Porter, C.J., Wilce, J.A., Wilce, M.C.J.","J.Mol.Biol.",370,481,2007,"An asymmetric structure of the Bacillus subtilis replication terminator protein in complex with DNA"]
["2ER8","2ER8","y",2.9,3.27,45,0.24,"PD0740",16615914,66,"Fitzgerald, M.X., Rojas, J.R., Kim, J.M., Kohlhaw, G.B., Marmorstein, R.","Structure",14,725,2006,"Structure of a Leu3-DNA complex: recognition of everted CGG half-sites by a Zn2Cys6 binuclear cluster protein."]
["2ERE","2ERE","y",3,3.76,22,0.28000000000000003,"PD0741",16615914,58,"Fitzgerald, M.X., Rojas, J.R., Kim, J.M., Kohlhaw, G.B., Marmorstein, R.","Structure",14,725,2006,"Structure of a Leu3-DNA complex: recognition of everted CGG half-sites by a Zn2Cys6 binuclear cluster protein."]
["2ERG","2ERG","y",3.2,4,16,0.27,"PD0742",16615914,58,"Fitzgerald, M.X., Rojas, J.R., Kim, J.M., Kohlhaw, G.B., Marmorstein, R.","Structure",14,725,2006,"Structure of a Leu3-DNA complex: recognition of everted CGG half-sites by a Zn2Cys6 binuclear cluster protein."]
["2ES2","2ES2","y",1.8,1,100,0.19,"PD0726",16780871,57,"Max, K.E., Zeeb, M., Bienert, R., Balbach, J., Heinemann, U.","J.Mol.Biol.",360,702,2006,"T-rich DNA single strands bind to a preformed site on the bacterial cold shock protein Bs-CspB."]
["2ETW","2ETW","y",1.7,1.54,89,0.18,"PD0727",16531239,47,"Lamoureux, J.S., Glover, J.N.","Structure",14,555,2006,"Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes."]
["2EUV","2EUV","y",1.9,1.72,87,0.2,"PD0728",16531239,46,"Lamoureux, J.S., Glover, J.N.","Structure",14,555,2006,"Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes."]
["2EUW","2EUW","y",1.7,1.43,94,0.18,"PD0729",16531239,46,"Lamoureux, J.S., Glover, J.N.","Structure",14,555,2006,"Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes."]
["2EUX","2EUX","y",1.6,1.37,94,0.17,"PD0730",16531239,47,"Lamoureux, J.S., Glover, J.N.","Structure",14,555,2006,"Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes."]
["2EUZ","2EUZ","y",1.6,1.3,96,0.18,"PD0731",16531239,47,"Lamoureux, J.S., Glover, J.N.","Structure",14,555,2006,"Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes."]
["2EVF","2EVF","y",1.6,1.2,98,0.17,"PD0732",16531239,47,"Lamoureux, J.S., Glover, J.N.","Structure",14,555,2006,"Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes."]
["2EVG","2EVG","y",1.6,1.39,93,0.17,"PD0733",16531239,47,"Lamoureux, J.S., Glover, J.N.","Structure",14,555,2006,"Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes."]
["2EVH","2EVH","y",2,1.76,88,0.18,"PD0734",16531239,46,"Lamoureux, J.S., Glover, J.N.","Structure",14,555,2006,"Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes."]
["2EVI","2EVI","y",1.8,1.6,90,0.17,"PD0735",16531239,46,"Lamoureux, J.S., Glover, J.N.","Structure",14,555,2006,"Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes."]
["2EVJ","2EVJ","y",1.9,1.71,87,0.17,"PD0736",16531239,46,"Lamoureux, J.S., Glover, J.N.","Structure",14,555,2006,"Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes."]
["2EX5","2EX5","y",2.2000000000000002,3.24,9,0.22,"PD0738",16698548,47,"Spiegel, P.C., Chevalier, B., Sussman, D., Turmel, M., Lemieux, C., Stoddard, B.L.","Structure",14,869,2006,"The structure of I-CeuI homing endonuclease: Evolving asymmetric DNA recognition from a symmetric protein scaffold."]
["2F55","2F55","y",3.3,4,24,0.25,"PD0745",16306038,67,"Mackintosh, S.G., Lu, J.Z., Jordan, J.B., Harrison, M.K., Sikora, B., Sharma, S.D., Cameron, C.E., Raney, K.D., Sakon, J.","J.Biol.Chem.",281,3528,2006,"Structural and biological identification of residues on the surface of NS3 helicase required for optimal replication of the hepatitis C virus"]
["2F5O","2F5O","y",2.1,2.4500000000000002,42,0.2,"PD0750",16497933,55,"Banerjee, A., Santos, W.L., Verdine, G.L.","Science",311,1153,2006,"Structure of a DNA glycosylase searching for lesions."]
["2F5P","2F5P","y",2,2.0499999999999998,70,0.21,"PD0751",16497933,55,"Banerjee, A., Santos, W.L., Verdine, G.L.","Science",311,1153,2006,"Structure of a DNA glycosylase searching for lesions."]
["2F5Q","2F5Q","y",2.4,2.3199999999999998,77,0.21,"PD0752",16497933,52,"Banerjee, A., Santos, W.L., Verdine, G.L.","Science",311,1153,2006,"Structure of a DNA glycosylase searching for lesions."]
["2F5S","2F5S","y",2.4,2.57,59,0.22,"PD0753",16497933,54,"Banerjee, A., Santos, W.L., Verdine, G.L.","Science",311,1153,2006,"Structure of a DNA glycosylase searching for lesions."]
["2F8X","2F8X","y",3.3,3.63,44,0.24,"PD0754",16530044,null,"Nam, Y., Sliz, P., Song, L., Aster, J.C., Blacklow, S.C.","Cell",124,973,2006,"Structural basis for cooperativity in recruitment of MAML coactivators to Notch transcription complexes."]
["2FCC","2FCC","y",2.2999999999999998,2.2400000000000002,78,0.25,"PD0747",16916523,null,"Golan, G., Zharkov, D.O., Grollman, A.P., Dodson, M.L., McCullough, A.K., Lloyd, R.S., Shoham, G.","J.Mol.Biol.",362,241,2006,"Structure of T4 Pyrimidine Dimer Glycosylase in a Reduced Imine Covalent Complex with Abasic Site-containing DNA."]
["2FDC","2FDC","y",3.3,2.83,92,0.21,"PD0766",16532007,63,"Truglio, J.J., Karakas, E., Rhau, B., Wang, H., DellaVecchia, M.J., Van Houten, B., Kisker, C.","Nature SMB",13,360,2006,"Structural basis for DNA recognition and processing by UvrB."]
["2FIO","2FIO","y",2.7,3.2,39,0.23,"PD0780",16600871,51,"Badia, D., Camacho, A., Perez-Lago, L., Escandon, C., Salas, M., Coll, M.","Mol.Cell",22,73,2006,"The structure of phage phi29 transcription regulator p4-DNA complex reveals an N-hook motif for DNA"]
["2FLD","2FLD","y",2,2.57,28,0.23,"PD0765",16738662,42,"Ashworth, J., Havranek, J.J., Duarte, C.M., Sussman, D., Monnat, R.J., Stoddard, B.L., Baker, D.","Nature",441,656,2006,"Computational redesign of endonuclease DNA binding and cleavage specificity."]
["2FLP","2FLP","y",2.4,3.63,5,0.23,"PD0779",16615915,54,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Structure",14,749,2006,"An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site."]
["2FO1","2FO1","y",3.1,4.0999999999999996,11,0.27,"PD0759",16530045,64,"Wilson, J.J., Kovall, R.A.","Cell",124,985,2006,"Crystal structure of the CSL-Notch-Mastermind ternary complex bound to DNA."]
["2FQZ","2FQZ","y",2,2.6,27,0.22,"PD0811",16628220,46,"Bochtler, M., Szczepanowski, R.H., Tamulaitis, G., Grazulis, S., Czapinska, H., Manakova, E., Siksnys, V.","EMBO J.",25,2219,2006,"Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease"]
["2FR4","2FR4","y",2,2.0299999999999998,69,0.21,"PD0785",18028946,55,"Ou, Z., Bottoms, C.A., Henzl, M.T., Tanner, J.J.","J.Mol.Biol.",374,1029,2007,"Impact of DNA hairpin folding energetics on antibody-ssDNA association."]
["2FVP","2FVP","y",2.2999999999999998,2.52,54,0.28999999999999998,"PD0781",17003051,55,"Montano, S.P., Cote, M.L., Roth, M.J., Georgiadis, M.M.","NAR",34,5353,2006,"Crystal structures of oligonucleotides including the integrase processing site of the Moloney murine leukemia virus."]
["2FVQ","2FVQ","y",2.2999999999999998,2.61,52,0.26,"PD0782",17003051,56,"Montano, S.P., Cote, M.L., Roth, M.J., Georgiadis, M.M.","NAR",34,5353,2006,"Crystal structures of oligonucleotides including the integrase processing site of the Moloney murine leukemia virus."]
["2FVR","2FVR","y",2.2000000000000002,2.5299999999999998,48,0.26,"PD0783",17003051,55,"Montano, S.P., Cote, M.L., Roth, M.J., Georgiadis, M.M.","NAR",34,5353,2006,"Crystal structures of oligonucleotides including the integrase processing site of the Moloney murine leukemia virus."]
["2FVS","2FVS","y",2.4,2.87,36,0.27,"PD0784",17003051,55,"Montano, S.P., Cote, M.L., Roth, M.J., Georgiadis, M.M.","NAR",34,5353,2006,"Crystal structures of oligonucleotides including the integrase processing site of the Moloney murine leukemia virus."]
["2G1P","2G1P","y",1.9,1.77,84,0.19,"PD0787",16524590,45,"Horton, J.R., Liebert, K., Bekes, M., Jeltsch, A., Cheng, X.","J.Mol.Biol.",358,559,2006,"Structure and substrate recognition of the Escherichia coli DNA adenine methyltransferase."]
["2GB7","2GB7","y",1.7,2.0299999999999998,52,0.21,"PD0812",16628220,47,"Bochtler, M., Szczepanowski, R.H., Tamulaitis, G., Grazulis, S., Czapinska, H., Manakova, E., Siksnys, V.","EMBO J.",25,2219,2006,"Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease"]
["2GEQ","2GEQ","y",2.2999999999999998,2.7,45,0.2,"PD0791",16717092,48,"Ho, W.C., Fitzgerald, M.X., Marmorstein, R.","J.Biol.Chem.",281,20494,2006,"Structure of the p53 Core Domain Dimer Bound to DNA."]
["2GIE","2GIE","y",2.6,3.29,26,0.23,"PD0792",16675462,55,"Joshi, H.K., Etzkorn, C., Chatwell, L., Bitinaite, J., Horton, N.C.","J.Biol.Chem.",281,23852,2006,"Alteration of Sequence Specificity of the Type II Restriction Endonuclease HincII through an Indirect Readout Mechanism."]
["2GLI","2GLI","y",2.6,4.62,0,0.23,"PDT008",8378770,54,"Pavletich, N.P., Pabo, C.O.","Science",261,1701,1993,"Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers."]
["2GXA","2GXA","y",3.2,3.48,49,0.24,"PD0808",16855583,54,"Enemark, E.J., Joshua-Tor, L.","Nature",442,270,2006,"Mechanism of DNA translocation in a replicative hexameric helicase."]
["2H1K","2H1K","y",2.4,2.41,76,0.23,"PD0810",17315980,51,"Longo, A., Guanga, G.P., Rose, R.B.","Biochemistry",46,2948,2007,"Structural basis for induced fit mechanisms in DNA recognition by the pdx1 homeodomain"]
["2H27","2H27","y",2.2999999999999998,2.82,36,0.24,"PD0813",16903784,65,"Lane, W.J., Darst, S.A.","Plos Biol.",4,"e269",2006,"The structural basis for promoter -35 element recognition by the group IV sigma factors."]
["2H7H","2H7H","y",2.2999999999999998,2.91,29,0.22,"PD0818",null,61,"Kim, Y., Borovilos, M.","TBP",null,null,null,"Crystal structure of the JUN BZIP homodimer complexed with AP-1 DNA"]
["2H8C","2H8C","y",3.1,4.03,13,0.25,"PD0819",17028102,50,"Macmaster, R., Sedelnikova, S., Baker, P.J., Bolt, E.L., Lloyd, R.G., Rafferty, J.B.","NAR",34,5577,2006,"RusA Holliday junction resolvase: DNA complex structure--insights into selectivity and specificity."]
["2H8R","2H8R","y",3.2,4.34,5,0.23,"PD0820",17924661,63,"Lu, P., Rha, G.B., Chi, Y.I.","Biochemistry",46,12071,2007,"Structural basis of disease-causing mutations in hepatocyte nuclear factor 1beta."]
["2HAN","2HAN","y",2,1.98,73,0.18,"PD0822",17426125,48,"Jakob, M., Kolodziejczyk, R., Orlowski, M., Krzywda, S., Kowalska, A., Dutko-Gwozdz, J., Gwozdz, T., Kochman, M., Jaskolski, M., Ozyhar, A.","NAR",35,2705,2007,"Novel DNA-binding element within the C-terminal extension of the nuclear receptor DNA-binding domain."]
["2HAX","2HAX","y",1.3,1.28,92,0.13,"PD0821",17266726,40,"Max, K.E., Zeeb, M., Bienert, R., Balbach, J., Heinemann, U.","Febs J.",274,1265,2007,"Common mode of DNA binding to cold shock domains. Crystal structure of hexathymidine bound to the domain-swapped form of a major cold shock protein from Bacillus caldolyticus."]
["2HDD","2HDD","y",1.9,2.65,18,0.21,"PDT043",9309220,48,"Tucker-Kellogg, L., Rould, M.A., Chambers, K.A., Ades, S.E., Sauer, R.T., Pabo, C.O.","Structure",5,1047,1997,"Engrailed (Gln50-->Lys) homeodomain-DNA complex at 1.9 A resolution: structural basis for enhanced affinity and altered specificity."]
["2HHQ","2HHQ","y",1.8,1.73,83,0.21,"PD0824",17179038,57,"Warren, J.J., Forsberg, L.J., Beese, L.S.","PNAS",103,19701,2006,"The structural basis for the mutagenicity of O6-methyl-guanine lesions."]
["2HHS","2HHS","y",1.8,1.66,87,0.22,"PD0825",17179038,57,"Warren, J.J., Forsberg, L.J., Beese, L.S.","PNAS",103,19701,2006,"The structural basis for the mutagenicity of O6-methyl-guanine lesions."]
["2HHU","2HHU","y",1.8,1.58,90,0.2,"PD0827",17179038,58,"Warren, J.J., Forsberg, L.J., Beese, L.S.","PNAS",103,19701,2006,"The structural basis for the mutagenicity of O6-methyl-guanine lesions."]
["2HHX","2HHX","y",2.2999999999999998,2.12,85,0.21,"PD0830",17179038,59,"Warren, J.J., Forsberg, L.J., Beese, L.S.","PNAS",103,19701,2006,"The structural basis for the mutagenicity of O6-methyl-guanine lesions."]
["2HT0","2HT0","y",2,2.17,61,0.24,"PD0843",17097674,57,"Swinger, K.K., Rice, P.A.","J.Mol.Biol.",365,1005,2007,"Structure-based Analysis of HU-DNA Binding."]
["2HZV","2HZV","y",3.1,3.69,32,0.26,"PD0847",16945905,58,"Schreiter, E.R., Wang, S.C., Zamble, D.B., Drennan, C.L.","PNAS",103,13676,2006,"NikR-operator complex structure and the mechanism of repressor activation by metal ions."]
["2I13","2I13","y",2,1.86,82,0.2,"PD0851",16963084,57,"Segal, D.J., Crotty, J.W., Bhakta, M.S., Barbas, C.F., Horton, N.C.","J.Mol.Biol.",363,405,2006,"Structure of Aart, a Designed Six-finger Zinc Finger Peptide, Bound to DNA."]
["2I9T","2I9T","y",2.8,3.42,32,0.23,"PD0866",12005436,61,"Escalante, C.R., Shen, L., Thanos, D., Aggarwal, A.K.","Structure",10,383,2002,"Structure of NF-kappaB p50/p65 heterodimer bound to the PRDII DNA element from the interferon-beta promoter"]
["2IEF","2IEF","y",2.6,2.2599999999999998,92,0.2,"PD0872",17287355,58,"Abbani, M.A., Papagiannis, C.V., Sam, M.D., Cascio, D., Johnson, R.C., Clubb, R.T.","PNAS",104,2109,2007,"Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly."]
["2IHM","2IHM","y",2.4,2.4500000000000002,72,0.23,"PD0880",17159995,51,"Moon, A.F., Garcia-Diaz, M., Bebenek, K., Davis, B.J., Zhong, X., Ramsden, D.A., Kunkel, T.A., Pedersen, L.C.","Nature SMB",14,45,2007,"Structural insight into the substrate specificity of DNA Polymerase mu."]
["2IHN","2IHN","y",3,3.27,55,0.23,"PD0874",17693399,53,"Devos, J.M., Tomanicek, S.J., Jones, C.E., Nossal, N.G., Mueser, T.C.","J.Biol.Chem.",282,31713,2007,"Crystal structure of bacteriophage T4 5' nuclease in complex with a branched DNA reveals how FEN-1 family nucleases bind their substrates."]
["2IMW","2IMW","y",2.1,2.2000000000000002,62,0.23,"PD0881",17095011,54,"Fiala, K.A., Brown, J.A., Ling, H., Kshetry, A.K., Zhang, J., Taylor, J.S., Yang, W., Suo, Z.","J.Mol.Biol.",365,590,2007,"Mechanism of Template-independent Nucleotide Incorporation Catalyzed by a Template-dependent DNA Polymerase."]
["2IRF","2IRF","y",2.2000000000000002,2.27,69,0.2,"PD0076",10487755,66,"Fujii, Y., Shimizu, T., Kusumoto, M., Kyogoku, Y., Taniguchi, T., Hakoshima, T.","EMBO J.",18,5028,1999,"Crystal structure of an IRF-DNA complex reveals novel DNA recognition and cooperative binding to a tandem repeat of core sequences."]
["2IS1","2IS1","y",2.9,3.51,31,0.24,"PD0898",17190599,57,"Lee, J.Y., Yang, W.","Cell",127,1349,2006,"UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke."]
["2IS2","2IS2","y",3,3.83,18,0.23,"PD0899",17190599,58,"Lee, J.Y., Yang, W.","Cell",127,1349,2006,"UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke."]
["2IS4","2IS4","y",2.6,3.21,32,0.22,"PD0900",17190599,62,"Lee, J.Y., Yang, W.","Cell",127,1349,2006,"UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke."]
["2IS6","2IS6","y",2.2000000000000002,2.6,43,0.21,"PD0901",17190599,61,"Lee, J.Y., Yang, W.","Cell",127,1349,2006,"UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke."]
["2ITL","2ITL","y",1.7,2.2200000000000002,34,0.2,"PD0882",17139255,37,"Bochkareva, E., Martynowski, D., Seitova, A., Bochkarev, A.","EMBO J.",25,5961,2006,"Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA"]
["2IVH","2IVH","y",2.8,3.02,63,0.19,"2IVH",17175542,65,"Wang, Y.T., Yang, W.J., Li, C.L., Doudeva, L.G., Yuan, H.S.","NAR",35,584,2007,"Structural Basis for Sequence-Dependent DNA Cleavage by Nonspecific Endonucleases."]
["2IVK","2IVK","y",2.9,3.73,19,0.24,"2IVK",17175542,49,"Wang, Y.T., Yang, W.J., Li, C.L., Doudeva, L.G., Yuan, H.S.","NAR",35,584,2007,"Structural Basis for Sequence-Dependent DNA Cleavage by Nonspecific Endonucleases."]
["2J6S","2J6S","y",2.5,3.24,22,0.23,"2J6S",17105728,52,"Eoff, R.L., Irimia, A., Egli, M., Guengerich, F.P.","J.Biol.Chem.",282,1456,2007,"Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by 'Wobble' Pairing between O6- Methylguanine and Cytosine, But Accurate Bypass is Preferred."]
["2J6T","2J6T","y",2.6,3.15,36,0.24,"PD0911",17105728,54,"Eoff, R.L., Irimia, A., Egli, M., Guengerich, F.P.","J.Biol.Chem.",282,1456,2007,"Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by 'Wobble' Pairing between O6- Methylguanine and Cytosine, But Accurate Bypass is Preferred."]
["2KTQ","2KTQ","y",2.2999999999999998,3.54,6,0.22,"PD0030",9857206,45,"Li, Y., Korolev, S., Waksman, G.","EMBO J.",17,7514,1998,"Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation."]
["2NL8","2NL8","y",2.2999999999999998,3.15,17,0.24,"PD0883",17139255,55,"Bochkareva, E., Martynowski, D., Seitova, A., Bochkarev, A.","EMBO J.",25,5961,2006,"Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA"]
["2NLL","2NLL","y",1.9,3.35,2,0.21,"PDR021",7746322,50,"Rastinejad, F., Perlmann, T., Evans, R.M., Sigler, P.B.","Nature",375,203,1995,"Structural determinants of nuclear receptor assembly on DNA direct repeats."]
["2NNY","2NNY","y",2.6,2.89,55,0.24,"PD0888",18566588,59,"Lamber, E.P., Vanhille, L., Textor, L.C., Kachalova, G.S., Sieweke, M.H., Wilmanns, M.","EMBO J.",27,2006,2008,"Regulation of the transcription factor Ets-1 by DNA-mediated homo-dimerization."]
["2NP2","2NP2","y",3,3.16,65,0.24,"PD0903",17244195,53,"Mouw, K.W., Rice, P.A.","Mol.Microbiol.",63,1319,2007,"Shaping the Borrelia burgdorferi genome: crystal structure and binding properties of the DNA-bending protein Hbb."]
["2NQ9","2NQ9","y",1.5,1.6,76,0.22,"PD0902",18408731,55,"Garcin, E.D., Hosfield, D.J., Desai, S.A., Haas, B.J., Bjoras, M., Cunningham, R.P., Tainer, J.A.","Nature SMB",15,515,2008,"DNA apurinic-apyrimidinic site binding and excision by endonuclease IV."]
["2NQJ","2NQJ","y",2.5,2.19,88,0.2,"PD0906",18408731,50,"Garcin, E.D., Hosfield, D.J., Desai, S.A., Haas, B.J., Bjoras, M., Cunningham, R.P., Tainer, J.A.","Nature SMB",15,515,2008,"DNA apurinic-apyrimidinic site binding and excision by endonuclease IV."]
["2NRA","2NRA","y",3.1,3.43,50,0.23,"PD0907",17124167,64,"Swan, M.K., Bastia, D., Davies, C.","PNAS",103,18481,2006,"Crystal structure of pi initiator protein-iteron complex of plasmid R6K: implications for initiation of plasmid DNA replication."]
["2NTC","2NTC","y",2.4,2.92,35,0.21,"PD0908",17253903,49,"Meinke, G., Phelan, P., Moine, S., Bochkareva, E., Bochkarev, A., Bullock, P.A., Bohm, A.","Plos Biol.",5,"e23",2007,"The Crystal Structure of the SV40 T-Antigen Origin Binding Domain in Complex with DNA"]
["2O61","2O61","y",2.8,3.58,23,0.25,"PD0963",17574024,61,"Panne, D., Maniatis, T., Harrison, S.C.","Cell",129,1111,2007,"An Atomic Model of the Interferon-beta Enhanceosome."]
["2O6G","2O6G","y",3.1,3.61,38,0.25,"PD0949",17574024,74,"Panne, D., Maniatis, T., Harrison, S.C.","Cell",129,1111,2007,"An Atomic Model of the Interferon-beta Enhanceosome."]
["2O8E","2O8E","y",3.3,2.2000000000000002,99,0.26,"PD0954",17531815,60,"Warren, J.J., Pohlhaus, T.J., Changela, A., Iyer, R.R., Modrich, P.L., Beese, L.S.","Mol.Cell",26,579,2007,"Structure of the Human MutSalpha DNA Lesion Recognition Complex."]
["2O8F","2O8F","y",3.3,1.98,100,0.25,"PD0955",17531815,61,"Warren, J.J., Pohlhaus, T.J., Changela, A., Iyer, R.R., Modrich, P.L., Beese, L.S.","Mol.Cell",26,579,2007,"Structure of the Human MutSalpha DNA Lesion Recognition Complex."]
["2O93","2O93","y",3.1,3.34,52,0.23,"PD0957",18462673,59,"Bates, D.L., Barthel, K.K., Wu, Y., Kalhor, R., Stroud, J.C., Giffin, M.J., Chen, L.","Structure",16,684,2008,"Crystal structure of NFAT bound to the HIV-1 LTR tandem kappaB enhancer element"]
["2OAA","2OAA","y",1.5,1.25,96,0.18,"PD0958",17344322,44,"Kaus-Drobek, M., Czapinska, H., Sokolowska, M., Tamulaitis, G., Szczepanowski, R.H., Urbanke, C., Siksnys, V., Bochtler, M.","NAR",35,2035,2007,"Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically."]
["2OFI","2OFI","y",1.9,1.52,94,0.18,"PD0960",17410210,58,"Metz, A.H., Hollis, T., Eichman, B.F.","EMBO J.",26,2411,2007,"DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG)."]
["2OG0","2OG0","y",1.9,1.88,77,0.19,"PD0961",17275024,43,"Papagiannis, C.V., Sam, M.D., Abbani, M.A., Yoo, D., Cascio, D., Clubb, R.T., Johnson, R.C.","J.Mol.Biol.",367,328,2007,"Fis targets assembly of the xis nucleoprotein filament to promote excisive recombination by phage lambda."]
["2OH2","2OH2","y",3.1,3.46,42,0.23,"PD0962",null,null,"Lone, S., Townson, S.A., Uljon, S.N., Johnson, R.E., Brahma, A., Nair, D.T., Prakash, S., Prakash, L., Aggarwal, A.K.","TBP",null,null,null,"Ternary complex of the catalytic core of human DNA polymerase Kappa with DNA and dTT"]
["2OQ4","2OQ4","y",2.6,3.41,20,0.37,"PD0970",null,60,"Golan, G., Zharkov, D.O., Grollman, A.P., Shoham, G.","TBP",null,null,null,"Active site plasticity of endonuclease VIII: Conformational changes compensating for different substrates and mutations of critical residues"]
["2OR1","2OR1","y",2.5,4.3600000000000003,1,0.18,"PDR004",3187531,50,"Aggarwal, A.K., Rodgers, D.W., Drottar, M., Ptashne, M., Harrison, S.C.","Science",242,899,1988,"Recognition of a DNA operator by the repressor of phage 434: a view at high resolution."]
["2OST","2OST","y",3.1,3.18,69,0.28000000000000003,"PD0972",17410205,74,"Zhao, L., Bonocora, R.P., Shub, D.A., Stoddard, B.L.","EMBO J.",26,2432,2007,"The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif."]
["2OWO","2OWO","y",2.2999999999999998,2.82,36,0.22,"PD0978",17466627,51,"Nandakumar, J., Nair, P.A., Shuman, S.","Mol.Cell",26,257,2007,"Last Stop on the Road to Repair: Structure of E. coli DNA Ligase Bound to Nicked DNA-Adenylate."]
["2OXV","2OXV","y",2,2.63,23,0.2,"PD0974",17997963,54,"Sapienza, P.J., Rosenberg, J.M., Jen-Jacobson, L.","Structure",15,1368,2007,"Structural and thermodynamic basis for enhanced DNA binding by a promiscuous mutant EcoRI endonuclease."]
["2P0J","2P0J","y",2.1,1.92,85,0.2,"PD0976",17437717,50,"Townson, S.A., Samuelson, J.C., Bao, Y., Xu, S.Y., Aggarwal, A.K.","Structure",15,449,2007,"BstYI Bound to Noncognate DNA Reveals a 'Hemispecific' Complex: Implications for DNA Scanning."]
["2P2R","2P2R","y",1.6,1.94,54,0.21,"PD0977",17426136,56,"Fenn, S., Du, Z., Lee, J.K., Tjhen, R., Stroud, R.M., James, T.L.","NAR",35,2651,2007,"Crystal structure of the third KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.6 A resolution."]
["2P5L","2P5L","y",2.9,2.93,71,0.21,"PD0982",18455186,74,"Garnett, J.A., Marincs, F., Baumberg, S., Stockley, P.G., Phillips, S.E.","J.Mol.Biol.",379,284,2008,"Structure and function of the arginine repressor-operator complex from Bacillus subtilis."]
["2P66","2P66","y",2.5,2.33,85,0.22,"PD0983",16172026,49,"Prasad, R., Batra, V.K., Yang, X.-P., Krahn, J.M., Pedersen, L.C., Beard, W.A., Wilson, S.H.","DNA REPAIR",4,1347,2005,"Structural insight into the DNA  Polymerase beta deoxyribose phosphate lyase mechanism"]
["2P6R","2P6R","y",3,3.37,47,0.23,"PD0984",17558417,68,"Buttner, K., Nehring, S., Hopfner, K.P.","Nature SMB",14,647,2007,"Structural basis for DNA duplex separation by a superfamily-2 helicase."]
["2PFJ","2PFJ","y",3.1,2.72,91,0.27,"PD0996",17873858,58,"Hadden, J.M., Declais, A.C., Carr, S.B., Lilley, D.M., Phillips, S.E.","Nature",449,621,2007,"The structural basis of Holliday junction resolution by T7 endonuclease I."]
["2PI0","2PI0","y",2.2999999999999998,2.96,27,0.19,"PD1009",17560375,55,"Escalante, C.R., Nistal-Villan, E., Shen, L., Garcia-Sastre, A., Aggarwal, A.K.","Mol.Cell",26,703,2007,"Structure of IRF-3 bound to the PRDIII-I regulatory element of the human interferon-beta enhancer."]
["2PQU","2PQU","y",2.1,2.61,35,0.22,"PD1002",17526645,50,"Du, Z., Lee, J.K., Fenn, S., Tjhen, R., Stroud, R.M., James, T.L.","Rna",13,1043,2007,"X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2."]
["2PRT","2PRT","y",3.2,3.54,45,0.24,"PD1019",17716689,69,"Stoll, R., Lee, B.M., Debler, E.W., Laity, J.H., Wilson, I.A., Dyson, H.J., Wright, P.E.","J.Mol.Biol.",372,1227,2007,"Structure of the Wilms tumor suppressor protein zinc finger domain bound to DNA"]
["2PUB","2PUB","y",2.7,3.88,7,0.17,"PDR041",7973627,null,"Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.","Science",266,763,1994,"Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices."]
["2PUC","2PUC","y",2.6,3.85,6,0.18,"PDR042",7973627,null,"Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.","Science",266,763,1994,"Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices."]
["2PUD","2PUD","y",2.6,3.89,5,0.18,"PDR046",7973627,null,"Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.","Science",266,763,1994,"Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices."]
["2PY5","2PY5","y",1.6,1.5,89,0.17,"PD1010",17611604,48,"Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.","EMBO J.",26,3494,2007,"Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases"]
["2PYL","2PYL","y",2.2000000000000002,1.89,90,0.2,"PD1012",17611604,50,"Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.","EMBO J.",26,3494,2007,"Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases"]
["2Q2K","2Q2K","y",3,3.89,15,0.26,"PD1007",18097417,47,"Schumacher, M.A., Glover, T.C., Brzoska, A.J., Jensen, S.O., Dunham, T.D., Skurray, R.A., Firth, N.","Nature",450,1268,2007,"Segrosome structure revealed by a complex of ParR with centromere DNA."]
["2QFJ","2QFJ","y",2.1,3.49,3,0.26,"PD1021",18059478,28,"Crichlow, G.V., Zhou, H., Hsiao, H.-H., Frederick, K.B., Debrosse, M., Yang, Y., Folta-Stogniew, E.J., Chung, H.-J., Fan, C., De La Cruz, E.M., Levens, D., Lolis, E., Braddock, D.","EMBO J.",27,277,2007,"Dimerization of FIR upon FUSE DNA binding suggests a mechanism of c-myc inhibition"]
["2QHB","2QHB","y",2.4,2.9,37,0.25,"PD1020",null,64,"Cho, H.-S., Byun, J.-S., Jun, S.-H., Han, W., Lee, W.","TBP",null,null,null,"Complex structure of plant telomere bindig protein, NgTRF and telomere DNA"]
["2QL2","2QL2","y",2.5,2.78,55,0.25,"PD1152",18069799,56,"Longo, A., Guanga, G.P., Rose, R.B.","Biochemistry",47,218,2008,"Crystal structure of E47-NeuroD1/beta2 bHLH domain-DNA complex: heterodimer selectivity and DNA recognition."]
["2QNC","2QNC","y",3.1,3.06,77,0.26,"PD1034",17873859,65,"Biertumpfel, C., Yang, W., Suck, D.","Nature",449,616,2007,"Crystal structure of T4 endonuclease VII resolving a Holliday junction."]
["2QNF","2QNF","y",3,2.93,79,0.25,"PD1035",17873859,63,"Biertumpfel, C., Yang, W., Suck, D.","Nature",449,616,2007,"Crystal structure of T4 endonuclease VII resolving a Holliday junction."]
["2QOJ","2QOJ","y",2.4,2.9,37,0.22,"PD1029",17720189,54,"Scalley-Kim, M., McConnell-Smith, A., Stoddard, B.L.","J.Mol.Biol.",372,1305,2007,"Coevolution of a homing endonuclease and its host target sequence."]
["2R0Q","2R0Q","y",3.2,3.41,57,0.27,"PD1036",18439894,79,"Mouw, K.W., Rowland, S.J., Gajjar, M.M., Boocock, M.R., Stark, W.M., Rice, P.A.","Mol.Cell",30,145,2008,"Architecture of a serine recombinase-DNA regulatory complex."]
["2R1J","2R1J","y",1.5,1.41,91,0.2,"PD1037",18237194,68,"Watkins, D., Hsiao, C., Woods, K.K., Koudelka, G.B., Williams, L.D.","Biochemistry",47,2325,2008,"P22 c2 repressor-operator complex: mechanisms of direct and indirect readout"]
["2R2T","2R2T","y",2,2.2200000000000002,56,0.22,"PD1032",18362349,55,"Goodwin, K.D., Lewis, M.A., Long, E.C., Georgiadis, M.M.","PNAS",105,5052,2008,"Crystal structure of DNA-bound Co(III) bleomycin B2: Insights on intercalation and minor groove binding."]
["2R2U","2R2U","y",2.2999999999999998,2.61,52,0.24,"PD1033",18362349,57,"Goodwin, K.D., Lewis, M.A., Long, E.C., Georgiadis, M.M.","PNAS",105,5052,2008,"Crystal structure of DNA-bound Co(III) bleomycin B2: Insights on intercalation and minor groove binding."]
["2R5Y","2R5Y","y",2.6,2.62,75,0.26,"PD1071",17981120,65,"Joshi, R., Passner, J.M., Rohs, R., Jain, R., Sosinsky, A., Crickmore, M.A., Jacob, V., Aggarwal, A.K., Honig, B., Mann, R.S.","Cell",131,530,2007,"Functional specificity of a Hox protein mediated by the recognition of minor groove structure"]
["2R5Z","2R5Z","y",2.6,3.23,31,0.23,"PD1072",17981120,53,"Joshi, R., Passner, J.M., Rohs, R., Jain, R., Sosinsky, A., Crickmore, M.A., Jacob, V., Aggarwal, A.K., Honig, B., Mann, R.S.","Cell",131,530,2007,"Functional specificity of a Hox protein mediated by the recognition of minor groove structure"]
["2R8H","2R8H","y",2.5,3.1,30,0.22,"PD1040",18563918,52,"Wang, Y., Musser, S.K., Saleh, S., Marnett, L.J., Egli, M., Stone, M.P.","Biochemistry",47,7322,2008,"Insertion of dNTPs opposite the 1,N2-propanodeoxyguanosine adduct by Sulfolobus solfataricus P2 DNA polymerase IV"]
["2R8I","2R8I","y",2.4,2.91,36,0.22,"PD1041",18563918,51,"Wang, Y., Musser, S.K., Saleh, S., Marnett, L.J., Egli, M., Stone, M.P.","Biochemistry",47,7322,2008,"Insertion of dNTPs opposite the 1,N2-propanodeoxyguanosine adduct by Sulfolobus solfataricus P2 DNA polymerase IV"]
["2R8J","2R8J","y",3.1,2.84,88,0.21,"PD1043",17991862,57,"Alt, A., Lammens, K., Chiocchini, C., Lammens, A., Pieck, J.C., Kuch, D., Hopfner, K.P., Carell, T.","Science",318,967,2007,"Bypass of DNA lesions generated during anticancer treatment with cisplatin by DNA polymerase eta"]
["2R8K","2R8K","y",3.3,3.36,69,0.23,"PD1038",17991862,57,"Alt, A., Lammens, K., Chiocchini, C., Lammens, A., Pieck, J.C., Kuch, D., Hopfner, K.P., Carell, T.","Science",318,967,2007,"Bypass of DNA lesions generated during anticancer treatment with cisplatin by DNA polymerase eta"]
["2R9L","2R9L","y",2.4,2.5,69,0.23,"PD1049",17947582,52,"Brissett, N.C., Pitcher, R.S., Juarez, R., Picher, A.J., Green, A.J., Dafforn, T.R., Fox, G.C., Blanco, L., Doherty, A.J.","Science",318,456,2007,"Structure of a NHEJ polymerase-mediated DNA synaptic complex"]
["2RAM","2RAM","y",2.4,3.46,9,0.21,"PDR051",9437432,59,"Chen, Y.Q., Ghosh, S., Ghosh, G.","Nat.Struct.Biol.",5,67,1998,"A novel DNA recognition mode by the NF-kappa B p65 homodimer."]
["2RBA","2RBA","y",2.8,3.93,9,0.23,"PD1056",18587051,65,"Maiti, A., Morgan, M.T., Pozharski, E., Drohat, A.C.","PNAS",105,8890,2008,"Crystal structure of human thymine DNA glycosylase bound to DNA elucidates sequence-specific mismatch recognition."]
["2RBF","2RBF","y",2.2999999999999998,1.82,94,0.21,"PD1052",18586269,43,"Zhou, Y., Larson, J.D., Bottoms, C.A., Arturo, E.C., Henzl, M.T., Jenkins, J.L., Nix, J.C., Becker, D.F., Tanner, J.J.","J.Mol.Biol.",381,174,2008,"Structural basis of the transcriptional regulation of the proline utilization regulon by multifunctional PutA."]
["2RDJ","2RDJ","y",2.2000000000000002,2.0499999999999998,83,0.22,"PD1044",18448122,55,"Wong, J.H., Fiala, K.A., Suo, Z., Ling, H.","J.Mol.Biol.",379,317,2008,"Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4."]
["2RGR","2RGR","y",3,3.13,66,0.23,"PD1050",18097402,60,"Dong, K.C., Berger, J.M.","Nature",450,1201,2007,"Structural basis for gate-DNA recognition and bending by type IIA topoisomerases."]
["2RVE","2RVE","y",3,3.72,24,0.18,"PDE002",8491171,53,"Winkler, F.K., Banner, D.W., Oefner, C., Tsernoglou, D., Brown, R.S., Heathman, S.P., Bryan, R.K., Martin, P.D., Petratos, K., Wilson, K.S.","EMBO J.",12,1781,1993,"The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments."]
["2SSP","2SSP","y",2.2999999999999998,2.4,63,0.18,"PD0053",9724657,59,"Parikh, S.S., Mol, C.D., Slupphaug, G., Bharati, S., Krokan, H.E., Tainer, J.A.","EMBO J.",17,5214,1998,"Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA."]
["2UP1","2UP1","y",2.1,1.92,85,0.2,"PD0087",10323862,null,"Ding, J., Hayashi, M.K., Zhang, Y., Manche, L., Krainer, A.R., Xu, R.M.","Genes Dev.",13,1102,1999,"Crystal structure of the two-RRM domain of hnRNP A1 (UP1) complexed with single-stranded telomeric DNA."]
["2UVU","2UVU","y",2.7,3.13,45,0.22,"2UVU",17468100,54,"Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P.","J.Biol.Chem.",282,19831,2007,"Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4."]
["2UVW","2UVW","y",2.1,2.58,35,0.25,"2UVW",17468100,55,"Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P.","J.Biol.Chem.",282,19831,2007,"Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4."]
["2UZK","2UZK","y",2.7,4.3499999999999996,1,0.24,"2UZK",null,null,"Tsai, K.-L., Sun, Y.-J., Huang, C.-Y., Yang, J.-Y., Hung, M.-C., Hsiao, C.-D.","TBP",null,null,null,"Crystal Structure of the Human Foxo3A-Dbd Bound to DNA"]
["2V1U","2V1U","y",3.1,4.25,5,0.26,"2V1U",17761880,60,"Gaudier, M., Schuwirth, B.S., Westcott, S.L., Wigley, D.B.","Science",317,1213,2007,"Structural Basis of DNA Replication Origin Recognition by an Orc Protein."]
["2V2T","2V2T","y",3.1,3.97,13,0.24,"2V2T",17869269,65,"Moorthy, A.K., Huang, D.B., Wang, V.Y., Vu, D., Ghosh, G.","J.Mol.Biol.",373,723,2007,"X-Ray Structure of a NF-kappaB p50/Relb/DNA Complex Reveals Assembly of Multiple Dimers on Tandem kappaB Sites."]
["2V4Q","2V4Q","y",2.6,2.83,60,0.21,"2V4Q",19492857,59,"Eoff, R.L., Stafford, J.B., Szekely, J., Rizzo, C.J., Egli, M., Guengerich, F.P., Marnett, L.J.","Biochemistry",null,null,2009,"Structural and Functional Analysis of Sulfolobus Solfataricus Y-Family DNA Polymerase Dpo4-Catalyzed Bypass of the Malondialdehyde-Deoxyguanosine Adduct."]
["2V4R","2V4R","y",2.5,2.88,47,0.22,"2V4R",19492857,60,"Eoff, R.L., Stafford, J.B., Szekely, J., Rizzo, C.J., Egli, M., Guengerich, F.P., Marnett, L.J.","Biochemistry",null,null,2009,"Structural and Functional Analysis of Sulfolobus Solfataricus Y-Family DNA Polymerase Dpo4-Catalyzed Bypass of the Malondialdehyde-Deoxyguanosine Adduct."]
["2V6E","2V6E","y",3.2,3.69,38,0.26,"2V6E",17889664,66,"Aihara, H., Huang, W.M., Ellenberger, T.","Mol.Cell",27,901,2007,"An Interlocked Dimer of the Protelomerase Telk Distorts DNA Structure for the Formation of Hairpin Telomeres"]
["2VBJ","2VBJ","y",2,2.54,29,0.15,"2VBJ",null,59,"Redondo, P., Prieto, J., Munoz, I.G., Alibes, A., Stricher, F., Serrano, L., Cabaniols, J.P., Daboussi, F., Arnould, S., Perez, C., Duchateau, P., Paques, F., Blanco, F.J., Montoya, G.","Nature",456,107,2008,"Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases"]
["2VBO","2VBO","y",1.8,2.5499999999999998,20,0.15,"2VBO",null,45,"Redondo, P., Prieto, J., Munoz, I.G., Alibes, A., Stricher, F., Serrano, L., Cabaniols, J.P., Daboussi, F., Arnould, S., Perez, C., Duchateau, P., Paques, F., Blanco, F.J., Montoya, G.","Nature",456,107,2008,"Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases"]
["2VE9","2VE9","y",1.9,1.83,81,0.2,"2VE9",18722176,null,"Lowe, J., Ellonen, A., Allen, M.D., Atkinson, C., Sherratt, D.J., Grainge, I.","Mol.Cell",31,498,2008,"Molecular Mechanism of Sequence-Directed DNA Loading and Translocation by Ftsk."]
["2VHG","2VHG","y",2.9,3.18,57,0.28999999999999998,"2VHG",18243097,54,"Barabas, O., Ronning, D.R., Guynet, C., Hickman, A.B., Ton-Hoang, B., Chandler, M., Dyda, F.","Cell",132,208,2008,"Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection."]
["2VJU","2VJU","y",2.4,2.33,79,0.19,"2VJU",18243097,52,"Barabas, O., Ronning, D.R., Guynet, C., Hickman, A.B., Ton-Hoang, B., Chandler, M., Dyda, F.","Cell",132,208,2008,"Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection."]
["2VLA","2VLA","y",1.3,1.24,94,0.14000000000000001,"2VLA",18433771,55,"Sukackaite, R., Grazulis, S., Bochtler, M., Siksnys, V.","J.Mol.Biol.",378,1084,2008,"The Recognition Domain of the Bpuji Restriction Endonuclease in Complex with Cognate DNA at 1.3-A Resolution."]
["2VOA","2VOA","y",1.7,1.64,83,0.2,"2VOA",19015049,44,"Schmiedel, R., Kuettner, E.B., Keim, A., Strater, N., Greiner-Stoffele, T.","DNA Repair",8,219,2009,"Structure and Function of the Abasic Site Specificity Pocket of an Ap Endonuclease from Archaeoglobus Fulgidus."]
["2VS7","2VS7","y",2.1,2.23,60,0.19,"2VS7",18974222,59,"Marcaida, M.J., Prieto, J., Redondo, P., Nadra, A.D., Alibes, A., Serrano, L., Grizot, S., Duchateau, P., Paques, F., Blanco, F.J., Montoya, G.","PNAS",105,16888,2008,"Crystal Structure of I-Dmoi in Complex with its Target DNA Provides New Insights Into Meganuclease Engineering."]
["2VS8","2VS8","y",2.1,2.42,48,0.2,"2VS8",18974222,74,"Marcaida, M.J., Prieto, J., Redondo, P., Nadra, A.D., Alibes, A., Serrano, L., Grizot, S., Duchateau, P., Paques, F., Blanco, F.J., Montoya, G.","PNAS",105,16888,2008,"Crystal Structure of I-Dmoi in Complex with its Target DNA Provides New Insights Into Meganuclease Engineering."]
["2VW9","2VW9","y",2.2999999999999998,3.19,15,0.24,"2VW9",19285993,45,"Chan, K.-W., Lee, Y.-J., Wang, C.-H., Huang, H., Sun, Y.-J.","J.Mol.Biol.",388,508,2009,"Single-Stranded DNA-Binding Protein Complex from Helicobacter Pylori Suggests an Ssdna-Binding Surface."]
["2VWJ","2VWJ","y",2.8,2.85,74,0.23,"2VWJ",18614176,76,"Firbank, S.J., Wardle, J., Heslop, P., Lewis, R.J., Connolly, B.A.","J.Mol.Biol.",381,529,2008,"Uracil Recognition in Archaeal DNA Polymerases Captured by X-Ray Crystallography."]
["2VY1","2VY1","y",2.1,1.78,91,0.23,"2VY1",18784751,79,"Hames, C., Ptchelkine, D., Grimm, C., Thevenon, E., Moyroud, E., Gerard, F., Martiel, J., Benlloch, R., Parcy, F., Muller, C.W.","EMBO J.",27,2628,2008,"Structural Basis for Leafy Floral Switch Function and Similarity with Helix-Turn-Helix Proteins."]
["2VY2","2VY2","y",2.2999999999999998,1.79,96,0.23,"2VY2",18784751,79,"Hames, C., Ptchelkine, D., Grimm, C., Thevenon, E., Moyroud, E., Gerard, F., Martiel, J., Benlloch, R., Parcy, F., Muller, C.W.","EMBO J.",27,2628,2008,"Structural Basis for Leafy Floral Switch Function and Similarity with Helix-Turn-Helix Proteins."]
["2VZ4","2VZ4","y",2.9,2.0699999999999998,99,0.24,"NA0347",null,60,"Allan, M.G., Newberry, K.J., Schuman, J., Brennan, R.G., Stetefeld, J., Grzesiek, S., Schirmer, T.","TBP",null,null,null,"Structure of the Transcriptionally Inactive Merr Domain Tipan in Complex with DNA"]
["2W35","2W35","y",2.2000000000000002,2.56,41,0.26,"2W35",19136958,59,"Dalhus, B., Arvai, A.S., Rosnes, I., Olsen, O.E., Backe, P.H., Alseth, I., Gao, H., Cao, W., Tainer, J.A., Bjoras, M.","Nature SMB",16,138,2009,"Structures of Endonuclease V with DNA Reveal Initiation of Deaminated Adenine Repair."]
["2W36","2W36","y",2.1,2.48,43,0.22,"2W36",19136958,53,"Dalhus, B., Arvai, A.S., Rosnes, I., Olsen, O.E., Backe, P.H., Alseth, I., Gao, H., Cao, W., Tainer, J.A., Bjoras, M.","Nature SMB",16,138,2009,"Structures of Endonuclease V with DNA Reveal Initiation of Deaminated Adenine Repair."]
["2W42","2W42","y",1.9,2.39,36,0.21,"2W42",19187762,53,"Parker, J.S., Parizotto, E.A., Wang, M., Roe, S.M., Barford, D.","Mol.Cell",33,204,2009,"Enhancement of the Seed-Target Recognition Step in RNA Silencing by a Piwi-Mid Domain Protein"]
["2W7N","2W7N","y",1.9,1.45,96,0.17,"2W7N",19190096,65,"Koenig, B., Mueller, J.J., Lanka, E., Heinemann, U.","TBP",null,null,null,"Crystal Structure of Kora Bound to Operator DNA: Insight Into Repressor Cooperation in Rp4 Gene Regulation"]
["2W7O","2W7O","y",3.2,3.8,30,0.24,"2W7O",19542228,75,"Irimia, A., Eoff, R.L., Guengerich, F.P., Egli, M.","J.Biol.Chem.",284,22467,2009,"Structural and Functional Elucidation of the Mechanism Promoting Error-Prone Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-Oxo-2'-Deoxyguanosine Adduct."]
["2W9A","2W9A","y",2.6,2.99,48,0.21,"2W9A",19542237,54,"Zhang, H., Eoff, R.L., Kozekov, I.D., Rizzo, C.J., Egli, M., Guengerich, F.P.","J.Biol.Chem.",284,17687,2009,"Structure-Function Relationships in Miscoding by Sulfolobus Solfataricus DNA Polymerase Dpo4: Guanine N2,N2-Dimethyl Substitution Produces Inactive and Miscoding Polymerase Complexes."]
["2W9C","2W9C","y",2.9,3.98,9,0.25,"2W9C",19542237,53,"Zhang, H., Eoff, R.L., Kosekov, I.D., Rizzo, C.J., Egli, M., Guengerich, F.P.","J.Biol.Chem.",284,17687,2009,"Structure-Function Relationships in Miscoding by Sulfolobus Solfataricus DNA Polymerase Dpo4: Guanine N2,N2-Dimethyl Substitution Produces Inactive and Miscoding Polymerase Complexes."]
["2WIW","2WIW","y",1.8,2.13,52,0.18,"2WIW",null,43,"Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.","TBP",null,null,null,"Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate"]
["2WIZ","2WIZ","y",3.3,3.42,64,0.21,"2WIZ",null,64,"Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.","TBP",null,null,null,"Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate"]
["2WJ0","2WJ0","y",3.1,3.09,76,0.21,"2WJ0",null,61,"Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.","TBP",null,null,null,"Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate"]
["2WWY","2WWY","y",2.9,2.52,92,0.2,"NA0414",null,68,"Pike, A.C.W., Zhang, Y., Schnecke, C., Chaikuad, A., Krojer, T., Cooper, C.D.O., Von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A., Bountra, C., Gileadi, O.","TBP",null,null,null,"Structure of Human Recq-Like Helicase in Complex with a DNA Substrate"]
["2YVH","2YVH","y",2.5,3.37,16,0.22,"PD0993",null,51,"Itou, H., Shirakihara, Y., Tanaka, I.","TBP",null,null,null,"Structural study on CGL2612, a novel identified TetR-family protein from C.glutamicum"]
["2Z3X","2Z3X","y",2.1,2.96,14,0.26,"PD1014",null,58,"Lee, K.S., Jedrzejas, M.J.","TBP",null,null,null,"Structure of a Protein-DNA Complex Essential for DNA Protection in Spore of Bacillus Species"]
["2Z70","2Z70","y",1.7,1.53,90,0.19,"PD1028",18305191,43,"Rodriguez, S.M., Panjikar, S., Van Belle, K., Wyns, L., Messens, J., Loris, R.","Protein Sci.",17,681,2008,"Nonspecific base recognition mediated by water bridges and hydrophobic stacking in ribonuclease I from Escherichia coli"]
["2Z9O","2Z9O","y",3.1,4.04,13,0.27,"PD1042",18000058,63,"Nakamura, A., Wada, C., Miki, K.","PNAS",104,18484,2007,"Structural basis for regulation of bifunctional roles in replication initiator protein"]
["2ZHG","2ZHG","y",2.8,3.43,31,0.24,"PD1091",18334645,61,"Watanabe, S., Kita, A., Kobayashi, K., Miki, K.","PNAS",105,4121,2008,"Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA"]
["2ZKF","2ZKF","y",2.6,2.75,62,0.22,"PD1098",18772891,53,"Arita, K., Ariyoshi, M., Tochio, H., Nakamura, Y., Shirakawa, M.","Nature",455,818,2008,"Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism"]
["2ZO2","2ZO2","y",3.1,3.15,71,0.23,"PD1135",18772888,56,"Hashimoto, H., Horton, J.R., Zhang, X., Bostick, M., Jacobsen, S.E., Cheng, X.","Nature",455,826,2008,"The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix"]
["3A01","3A01","y",2.7,2.9,62,0.23,"PD1250",null,null,"Miyazono, K., Zhi, Y., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.","TBP",null,null,null,"Cooperative DNA-binding and sequence-recognition mechanism of Aristaless and Clawless"]
["3A46","3A46","y",2.2000000000000002,2.64,40,0.21,"NA0056",19625256,47,"Imamura, K., Wallace, S.S., Doublie, S.","J.Biol.Chem.",284,26174,2009,"Structural Characterization of a Viral NEIL1 Ortholog Unliganded and Bound to Abasic Site-containing DNA"]
["3A4K","3A4K","y",2.2000000000000002,2.15,76,0.18,"NA0070",null,59,"Watanabe, N., Takasaki, Y., Sato, C., Ando, S., Tanaka, I.","TBP",null,null,null,"Crystal structures of restriction endonuclease HindIII complex with its cognate DNA and divalent cations"]
["3A5T","3A5T","y",2.8,3.44,31,0.26,"NA0120",19797082,80,"Kurokawa, H., Motohashi, H., Sueno, S., Kimura, M., Takagawa, H., Kanno, Y., Yamamoto, M., Tanaka, T.","Mol.Cell.Biol.",29,6232,2009,"Structural Basis of Alternative DNA Recognition by Maf Transcription Factors"]
["3AAF","3AAF","y",1.9,2.12,58,0.21,"NA0357",null,62,"Kitano, K., Kim, S.Y., Hakoshima, T.","Structure",18,null,2010,"Structural basis for DNA strand separation by the unconventional winged-helix domain of RECQ helicase WRN"]
["3B39","3B39","y",2.4,1.99,92,0.21,"PD1045",18193061,47,"Corn, J.E., Pelton, J.G., Berger, J.M.","Nature SMB",15,163,2008,"Identification of a DNA primase template tracking site redefines the geometry of primer synthesis."]
["3BEP","3BEP","y",1.9,2.39,37,0.21,"PD1054",18191219,42,"Georgescu, R.E., Kim, S.S., Yurieva, O., Kuriyan, J., Kong, X.-P., O'Donnell, M.","Cell",132,43,2008,"Structure of a sliding clamp on DNA"]
["3BJY","3BJY","y",2.4,2.85,41,0.23,"PD1051",18275815,72,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Structure",16,239,2008,"Protein-template-directed synthesis across an acrolein-derived DNA adduct by yeast Rev1 DNA polymerase"]
["3BKZ","3BKZ","y",1.7,1.27,97,0.19,"PD1060",18432238,47,"Yang, C.-G., Yi, C., Duguid, E.M., Sullivan, C.T., Jian, X., Rice, P.A., He, C.","Nature",452,961,2008,"Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA"]
["3BM3","3BM3","y",1.7,1.68,81,0.17,"PD1062",null,39,"Szczepanowski, R.H., Carpenter, M., Czapinska, H., Tamulaitis, G., Siksnys, V., Bhagwat, A., Bochtler, M.","TBP",null,null,null,"A direct crystallographic demonstration that Type II restriction endonuclease PspGI flips nucleotides"]
["3BRD","3BRD","y",2.2000000000000002,2.5099999999999998,50,0.21,"PD1067",18381292,56,"Friedmann, D.R., Wilson, J.J., Kovall, R.A.","J.Biol.Chem.",283,14781,2008,"RAM-induced Allostery Facilitates Assembly of a Notch Pathway Active Transcription Complex."]
["3BRF","3BRF","y",2.5,3.14,28,0.23,"PD1068",18381292,53,"Friedmann, D.R., Wilson, J.J., Kovall, R.A.","J.Biol.Chem.",283,14781,2008,"RAM-induced Allostery Facilitates Assembly of a Notch Pathway Active Transcription Complex."]
["3BRG","3BRG","y",2.2000000000000002,2.76,31,0.22,"PD1069",18381292,61,"Friedmann, D.R., Wilson, J.J., Kovall, R.A.","J.Biol.Chem.",283,14781,2008,"RAM-induced Allostery Facilitates Assembly of a Notch Pathway Active Transcription Complex."]
["3BS1","3BS1","y",1.6,1.1599999999999999,99,0.2,"PD1057",18462677,52,"Sidote, D.J., Barbieri, C.M., Wu, T., Stock, A.M.","Structure",16,727,2008,"Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with an Unusual Mode of Binding."]
["3BTX","3BTX","y",2,1.5,97,0.22,"PD1070",18432238,62,"Yang, C.G., Yi, C., Duguid, E.M., Sullivan, C.T., Jian, X., Rice, P.A., He, C.","Nature",452,961,2008,"Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA."]
["3BTZ","3BTZ","y",3,2.88,82,0.24,"PD1130",18432238,68,"Yang, C.G., Yi, C., Duguid, E.M., Sullivan, C.T., Jian, X., Rice, P.A., He, C.","Nature",452,961,2008,"Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA."]
["3BU0","3BU0","y",2.5,2.08,94,0.23,"PD1073",18432238,61,"Yang, C.G., Yi, C., Duguid, E.M., Sullivan, C.T., Jian, X., Rice, P.A., He, C.","Nature",452,961,2008,"Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA."]
["3C0W","3C0W","y",2.2000000000000002,3.1,13,0.27,"PD1075",18424798,49,"Moure, C.M., Gimble, F.S., Quiocho, F.A.","NAR",36,3287,2008,"Crystal structures of I-SceI complexed to nicked DNA substrates: snapshots of intermediates along the DNA cleavage reaction pathway."]
["3C25","3C25","y",2.5,2.58,70,0.23,"PD1131",18400177,45,"Lambert, A.R., Sussman, D., Shen, B., Maunus, R., Nix, J., Samuelson, J., Xu, S.Y., Stoddard, B.L.","Structure",16,558,2008,"Structures of the Rare-Cutting Restriction Endonuclease NotI Reveal a Unique Metal Binding Fold Involved in DNA Binding."]
["3C2I","3C2I","y",2.5,2.71,61,0.22,"PD1080",18313390,44,"Ho, K.L., McNae, I.W., Schmiedeberg, L., Klose, R.J., Bird, A.P., Walkinshaw, M.D.","Mol.Cell",29,525,2008,"MeCP2 binding to DNA depends upon hydration at methyl-CpG"]
["3C2P","3C2P","y",2,2.41,41,0.22,"PD1083",19061645,48,"Gleghorn, M.L., Davydova, E.K., Rothman-Denes, L.B., Murakami, K.S.","Mol.Cell",32,707,2008,"Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase."]
["3C3L","3C3L","y",2.4,2.65,57,0.22,"PD1084",19061645,49,"Gleghorn, M.L., Davydova, E.K., Rothman-Denes, L.B., Murakami, K.S.","Mol.Cell",32,707,2008,"Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase."]
["3C46","3C46","y",2,2.44,38,0.21,"PD1086",19061645,49,"Gleghorn, M.L., Davydova, E.K., Rothman-Denes, L.B., Murakami, K.S.","Mol.Cell",32,707,2008,"Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase."]
["3CBB","3CBB","y",2,2.12,65,0.21,"PD1094",18829458,43,"Lu, P., Rha, G.B., Melikishvili, M., Wu, G., Adkins, B.C., Fried, M.G., Chi, Y.I.","J.Biol.Chem.",283,33685,2008,"Structural basis of natural promoter recognition by a unique nuclear receptor, HNF4alpha. Diabetes gene product."]
["3CFR","3CFR","y",2.4,2.5499999999999998,65,0.2,"PD1106",null,52,"Klimenko, D., Wang, M., Steitz, T.A., Konigsberg, W.H., Wang, J.","TBP",null,null,null,"Insights into base selectivity from the structures   of an RB69 DNA Polymerase triple mutant"]
["3CLC","3CLC","y",2.8,3.53,26,0.21,"PD1095",18644840,67,"McGeehan, J.E., Streeter, S.D., Thresh, S.J., Ball, N., Ravelli, R.B., Kneale, G.G.","NAR",36,4778,2008,"Structural analysis of the genetic switch that regulates the expression of restriction-modification genes."]
["3CLZ","3CLZ","y",2.2000000000000002,2.17,76,0.19,"PD1099",18772889,62,"Avvakumov, G.V., Walker, J.R., Xue, S., Li, Y., Duan, S., Bronner, C., Arrowsmith, C.H., Dhe-Paganon, S.","Nature",455,822,2008,"Structural basis for recognition of hemi-methylated DNA by the SRA domain of human UHRF1."]
["3CMT","3CMT","y",3.2,2.56,95,0.22,"PD1107",18497818,52,"Chen, Z., Yang, H., Pavletich, N.P.","Nature",453,489,2008,"Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures."]
["3CMW","3CMW","y",2.8,2.5099999999999998,91,0.21,"PD1109",18497818,52,"Chen, Z., Yang, H., Pavletich, N.P.","Nature",453,489,2008,"Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures."]
["3CMY","3CMY","y",2,1.85,82,0.17,"PD1100",19199574,37,"Birrane, G., Soni, A., Ladias, J.A.","Biochemistry",48,1148,2009,"Structural Basis for DNA Recognition by the Human PAX3 Homeodomain."]
["3CO6","3CO6","y",2.1,2.4,50,0.21,"PD1102",18786403,60,"Brent, M.M., Anand, R., Marmorstein, R.","Structure",16,1407,2008,"Structural Basis for DNA Recognition by FoxO1 and Its Regulation by Posttranslational Modification."]
["3CO7","3CO7","y",2.9,3.49,34,0.27,"PD1103",18786403,null,"Brent, M.M., Anand, R., Marmorstein, R.","Structure",16,1407,2008,"Structural Basis for DNA Recognition by FoxO1 and Its Regulation by Posttranslational Modification."]
["3COA","3COA","y",2.2000000000000002,2.0499999999999998,83,0.22,"PD1104",18786403,56,"Brent, M.M., Anand, R., Marmorstein, R.","Structure",16,1407,2008,"Structural Basis for DNA Recognition by FoxO1 and Its Regulation by Posttranslational Modification."]
["3COQ","3COQ","y",2.4,3.75,4,0.21,"PD1101",18611375,65,"Hong, M., Fitzgerald, M.X., Harper, S., Luo, C., Speicher, D.W., Marmorstein, R.","Structure",16,1019,2008,"Structural basis for dimerization in DNA recognition by gal4."]
["3CRO","3CRO","y",2.5,4.21,1,0.22,"PDR001",2038059,48,"Mondragon, A., Harrison, S.C.","J.Mol.Biol.",219,321,1991,"The phage 434 Cro/OR1 complex at 2.5 A resolution."]
["3D0P","3D0P","y",1.8,2.0099999999999998,62,0.22,"PD1139",18719385,56,"Pallan, P.S., Egli, M.","Cell Cycle",7,2562,2008,"Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complex."]
["3D1N","3D1N","y",2.5,3.57,9,0.21,"PD1136",19450691,58,"Pereira, J.H., Kim, S.H.","J.Struct.Biol.",167,159,2009,"Structure of human Brn-5 transcription factor in complex with CRH gene promoter."]
["3D2W","3D2W","y",1.7,1.4,94,0.21,"PD1138",19174564,43,"Kuo, P.H., Doudeva, L.G., Wang, Y.T., Shen, C.K., Yuan, H.S.","NAR",37,1799,2009,"Structural insights into TDP-43 in nucleic-acid binding and domain interactions"]
["3D6Z","3D6Z","y",2.6,3.18,34,0.23,"PD1144",18658145,79,"Newberry, K.J., Huffman, J.L., Miller, M.C., Vazquez-Laslop, N., Neyfakh, A.A., Brennan, R.G.","J.Biol.Chem.",283,26795,2008,"Structures of BmrR-Drug Complexes Reveal a Rigid Multidrug Binding Pocket and Transcription Activation through Tyrosine Expulsion"]
["3DFV","3DFV","y",3.1,4.22,6,0.28000000000000003,"PD1149",18621058,50,"Bates, D.L., Chen, Y., Kim, G., Guo, L., Chen, L.","J.Mol.Biol.",381,1292,2008,"Crystal structures of multiple GATA zinc fingers bound to DNA reveal new insights into DNA recognition and self-association by GATA."]
["3DFX","3DFX","y",2.7,3.33,30,0.28000000000000003,"PD1148",18621058,58,"Bates, D.L., Chen, Y., Kim, G., Guo, L., Chen, L.","J.Mol.Biol.",381,1292,2008,"Crystal structures of multiple GATA zinc fingers bound to DNA reveal new insights into DNA recognition and self-association by GATA."]
["3DLB","3DLB","y",2.7,3.58,16,0.25,"PD1153",18754009,52,"Wang, Y., Sheng, G., Juranek, S., Tuschl, T., Patel, D.J.","Nature",456,209,2008,"Structure of the guide-strand-containing argonaute silencing complex."]
["3DLH","3DLH","y",3,3.48,39,0.23,"PD1155",18754009,46,"Wang, Y., Sheng, G., Juranek, S., Tuschl, T., Patel, D.J.","Nature",456,209,2008,"Structure of the guide-strand-containing argonaute silencing complex."]
["3DPG","3DPG","y",1.9,1.77,85,0.19,"PD1157",18701646,53,"Dunten, P.W., Little, E.J., Gregory, M.T., Manohar, V.M., Dalton, M., Hough, D., Bitinaite, J., Horton, N.C.","NAR",36,5405,2008,"The structure of SgrAI bound to DNA; recognition of an 8 base pair target."]
["3DSC","3DSC","y",2.7,2.34,92,0.23,"PD1159",18854158,42,"Williams, R.S., Moncalian, G., Williams, J.S., Yamada, Y., Limbo, O., Shin, D.S., Groocock, L.M., Cahill, D., Hitomi, C., Guenther, G., Moiani, D., Carney, J.P., Russell, P., Tainer, J.A.","Cell",135,97,2008,"Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair."]
["3DSD","3DSD","y",2.2000000000000002,1.93,89,0.2,"PD1160",18854158,53,"Williams, R.S., Moncalian, G., Williams, J.S., Yamada, Y., Limbo, O., Shin, D.S., Groocock, L.M., Cahill, D., Hitomi, C., Guenther, G., Moiani, D., Carney, J.P., Russell, P., Tainer, J.A.","Cell",135,97,2008,"Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair."]
["3E44",2.9999999999999999E+44,"y",2.5,2.75,58,0.18,"PD1173",18762194,44,"Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.","J.Mol.Biol.",383,186,2008,"DNA distortion and specificity in a sequence-specific endonuclease."]
["3E45",3.0000000000000001E+45,"y",2.8,2.97,66,0.18,"PD1174",18762194,44,"Babic, A.C., Little, E.J., Manohar, V.M., Bitinaite, J., Horton, N.C.","J.Mol.Biol.",383,186,2008,"DNA distortion and specificity in a sequence-specific endonuclease."]
["3E54",2.9999999999999999E+54,"y",2.5,2.82,52,0.23,"PD1179",18984620,54,"Nomura, N., Nomura, Y., Sussman, D., Klein, D., Stoddard, B.L.","NAR",36,6988,2008,"Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His-Cys box homing endonucleases"]
["3E6C","3E6C","y",1.8,2.4900000000000002,24,0.22,"PD1180",18717788,null,"Levy, C., Pike, K., Heyes, D.J., Joyce, M.G., Gabor, K., Smidt, H., van der Oost, J., Leys, D.","Mol.Microbiol.",70,151,2008,"Molecular basis of halorespiration control by CprK, a CRP-FNR type transcriptional regulator"]
["3EBC","3EBC","y",2.6,2.71,65,0.2,"PD1181",19081059,null,"Little, E.J., Babic, A.C., Horton, N.C.","Structure",16,1828,2008,"Early Interrogation and Recognition of DNA Sequence by Indirect Readout"]
["3ECP","3ECP","y",2.5,2.66,65,0.22,"PD1182",18790806,62,"Klenchin, V.A., Czyz, A., Goryshin, I.Y., Gradman, R., Lovell, S., Rayment, I., Reznikoff, W.S.","NAR",36,5855,2008,"Phosphate coordination and movement of DNA in the Tn5 synaptic complex: role of the (R)YREK motif"]
["3EI1","3EI1","y",2.8,2.8,78,0.22,"PD1184",19109893,60,"Scrima, A., Konickova, R., Czyzewski, B.K., Kawasaki, Y., Jeffrey, P.D., Groisman, R., Nakatani, Y., Iwai, S., Pavletich, N.P., Thoma, N.H.","Cell",135,1213,2008,"Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex."]
["3EI2","3EI2","y",2.6,2.4500000000000002,85,0.22,"PD1185",19109893,60,"Scrima, A., Konickova, R., Czyzewski, B.K., Kawasaki, Y., Jeffrey, P.D., Groisman, R., Nakatani, Y., Iwai, S., Pavletich, N.P., Thoma, N.H.","Cell",135,1213,2008,"Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex."]
["3ERE","3ERE","y",2.5,2.4500000000000002,78,0.23,"PD1188",18952097,64,"Cherney, L.T., Cherney, M.M., Garen, C.R., Lu, G.J., James, M.N.","J.Mol.Biol.",384,1330,2008,"Crystal structure of the arginine repressor protein in complex with the DNA operator from Mycobacterium tuberculosis."]
["3EY1","3EY1","y",1.6,2.96,3,0.19,"PD1213",19333476,53,"Pallan, P.S., Prakash, T.P., Li, F., Eoff, R.L., Manoharan, M., Egli, M.","Chem.Commun.(Camb.)",null,2017,2009,"A conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution."]
["3EYI","3EYI","y",1.5,1.52,83,0.16,"PD1193",19095800,null,"Ha, S.C., Kim, D., Hwang, H.Y., Rich, A., Kim, Y.G., Kim, K.K.","PNAS",105,20671,2008,"The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA reveals an unusual binding mode to Z-DNA."]
["3F21","3F21","y",2.2000000000000002,3,18,0.24,"PD1195",19074195,41,"Ha, S.C., Choi, J., Hwang, H.Y., Rich, A., Kim, Y.G., Kim, K.K.","NAR",37,629,2009,"The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZ{alpha}ADAR1"]
["3F22","3F22","y",2.5,2.8,53,0.22,"PD1196",19074195,38,"Ha, S.C., Choi, J., Hwang, H.Y., Rich, A., Kim, Y.G., Kim, K.K.","NAR",37,629,2009,"The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZ{alpha}ADAR1"]
["3F23","3F23","y",2.7,2.71,76,0.22,"PD1197",19074195,38,"Ha, S.C., Choi, J., Hwang, H.Y., Rich, A., Kim, Y.G., Kim, K.K.","NAR",37,629,2009,"The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZ{alpha}ADAR1"]
["3F27","3F27","y",2.8,2.77,74,0.24,"PD1194",19328208,46,"Palasingam, P., Jauch, R., Ng, C.K.L., Kolatkar, P.R.","J.Mol.Biol.",388,619,2009,"The Structure of Sox17 Bound to DNA Reveals a Conserved Bending Topology but Selective Protein Interaction Platforms"]
["3F8I","3F8I","y",2.2999999999999998,2.35,71,0.22,"PD1203",19077538,56,"Hashimoto, H., Horton, J.R., Zhang, X., Cheng, X.","Epigenetics",4,8,2009,"UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications."]
["3F8J","3F8J","y",2,1.68,91,0.2,"PD1204",19077538,54,"Hashimoto, H., Horton, J.R., Zhang, X., Cheng, X.","Epigenetics",4,8,2009,"UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications."]
["3FBD","3FBD","y",2.9,3.25,52,0.2,"PD1205",null,52,"Wang, Y.T., Wright, J.D., Doudeva, L.G., Jhang, H.C., Lim, C., Yuan, H.S.","TBP",null,null,null,"Redesign of high-affinity nonspecific nucleases with altered sequence preference"]
["3FDE","3FDE","y",1.4,1.64,71,0.15,"PD1211",19077538,53,"Hashimoto, H., Horton, J.R., Zhang, X., Cheng, X.","Epigenetics",4,8,2009,"UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications."]
["3FDQ","3FDQ","y",1.8,1.41,96,0.22,"PD1212",19446532,52,"Shen, A., Higgins, D.E., Panne, D.","Structure",17,769,2009,"Recognition of AT-Rich DNA Binding Sites by the MogR Repressor."]
["3FHZ","3FHZ","y",3.3,3.08,82,0.23,"PD1214",19265706,56,"Cherney, L.T., Cherney, M.M., Garen, C.R., James, M.N.","J.Mol.Biol.",388,85,2009,"The structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and Co-repressor, L-arginine."]
["3FMT","3FMT","y",3,2.21,98,0.22,"PD1215",19304745,69,"Chung, Y.S., Brendler, T., Austin, S., Guarne, A.","NAR",37,3143,2009,"Structural insights into the cooperative binding of SeqA to a tandem GATC repeat"]
["3G00","3G00","y",1.7,1.99,57,0.17,"PD1221",null,50,"Lakomek, K., Dickmanns, A., Ciirdaeva, E., Schomacher, L., Fritz, H.-J., Ficner, R.","TBP",null,null,null,"3'- 5' exo competes with 2'-desoxyuridine endonuclease activity: Structures of the archaeal ExoIII homologue Mth0212 without and in complex with different substrate DNAs"]
["3G0Q","3G0Q","y",2.2000000000000002,3.03,16,0.25,"PD1246",19841264,50,"Lee, S., Verdine, G.L.","PNAS",106,18497,2009,"Atomic substitution reveals the structural basis for substrate adenine recognition and removal by adenine DNA glycosylase."]
["3G0R","3G0R","y",2.4,2.65,57,0.18,"PD1222",null,54,"Lakomek, K., Dickmanns, A., Ciirdaeva, E., Schomacher, L., Fritz, H.-J., Ficner, R.","TBP",null,null,null,"3'- 5' exo competes with 2'-desoxyuridine endonuclease activity: Structures of the archaeal ExoIII homologue Mth0212 without and in complex with different substrate DNAs"]
["3G6T","3G6T","y",1.9,3.11,5,0.18,"PD1234",19372434,60,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3G6V","3G6V","y",2.2000000000000002,2.99,18,0.21,"PD1247",19368886,54,"Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Structure",17,530,2009,"DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota"]
["3G73","3G73","y",2.2000000000000002,1.67,96,0.21,"PD1230",null,60,"Littler, D.R., Hibbert, R.G., Medema, R.H., Perrakis, A.","TBP",null,null,null,"Structure of the Foxm1 DNA Binding Domain"]
["3G9J","3G9J","y",2.2999999999999998,2.64,50,0.19,"PD1242",19372434,66,"Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R.","Science",324,407,2009,"DNA binding site sequence directs glucocorticoid receptor structure and activity."]
["3GA6","3GA6","y",1.9,2.89,9,0.16,"PD1240",null,50,"Lakomek, K., Dickmanns, A., Ciirdaeva, E., Schomacher, L., Fritz, H.-J., Ficner, R.","TBP",null,null,null,"3'- 5' exo competes with 2'-desoxyuridine endonuclease activity: Structures of the archaeal ExoIII homologue Mth0212 without and in complex with different substrate DNAs"]
["3GDX","3GDX","y",2.2000000000000002,2.1800000000000002,75,0.21,"PD1257",19351147,44,"Upton, T.G., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Prakash, G.K., Kultyshev, R., Batra, V.K., Shock, D.D., Pedersen, L.C., Beard, W.A., Wilson, S.H.","Org.Lett.",11,1883,2009,"Alpha,beta-difluoromethylene deoxynucleoside 5'-triphosphates: a convenient synthesis of useful probes for DNA polymerase beta structure and function"]
["3GFI","3GFI","y",2.1,2.4500000000000002,46,0.23,"PD1251",19509310,52,"Kumarevel, T., Tanaka, T., Umehara, T., Yokoyama, S.","NAR",37,4723,2009,"ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators."]
["3GLG","3GLG","y",3.3,3.24,71,0.23,"PD1259",null,65,"Simonetta, K.R., Kazmirski, S.L., Goedken, E.R., Cantor, A.J., Kelch, B.A., McNally, R., Seyedin, S.N., Makino, D.L., O'Donnell, M., Kuriyan, J.","Cell",137,659,20090,"The Mechanism of ATP-Dependent Primer-Template Recognition by a Clamp Loader Complex"]
["3GNA","3GNA","y",2.4,2.16,88,0.24,"PD1261",19396172,43,"Yin, F.F., Bailey, S., Innis, C.A., Ciubotaru, M., Kamtekar, S., Steitz, T.A., Schatz, D.G.","Nature SMB",16,499,2009,"Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis."]
["3GNB","3GNB","y",3,2.2999999999999998,98,0.24,"PD1262",19396172,43,"Yin, F.F., Bailey, S., Innis, C.A., Ciubotaru, M., Kamtekar, S., Steitz, T.A., Schatz, D.G.","Nature SMB",16,499,2009,"Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis."]
["3GP8","3GP8","y",2.5,2.71,60,0.23,"PD1273",19490894,54,"Saikrishnan, K., Powell, B., Cook, N.J., Webb, M.R., Wigley, D.B.","Cell",137,849,2009,"Mechanistic basis of 5'-3' translocation in SF1B helicases."]
["3GPL","3GPL","y",2.5,3.17,26,0.23,"PD1274",19490894,52,"Saikrishnan, K., Powell, B., Cook, N.J., Webb, M.R., Wigley, D.B.","Cell",137,849,2009,"Mechanistic basis of 5'-3' translocation in SF1B helicases."]
["3GQ3","3GQ3","y",1.8,1.4,97,0.18,"PD1267",20010681,57,"Qi, Y., Spong, M.C., Nam, K., Banerjee, A., Jiralerspong, S., Karplus, M., Verdine, G.L.","Nature",462,762,2009,"Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme."]
["3GQ4","3GQ4","y",1.7,1.47,92,0.17,"PD1268",20010681,55,"Qi, Y., Spong, M.C., Nam, K., Banerjee, A., Jiralerspong, S., Karplus, M., Verdine, G.L.","Nature",462,762,2009,"Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme."]
["3GQ5","3GQ5","y",1.9,1.54,94,0.2,"PD1269",20010681,55,"Qi, Y., Spong, M.C., Nam, K., Banerjee, A., Jiralerspong, S., Karplus, M., Verdine, G.L.","Nature",462,762,2009,"Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme."]
["3GQC","3GQC","y",2.5,2.35,84,0.22,"PD1271",19464298,50,"Swan, M.K., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","J.Mol.Biol.",390,699,2009,"Structure of the human Rev1-DNA-dNTP ternary complex."]
["3GV5","3GV5","y",2,2.75,18,0.21,"PD1280",19440206,55,"Kirouac, K.N., Ling, H.","EMBO J.",28,1644,2009,"Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota"]
["3GXQ","3GXQ","y",2.4,2.82,39,0.24,"PD1276",19759211,44,"Ni, L., Jensen, S.O., Ky Tonthat, N., Berg, T., Kwong, S.M., Guan, F.H., Brown, M.H., Skurray, R.A., Firth, N., Schumacher, M.A.","NAR",37,6970,2009,"The Staphylococcus aureus pSK41 plasmid-encoded ArtA protein is a master regulator of plasmid transmission genes and contains a RHH motif used in alternate DNA-binding modes."]
["3GZ6","3GZ6","y",2.9,2.73,85,0.18,"PD1284",19604474,67,"Huang, N., De Ingeniis, J., Galeazzi, L., Mancini, C., Korostelev, Y.D., Rakhmaninova, A.B., Gelfand, M.S., Rodionov, D.A., Raffaelli, N., Zhang, H.","Structure",17,939,2009,"Structure and function of an ADP-ribose-dependent transcriptional regulator of NAD metabolism"]
["3H0D","3H0D","y",2.4,3.02,29,0.22,"PD1278",19498169,68,"Fuhrmann, J., Schmidt, A., Spiess, S., Lehner, A., Turgay, K., Mechtler, K., Charpentier, E., Clausen, T.","Science",324,1323,2009,"McsB is a protein arginine kinase that phosphorylates and inhibits the heat-shock regulator CtsR"]
["3H15","3H15","y",2.7,3.28,34,0.2,"PD1283",19608746,61,"Warren, E.M., Huang, H., Fanning, E., Chazin, W.J., Eichman, B.F.","J.Biol.Chem.",284,24662,2009,"Physical Interactions between Mcm10, DNA, and DNA Polymerase {alpha}."]
["3H25","3H25","y",2.7,1.68,100,0.23,"PD1279",19416864,35,"Geibel, S., Banchenko, S., Engel, M., Lanka, E., Saenger, W.","PNAS",106,7810,2009,"Structure and function of primase RepB' encoded by broad-host-range plasmid RSF1010 that replicates exclusively in leading-strand mode"]
["3H40","3H40","y",2.2999999999999998,2.94,27,0.25,"PD1285",19604477,58,"Jain, R., Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Structure",17,974,2009,"Replication across template T/U by human DNA polymerase-iota."]
["3H4B","3H4B","y",2.9,3.39,36,0.24,"PD1286",null,57,"Jain, R., Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","TBP",null,null,null,"Ternary structure of polymerase iota"]
["3H4D","3H4D","y",2.2000000000000002,3.05,15,0.25,"PD1287",null,57,"Jain, R., Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","TBP",null,null,null,"Ternary complex of human DNA polymerase iota with template U/T and incoming dGTP"]
["3HDD","3HDD","y",2.2000000000000002,2.41,58,0.2,"PD0016",9813123,48,"Fraenkel, E., Rould, M.A., Chambers, K.A., Pabo, C.O.","J.Mol.Biol.",284,351,1998,"Engrailed homeodomain-DNA complex at 2.2 A resolution: a detailed view of the interface and comparison with other engrailed structures."]
["3HOT","3HOT","y",3.3,3.56,50,0.25,"NA0009",19766564,76,"Richardson, J.M., Colloms, S.D., Finnegan, D.J., Walkinshaw, M.D.","Cell",138,1096,2009,"Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote"]
["3HQF","3HQF","y",2.5,2.64,67,0.19,"NA0039",19729506,47,"Golovenko, D., Manakova, E., Tamulaitiene, G., Grazulis, S., Siksnys, V.","NAR",null,null,2009,"Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII."]
["3HQG","3HQG","y",2.6,2.79,63,0.24,"NA0040",19729506,41,"Golovenko, D., Manakova, E., Tamulaitiene, G., Grazulis, S., Siksnys, V.","NAR",null,null,2009,"Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII."]
["3HTS","3HTS","y",1.8,2.58,18,0.21,"PD0073",10331875,35,"Littlefield, O., Nelson, H.C.","Nat.Struct.Biol.",6,464,1999,"A new use for the 'wing' of the 'winged' helix-turn-helix motif in the HSF-DNA cocrystal."]
["3HW8","3HW8","y",2,1.99,72,0.21,"NA0067",null,59,"Garcia-Diaz, M., Bebenek, K., Larrea, A.A., Havener, J.M., Perera, L., Krahn, J.M., Pedersen, L.C., Ramsden, D.A., Kunkel, T.A.","TBP",null,null,null,"Scrunching Durning DNA Repair Synthesis"]
["3HWT","3HWT","y",2,1.89,79,0.23,"NA0068",null,59,"Garcia-Diaz, M., Bebenek, K., Larrea, A.A., Havener, J.M., Perera, L., Krahn, J.M., Pedersen, L.C., Ramsden, D.A., Kunkel, T.A.","TBP",null,null,null,"Scrunching during DNA repair synthesis"]
["3I8D","3I8D","y",1.6,1.95,54,0.2,"NA0155",19685868,56,"Pallan, P.S., Egli, M.","J.Am.Chem.Soc.",131,12548,2009,"Pairing geometry of the hydrophobic thymine analogue 2,4-difluorotoluene in duplex DNA as analyzed by X-ray crystallography."]
["3IAG","3IAG","y",2,2.16,61,0.2,"NA0092",19866488,58,"Friedmann, D.R., Kovall, R.A.","Protein Sci.",19,34,2010,"Thermodynamic and structural insights into CSL-DNA complexes."]
["3IAY","3IAY","y",2,2.25,54,0.2,"NA0085",19718023,51,"Swan, M.K., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.","Nature SMB",16,979,2009,"Structural basis of high-fidelity DNA synthesis by yeast DNA polymerase delta"]
["3IGC","3IGC","y",2.1,2.21,66,0.18,"NA0104",20152159,55,"Perry, K., Hwang, Y., Bushman, F.D., Van Duyne, G.D.","Structure",18,127,2010,"Insights from the Structure of a Smallpox Virus Topoisomerase-DNA Transition State Mimic."]
["3IGM","3IGM","y",2.2000000000000002,1.85,92,0.22,"NA0109",19913037,41,"Lindner, S.E., De Silva, E.K., Keck, J.L., Llinas, M.","J.Mol.Biol.",395,558,2010,"Structural Determinants of DNA Binding by a P. falciparum ApiAP2 Transcriptional Regulator."]
["3IN5","3IN5","y",3.2,3.27,67,0.23,"NA0133",19492058,66,"Vasquez-Del Carpio, R., Silverstein, T.D., Lone, S., Swan, M.K., Choudhury, J.R., Johnson, R.E., Prakash, S., Prakash, L., Aggarwal, A.K.","PLOS ONE",4,"e5766",2009,"Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion"]
["3JR5","3JR5","y",1.7,1.23,98,0.17,"NA0141",19889642,55,"Qi, Y., Spong, M.C., Nam, K., Karplus, M., Verdine, G.L.","J.Biol.Chem.",285,1468,2010,"Entrapment and structure of an extrahelical guanine attempting to enter the active site of a bacterial DNA glycosylase, MutM."]
["3JTG","3JTG","y",2.2000000000000002,2.75,32,0.23,"NA0167",null,51,"Agarkar, V.B., Babayeva, N.D., Wilder, P.J., Rizzino, A., Tahirov, T.H.","J.Mol.Biol.",null,null,null,"Crystal structure of mouse Elf3 C-terminal DNA-binding domain in complex with type II TGF-beta receptor promoter DNA"]
["3JXB","3JXB","y",1.7,1.84,68,0.2,"NA0181",20053356,47,"Watkins, D., Mohan, S., Koudelka, G.B., Williams, L.D.","J.Mol.Biol.",396,1145,2010,"Sequence Recognition of DNA by Protein-Induced Conformational Transitions"]
["3JXC","3JXC","y",1.9,1.65,90,0.19,"NA0182",20053356,68,"Watkins, D., Mohan, S., Koudelka, G.B., Williams, L.D.","J.Mol.Biol.",396,1145,2010,"Sequence Recognition of DNA by Protein-Induced Conformational Transitions."]
["3JXD","3JXD","y",2.1,1.74,93,0.18,"NA0183",20053356,68,"Watkins, D., Mohan, S., Koudelka, G.B., Williams, L.D.","J.Mol.Biol.",396,1145,2010,"Sequence Recognition of DNA by Protein-Induced Conformational Transitions."]
["3K0S","3K0S","y",2.2000000000000002,1.93,89,0.19,"NA0196",null,54,"Lebbink, J.H.G., Reumer, G.A., Fish, A., Natrajan, G., Winterwerp, H.H.K., Sixma, T.K.","TBP",null,null,null,"Magnesium coordination controls the molecular switch function of DNA mismatch repair protein MutS"]
["3K4X","3K4X","y",3,2.46,95,0.23,"NA0281",20113510,56,"McNally, R., Bowman, G.D., Goedken, E.R., O'Donnell, M., Kuriyan, J.","Bmc Struct.Biol.",10,3,2010,"Analysis of the role of PCNA-DNA contacts during clamp loading."]
["3K9F","3K9F","y",2.9,3.51,32,0.19,"NA0217",null,69,"Laponogov, I., Pan, X.-S., Veselkov, D.A., McAuley, K.E., Fisher, L.M., Sanderson, M.R.","TBP",null,null,2009,"Detailed structural analysis of topoisomerase IV-DNA complex with different quinolones"]
["3KDE","3KDE","y",1.7,1.49,92,0.18,"NA0235",null,47,"Sabogal, A., Lyubimov, A.Y., Corn, J.E., Berger, J.M., Rio, D.C.","TBP",null,null,null,"THAP domains target specific DNA sites using a bipartite DNA-binding interface with direct sequence readout in adjacent major and minor grooves"]
["3KHC","3KHC","y",2.2000000000000002,2.25,70,0.21,"NA0278",20084272,43,"Holland, P.J., Hollis, T.","Plos One",5,"e8680",2010,"Structural and mutational analysis of Escherichia coli AlkB provides insight into substrate specificity and DNA damage searching."]
["3KHL","3KHL","y",2.1,2.2799999999999998,60,0.21,"NA0321",null,52,"Rechkoblit, O., Kolbanovskiy, A., Malinina, L., Geacintov, N.E., Broyde, S., Patel, D.J.","TBP",null,null,null,"Y-family polymerase-facilitated mechanism of error-free bypass and semi-targeted mutagenic processing of an aromatic amine lesion"]
["3KJP","3KJP","y",1.8,2.39,31,0.21,"NA0290",20080730,52,"Nandakumar, J., Podell, E.R., Cech, T.R.","PNAS",107,651,2010,"How telomeric protein POT1 avoids RNA to achieve specificity for single-stranded DNA."]
["3KMD","3KMD","y",2.2000000000000002,1.99,83,0.22,"NA0356",null,44,"Chen, Y., Dey, R., Chen, L.","Structure",18,246,2010,"Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer"]
["3KMP","3KMP","y",2.7,1.68,100,0.21,"NA0355",20147459,61,"Baburajendran, N., Palasingam, P., Narasimhan, K., Sun, W., Prabhakar, S., Jauch, R., Kolatkar, P.R.","NAR",null,null,2010,"Structure of Smad1 MH1/DNA complex reveals distinctive rearrangements of BMP and TGF-{beta} effectors."]
["3KNT","3KNT","y",2.7,3.05,51,0.19,"NA0358",20083120,53,"Faucher, F., Wallace, S.S., Doublie, S.","J.Mol.Biol.",null,null,2010,"The C-terminal lysine of Ogg2 DNA glycosylases is a major molecular determinant for guanine/8-oxoguanine distinction."]
["3KOV","3KOV","y",2.9,3.35,43,0.22,"NA0353",20132824,56,"Wu, Y., Dey, R., Han, A., Jayathilaka, N., Philips, M., Ye, J., Chen, L.","J.Mol.Biol.",null,null,2010,"Structure of the MADS-box/MEF2 domain of MEF2A bound to DNA and its implication for the myocardin recruitment."]
["3KQH","3KQH","y",2.4,2.89,38,0.23,"NA0369",20080715,54,"Gu, M., Rice, C.M.","PNAS",107,521,2010,"Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism."]
["3KQK","3KQK","y",2.8,2.89,72,0.21,"NA0370",20080715,54,"Gu, M., Rice, C.M.","PNAS",107,521,2010,"Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism."]
["3KQU","3KQU","y",2.4,2.57,63,0.2,"NA0373",20080715,57,"Gu, M., Rice, C.M.","PNAS",107,521,2010,"Inaugural Article: Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism."]
["3L2C","3L2C","y",1.9,1.35,98,0.2,"NA0394",null,48,"Boura, E., Silhan, J., Sulc, M., Brynda, J., Obsilova, V., Obsil, T.","TBP",null,null,null,"Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNA"]
["3ORC","3ORC","y",3,4.32,3,null,"PD0022",9684880,48,"Albright, R.A., Mossing, M.C., Matthews, B.W.","Protein Sci.",7,1485,1998,"Crystal structure of an engineered Cro monomer bound nonspecifically to DNA: possible implications for nonspecific binding by the wild-type protein."]
["3PJR","3PJR","y",3.3,4.24,9,0.24,"PD0044",10199404,63,"Velankar, S.S., Soultanas, P., Dillingham, M.S., Subramanya, H.S., Wigley, D.B.","Cell",97,75,1999,"Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism"]
["4BDP","4BDP","y",1.8,2.86,8,0.25,"PDE0133",9440698,58,"Kiefer, J.R., Mao, C., Braman, J.C., Beese, L.S.","Nature",391,304,1998,"Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal."]
["4DPV","4DPV","y",2.9,3.18,57,null,"PDV006",8969301,null,"Xie, Q., Chapman, M.S.","J.Mol.Biol.",264,497,1996,"Canine parvovirus capsid structure, analyzed at 2.9 A resolution."]
["4KTQ","4KTQ","y",2.5,4.08,2,0.23,"PD0033",9857206,47,"Li, Y., Korolev, S., Waksman, G.","EMBO J.",17,7514,1998,"Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation."]
["4RVE","4RVE","y",3,4,11,0.18,"PDE003",8491171,47,"Winkler, F.K., Banner, D.W., Oefner, C., Tsernoglou, D., Brown, R.S., Heathman, S.P., Bryan, R.K., Martin, P.D., Petratos, K., Wilson, K.S.","EMBO J.",12,1781,1993,"The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments."]
["4SKN","4SKN","y",2.9,3.12,61,0.19,"PD0041",8900285,50,"Slupphaug, G., Mol, C.D., Kavli, B., Arvai, A.S., Krokan, H.E., Tainer, J.A.","Nature",384,87,1996,"A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA."]
["6CRO","6CRO","y",3,4.3099999999999996,3,0.19,"PDR053",9653037,47,"Albright, R.A., Matthews, B.W.","J.Mol.Biol.",280,137,1998,"Crystal structure of lambda-Cro bound to a consensus operator at 3.0 A resolution."]
["6PAX","6PAX","y",2.5,2.75,57,0.23,"PD0050",10346815,null,"Xu, H.E., Rould, M.A., Xu, W., Epstein, J.A., Maas, R.L., Pabo, C.O.","Genes Dev.",13,1263,1999,"Crystal structure of the human Pax6 paired domain-DNA complex reveals specific roles for the linker region and carboxy-terminal subdomain in DNA binding."]
["9ANT","9ANT","y",2.4,2.46,71,0.22,"PD0007",9699632,68,"Fraenkel, E., Pabo, C.O.","Nat.Struct.Biol.",5,692,1998,"Comparison of X-ray and NMR structures for the Antennapedia homeodomain-DNA complex."]

{"sheet":"Table S2","index":1,"n_rows":630,"n_cols":5,"rows_kept":630,"cut":false,"hidden":false,"merged":[[0,0,0,3],[103,0,103,3],[3,0,3,3],[42,0,42,3],[89,0,89,3]]}
["Table S2. Modified residues in the analyzed structures."]
[]
["hetgroup ID","hetgroup accepted","parent standard residue","hetgroup name","hetgroup synonym"]
["Nucleotide modifications judged as simple and accepted for analysis"]
["AD2","Y","A","2'-DEOXY-ADENOSINE-3'-5'-DIPHOSPHATE","2'-deoxyadenosine 3',5'-bis(dihydrogen phosphate)"]
["A3P","Y","A","ADENOSINE-3'-5'-DIPHOSPHATE","adenosine 3',5'-bis(dihydrogen phosphate)"]
["A5L","Y","G","9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-9H-purin-6-amine"]
["BRU","Y","T","5-bromo-2'-deoxyuridine 5'-(dihydrogen phosphate)"]
["CBR","Y","C","5-bromo-2'-deoxycytidine 5'-(dihydrogen phosphate)"]
["C38","Y","C","2'-deoxy-5-iodocytidine 5'-(dihydrogen phosphate)"]
["DOC","Y","C","2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE","[(2S,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen phosphate"]
["FMG","Y","G","2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7-methyl-6-oxo-6,9-dihydro-1H-purin-7-ium"]
["MA7","Y","A","1N-METHYLADENOSINE-5'-MONOPHOSPHATE","2'-deoxy-1-methyladenosine 5'-(dihydrogen phosphate)"]
["ME6","Y","C","[(2R,3S,5R)-5-(4-azanyl-3-methyl-2-oxo-pyrimidin-3-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"]
["MG1","Y","G","2'-deoxy-1-methylguanosine 5'-(dihydrogen phosphate)"]
["OMC","Y","C","O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE","2'-O-methylcytidine 5'-(dihydrogen phosphate)"]
["O2G","Y","G","2'-DEOXY-N,N-DIMETHYL-5'-O-[OXIDO(OXO)PHOSPHONIO]GUANOSINE","2'-deoxy-N,N-dimethylguanosine 5'-(dihydrogen phosphate)"]
["PPW","Y","G","7-DEAZA-8-AZA-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE","6-amino-1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one"]
["P2U","Y","T","2'-DEOXY-PSEUDOURIDINE-5'MONOPHOSPHATE","(1R)-1,4-anhydro-2-deoxy-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-erythro-pentitol"]
["TTD","Y","T","2'-DEOXYURIDINE 5'-MONOPHOSPHATE","2'-deoxy-5'-uridylic acid"]
["UMP","Y","T","2'-DEOXYURIDINE 5'-MONOPHOSPHATE","2'-deoxy-5'-uridylic acid"]
["Z","Y","C","1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)pyrimidin-2(1H)-one"]
["1AP","Y","A","2-amino-2'-deoxyadenosine 5'-(dihydrogen phosphate)"]
["2FI","Y","G","2'-fluoro-2'-deoxyinosine"]
["2PR","Y","G","2-AMINO-9-[2-DEOXYRIBOFURANOSYL]-9H-PURINE-5'-MONOPHOSPHATE","9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine"]
["5CM","Y","C","5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE","2'-deoxy-5-methylcytidine 5'-(dihydrogen phosphate)"]
["5IU","Y","T","5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE","2'-deoxy-5-iodouridine 5'-(dihydrogen phosphate)"]
["5PY","Y","T","1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-5-methylpyrimidin-2(1H)-one"]
["6MA","Y","A","N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE","2'-deoxy-N-methyladenosine 5'-(dihydrogen phosphate)"]
["6OG","Y","G","6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE","9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-methoxy-9H-purin-2-amine"]
["7GU","Y","G","7-DEAZA-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE","2-amino-7-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one"]
["8OG","Y","G","8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE","2'-deoxy-8-oxoguanosine 5'-(dihydrogen phosphate"]
["AAB","Y","-","2-DEOXY-5-PHOSPHORIBOSE GROUP","2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranose"]
["PST","Y","T","THYMIDINE-5'-THIOPHOSPHATE","5'-O-thiophosphonothymidine"]
["SPT","Y","T","5'-THIO-THYMIDINE PHOSPHONIC ACID","5'-S-phosphono-5'-thiothymidine"]
["TGP","Y","G","5'-THIO-2'-DEOXY-GUANOSINE PHOSPHONIC ACID","2'-deoxy-5'-S-phosphono-5'-thioguanosine"]
["TPC","Y","C","5'-THIO-2'-DEOXY-CYTOSINE PHOSPHONIC ACID","2'-deoxy-5'-S-phosphono-5'-thiocytidine"]
["TSP","Y","T","3'-THIO-THYMIDINE-5'-PHOSPHATE","3'-thiothymidine 5'-(dihydrogen phosphate)"]
["UPS","Y","T","2'-deoxy-5'-O-thiophosphonouridine"]
["US1","Y","T","2'-deoxy-3'-thiouridine 5'-(dihydrogen phosphate)"]
["4PC","Y","-","3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-methyl-3,7-dihydro-2H-pyrrolo[2,3-d]pyrimidin-2-one"]
["5HU","Y","T","5-HYDROXYMETHYLURIDINE-2'-DEOXY-5'-MONOPHOSPHATE","2'-deoxy-5-(hydroxymethyl)uridine 5'-(dihydrogen phosphate)"]
["Nucleotide modifications judged as significantly changing DNA and not accepted for analysis"]
["DFT","N","T","1-[2-DEOXYRIBOFURANOSYL]-2,4-DIFLUORO-5-METHYL-BENZENE-5'MONOPHOSPHATE","(1R)-1,4-anhydro-2-deoxy-1-(2,4-difluoro-5-methylphenyl)-5-O-phosphono-D-erythro-pentitol"]
["E1X","N","G","2'-deoxy-1-ethylxanthosine 5'-(dihydrogen phosphate)"]
["AFG","N","G","N-(5'-PHOSPHO-2'-DEOXYGUANOSIN-8-YL)-2-AMINOFLUORENE"]
["ASU","N",null,"4'-THIO-2'4'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE","2-deoxy-5-O-phosphono-4-thio-alpha-D-erythro-pentofuranose"]
["ATM","N","T","3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE","3'-azido-3'-deoxythymidine 5'-(dihydrogen phosphate)"]
["A1P","N",null,"9-{2-DEOXY-5-O-[HYDROXY(OXIDO)PHOSPHINO]-BETA-L-ERYTHRO-PENTOFURANOSYL}-9H-PURIN-2-AMINE"]
["BZG","N","A","6-(benzyloxy)-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine"]
["CDW","N",null,"(4R)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1,3-diazabicyclo[2.2.0]hex-5-en-2-one"]
["DDX","N",null,"2',3'-DEHYDRO-2',3'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE","[(2S,5S)-5-hydroxy-2,5-dihydrofuran-2-yl]methyl dihydrogen phosphate"]
["DRZ","N",null,"3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE","2-deoxy-5-O-phosphono-D-erythro-pentose"]
["FOX","N",null,"[(1R,2S,4R)-4-{[2-amino-5-(formylamino)-6-oxo-3,6-dihydropyrimidin-4-yl]amino}-2-hydroxycyclopentyl]methyl dihydrogen phosphate"]
["GX1","N","G","2'-deoxy-5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}guanosine"]
["G35","N",null,"(5R)-5-carbamimidamido-1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)imidazolidine-2,4-dione"]
["HCX","N","?","(SOUTH) BICYCLO[3.1.0]HEXANE","[(1R,2R,3S,5R)-3-hydroxybicyclo[3.1.0]hex-2-yl]methyl hydrogen (S)-phosphonate"]
["HPD","N",null,"1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE","2-deoxy-5-O-phosphono-D-erythro-pentitol"]
["CH2","N","?","METHYLENE GROUP"]
["MRG","N","G","N2-(3-MERCAPTOPROPYL)-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE","2'-deoxy-N-(3-sulfanylpropyl)guanosine 5'-(dihydrogen phosphate)"]
["M1G","N","A","3-(2-DEOXY-BETA-D-RIBOFURANOSYL)-PYRIDO[5,6-A]-PURINE-10-ONE-5'-MONOPHOSPHATE","3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)pyrimido[1,2-a]purin-10(3H)-one"]
["OGX","N","G","2'-deoxy-5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}-8-oxoguanosine"]
["ORP","N",null,"2-DEOXY-5-PHOSPHONO-RIBOSE","2-deoxy-5-O-phosphono-alpha-D-erythro-pentofuranose"]
["O2C","N","C","3'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE","3'-deoxy-5'-cytidylic acid"]
["P","N","G","2'-DEOXY-N1,N2-PROPANO GUANOSINE MONOPHOSPHATE","3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-5,6,7,8-tetrahydropyrimido[1,2-a]purin-10(3H)-one"]
["PED","N",null,"PENTANE-3,4-DIOL-5-PHOSPHATE","1,2-dideoxy-5-O-phosphono-D-erythro-pentitol"]
["PXZ","N","?","PHENOXAZINE","2-amino-4,6-dimethyl-3-oxo-3H-phenoxazine-1,9-dicarbaldehyde"]
["SOS","N",null,"[(1R,2S,4R)-4-({2-amino-5-[benzyl(formyl)amino]-6-oxo-1,6-dihydropyrimidin-4-yl}amino)-2-hydroxycyclopentyl]methyl dihydrogen phosphate"]
["TCP","N","T","5'-METHYLTHYMIDINE","5'-O-methylthymidine"]
["TDY","N","T","5-(methylamino)thymidine 5'-(dihydrogen phosphate)"]
["TFO","N","A","TENOFOVIR","{[(1R)-2-(6-amino-9H-purin-9-yl)-1-methylethoxy]methyl}phosphonic acid"]
["URT","N","A","({[(2R,5R)-5-(6-amino-9H-purin-9-yl)-4-fluoro-2,5-dihydrofuran-2-yl]oxy}methyl)phosphonic acid"]
["USM","N","T","2'-S-methyl-2'-thiouridine 5'-(dihydrogen phosphate)"]
["XCY","N","C","N-[4-(aminomethyl)benzyl]-2'-deoxycytidine 5'-(dihydrogen phosphate)"]
["YRR","N",null,"[(2R,3S)-3-hydroxypyrrolidin-2-yl]methyl dihydrogen phosphate"]
["2EG","N","G","2'-deoxy-N-ethylguanosine 5'-(dihydrogen phosphate)"]
["2FE","N",null,"3-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-3H-imidazo[2,1-i]purine"]
["3DR","N",null,"1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE","1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol"]
["4MF","N",null,"1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-4-methyl-1H-indole"]
["4SC","N","C","4'-THIO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE GROUP","2'-deoxy-5-methyl-5'-O-[oxido(oxo)phosphonio]-4'-thiocytidine"]
["5HT","N","T","5-hydroxythymidine"]
["6MI","N",null,"6-METHYL-8-(2-DEOXY-RIBOFURANOSYL)ISOXANTHOPTERIDINE","2-amino-8-(2-deoxy-5-O-phosphono-beta-D-threo-pentofuranosyl)-6-methylpteridine-4,7(1H,8H)-dione"]
["8FG","N","G","N-(5'-PHOSPHO-2'-DEOXYGUANOSIN-8-YL)-2-ACETYLAMINOFLUORENE"]
["9AC","N","?","9-ACRIDINECARBONYL","acridine-9-carbaldehyde"]
["CTG","N","T","{tetragonal ring} (5R,6S)-5,6-DIHYDRO-5,6-DIHYDROXYTHYMIDINE-5'-MONOPHOSPHATE","5,6-dihydroxythymidine 5'-(dihydrogen phosphate)"]
["C36","N","C","{tetragonal ring} 5-METHYL-5-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE","2'-deoxy-5-fluoro-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate)"]
["C49","N","C","{tetragonal ring} 2'-deoxy-5-fluoro-5-methyl-6-thioxocytidine 5'-(dihydrogen phosphate)"]
["64P","N","T","{tetragonal ring} 5-aminothymidine 5'-(dihydrogen phosphate)"]
["64T","N","T","{tetragonal ring} 5-hydroxythymidine 5'-(dihydrogen phosphate)"]
["Amino acid modifications judged as simple and accepted for analysis"]
["CME","Y","C","S,S-(2-HYDROXYETHYL)THIOCYSTEINE","3-[(2-hydroxyethyl)disulfanyl]-L-alanine"]
["DVA","Y","V","D-valine"]
["ML3","Y","C","2-{[(2R)-2-amino-2-carboxyethyl]sulfanyl}-N,N,N-trimethylethanaminium"]
["MSE","Y",null,"SELENOMETHIONINE"]
["MVA","Y","V","N-methyl-L-valine"]
["M2L","Y","V","(2R)-2-amino-3-(2-dimethylaminoethylsulfanyl)propanoic acid","S-[2-(dimethylamino)ethyl]-L-cysteine"]
["OCS","Y","A","CYSTEINESULFONIC ACID","3-sulfo-L-alanine"]
["PCA","Y","P","PYROGLUTAMIC ACID","5-oxo-L-proline"]
["PTR","Y","Y","O-PHOSPHOTYROSINE","O-phosphono-L-tyrosine"]
["SAR","Y","G","SARCOSINE","N-methylglycine"]
["SEP","Y","S","PHOSPHOSERINE","O-phosphono-L-serine"]
["SMC","Y","C","S-METHYLCYSTEINE","S-methyl-L-cysteine"]
[]
["Hetgroup codes observed in PDB files"]
[null,"PDB"]
["1AP","1ZAY"]
["1AP","3C29"]
["2EG","3EPG"]
["2EG","3EPI"]
["2FE","3CWU"]
["2FI","3CWS"]
["2FI","3CWT"]
["2PR","1U1P"]
["2PR","1U1R"]
["2PR","2IBS"]
["2PR","2IBT"]
["3DR","1DEW"]
["3DR","1DE8"]
["3DR","1DE9"]
["3DR","1FN7"]
["3DR","1IXY"]
["3DR","1M5R"]
["3DR","1N3A"]
["3DR","1N39"]
["3DR","1N48"]
["3DR","1N56"]
["3DR","1PHJ"]
["3DR","1PH5"]
["3DR","1PJJ"]
["3DR","1PM5"]
["3DR","1P5W"]
["3DR","1P59"]
["3DR","1QUM"]
["3DR","1Y6F"]
["3DR","2DTU"]
["3DR","2IBT"]
["3DR","2IH5"]
["3DR","2NP6"]
["3DR","2NP7"]
["3DR","2NQJ"]
["3DR","2NQ9"]
["3DR","2OFI"]
["3DR","2OYQ"]
["3DR","2OZM"]
["3DR","2P5G"]
["3DR","2P5O"]
["3DR","2P66"]
["3DR","2RBA"]
["3DR","3A46"]
["3DR","3EI2"]
["3DR","3G6V"]
["3DR","3G6X"]
["3DR","3G6Y"]
["3DR","3ISC"]
["3DR","3ISD"]
["3DR","3K5L"]
["3DR","3K5M"]
["3DR","3K5N"]
["3DR","9MHT"]
["4MF","2OXM"]
["4MF","2OYT"]
["4PC","2IH4"]
["4PC","2NP7"]
["4SC","6MHT"]
["5CM","1BSU"]
["5CM","1DCT"]
["5CM","1ODG"]
["5CM","10MH"]
["5CM","2C7O"]
["5CM","2C7P"]
["5CM","2C7Q"]
["5CM","2C7R"]
["5CM","2UYC"]
["5CM","2UYH"]
["5CM","2UZ4"]
["5CM","2ZKD"]
["5CM","2ZKE"]
["5CM","2ZKF"]
["5CM","2ZO0"]
["5CM","2ZO1"]
["5CM","3CLZ"]
["5CM","3C2I"]
["5CM","3FDE"]
["5CM","3F8I"]
["5CM","3F8J"]
["5CM","4MHT"]
["5CM","5MHT"]
["5CM","6MHT"]
["5HT","1EHL"]
["5HU","1Y6G"]
["5HU","1Y8Z"]
["5IU","1AIS"]
["5IU","1A31"]
["5IU","1A6Y"]
["5IU","1BF4"]
["5IU","1CKT"]
["5IU","1GA5"]
["5IU","1JJ6"]
["5IU","1JJ8"]
["5IU","1K4S"]
["5IU","1K61"]
["5IU","1LEI"]
["5IU","1NH2"]
["5IU","1P59"]
["5IU","1SRS"]
["5IU","1ZME"]
["5IU","2BSQ"]
["5IU","2H1O"]
["5IU","2IRF"]
["5IU","2NLL"]
["5IU","2Q2K"]
["5IU","2RAM"]
["5IU","3HOT"]
["5PY","2IH2"]
["5PY","3CVU"]
["5PY","3CVV"]
["5PY","3CVW"]
["5PY","3CVX"]
["5PY","3EI1"]
["64P","2WB2"]
["64T","1KEG"]
["64T","3CVU"]
["64T","3CVV"]
["64T","3CVW"]
["64T","3CVX"]
["64T","3EI1"]
["6MA","1G38"]
["6MA","1J3E"]
["6MA","1LRR"]
["6MA","2AOR"]
["6MA","2IBS"]
["6MA","2IBT"]
["6MA","2IH2"]
["6MA","2IH4"]
["6MA","2IH5"]
["6MA","2JG3"]
["6MA","2NP6"]
["6MA","2NP7"]
["6MA","3FMT"]
["6MI","1PGZ"]
["6MI","1PO6"]
["6OG","1T38"]
["6OG","2HHQ"]
["6OG","2HHS"]
["6OG","2HHT"]
["6OG","2HHU"]
["6OG","2HHV"]
["6OG","2HHW"]
["6OG","2HHX"]
["6OG","2HVH"]
["6OG","2HW3"]
["6OG","2J6S"]
["6OG","2J6T"]
["6OG","2J6U"]
["6OG","3GX4"]
["7GU","1U1M"]
["7GU","1YQM"]
["8FG","1X9M"]
["8OG","1EBM"]
["8OG","1LPQ"]
["8OG","1MQ2"]
["8OG","1MQ3"]
["8OG","1N3C"]
["8OG","1Q9Y"]
["8OG","1RRQ"]
["8OG","1RRS"]
["8OG","1R2Y"]
["8OG","1TKD"]
["8OG","1TK0"]
["8OG","1TK5"]
["8OG","1TK8"]
["8OG","1U4B"]
["8OG","1U45"]
["8OG","1U47"]
["8OG","1U48"]
["8OG","1U49"]
["8OG","1VRL"]
["8OG","1YQR"]
["8OG","1ZYQ"]
["8OG","2ASD"]
["8OG","2ASJ"]
["8OG","2ASL"]
["8OG","2C2D"]
["8OG","2C2E"]
["8OG","2C2R"]
["8OG","2C22"]
["8OG","2C28"]
["8OG","2F5Q"]
["8OG","2F5S"]
["8OG","2I5W"]
["8OG","2NOB"]
["8OG","2NOE"]
["8OG","2NOF"]
["8OG","2NOH"]
["8OG","2NOL"]
["8OG","2NOZ"]
["8OG","2UVR"]
["8OG","2UVU"]
["8OG","2UVV"]
["8OG","2UVW"]
["8OG","2W7O"]
["8OG","3CVS"]
["8OG","3CVT"]
["8OG","3CWA"]
["8OG","3CW7"]
["8OG","3FSQ"]
["8OG","3GII"]
["8OG","3GIJ"]
["8OG","3GIK"]
["8OG","3GIL"]
["8OG","3GIM"]
["8OG","3GO8"]
["8OG","3GPP"]
["8OG","3GPU"]
["8OG","3GPY"]
["8OG","3GP1"]
["8OG","3GQ3"]
["8OG","3GQ4"]
["8OG","3G0Q"]
["8OG","3IN5"]
["8OG","3I0W"]
["8OG","3I0X"]
["8OG","3KNT"]
["9AC","1G3X"]
["A1P","2C7O"]
["A1P","2C7P"]
["A1P","2C7Q"]
["A1P","2C7R"]
["A3P","1OUQ"]
["A3P","1Q3V"]
["A5L","3G0Q"]
["AAB","1MTL"]
["AAB","1MWI"]
["AAB","2OYT"]
["AAB","2SSP"]
["AD2","1L2B"]
["AFG","1X9S"]
["AFG","1X9W"]
["ASU","1EMJ"]
["ATM","1N5Y"]
["ATM","1N6Q"]
["BRU","1AWC"]
["BRU","1A35"]
["BRU","1DP7"]
["BRU","1FYL"]
["BRU","1JXL"]
["BRU","1KDH"]
["BRU","1K3X"]
["BRU","1R71"]
["BRU","1WTP"]
["BRU","1ZET"]
["BRU","2FCC"]
["BRU","2W36"]
["BRU","2W7N"]
["BRU","3BS1"]
["BRU","3H4B"]
["BRU","3H4D"]
["BRU","3H40"]
["BRU","3KDE"]
["BZG","2JEF"]
["BZG","2JEG"]
["BZG","2JEI"]
["BZG","2JEJ"]
["C36","1MHT"]
["C38","1MEY"]
["C38","2PVI"]
["C49","1DCT"]
["CBR","1AWC"]
["CBR","1IJW"]
["CDW","2WQ6"]
["CH2","1HAO"]
["CH2","1HAP"]
["CH2","1HUT"]
["CME","1A1V"]
["CME","1Y8Z"]
["CTG","2DY4"]
["DDX","1M3H"]
["DFT","2VA2"]
["DFT","2VA3"]
["DFT","2V9W"]
["DFT","3I8D"]
["DOC","1BPY"]
["DOC","1IG9"]
["DOC","1MQ3"]
["DOC","1Q9Y"]
["DOC","1TKD"]
["DOC","1T3N"]
["DOC","1X9N"]
["DOC","1ZET"]
["DOC","2AGP"]
["DOC","2AGQ"]
["DOC","2ALZ"]
["DOC","2AQ4"]
["DOC","2ASL"]
["DOC","2C2R"]
["DOC","2DPI"]
["DOC","2DPJ"]
["DOC","2FLL"]
["DOC","2FLN"]
["DOC","2FLP"]
["DOC","2FMP"]
["DOC","2ISO"]
["DOC","2ISP"]
["DOC","2I9G"]
["DOC","2JEF"]
["DOC","2JEG"]
["DOC","2KTQ"]
["DOC","2PXI"]
["DOC","2PYJ"]
["DOC","2W8K"]
["DOC","2W8L"]
["DOC","2W9A"]
["DOC","2W9B"]
["DOC","2W9C"]
["DOC","3BJY"]
["DOC","3CFP"]
["DOC","3CFR"]
["DOC","3EPG"]
["DOC","3EPI"]
["DOC","3GIK"]
["DOC","3GQC"]
["DOC","3G6V"]
["DOC","3G6X"]
["DOC","3G6Y"]
["DOC","3H4B"]
["DOC","3H4D"]
["DOC","3H40"]
["DOC","3IAY"]
["DOC","3IN5"]
["DOC","3KHH"]
["DOC","3KJV"]
["DOC","3KK1"]
["DOC","3KK2"]
["DOC","3KTQ"]
["DOC","3K5A"]
["DOC","3K5L"]
["DOC","3K57"]
["DOC","3K58"]
["DOC","3K59"]
["DOC","4KTQ"]
["DRZ","1M3Q"]
["DVA","1MNV"]
["E1X","1T39"]
["FMG","3D4V"]
["FOX","1TDZ"]
["FOX","1XC8"]
["G35","3L8B"]
["GX1","3JR4"]
["HCX","1SKM"]
["HPD","1L1T"]
["HPD","1L2C"]
["HPD","1L2D"]
["HPD","1RRS"]
["HPD","1VRL"]
["M1G","2V4Q"]
["M1G","2V4R"]
["M2L","3C1C"]
["MA7","2FDF"]
["MA7","2FDG"]
["MA7","2FDH"]
["MA7","2FDI"]
["MA7","2FDK"]
["MA7","2FD8"]
["MA7","3BIE"]
["MA7","3BI3"]
["MA7","3BTY"]
["MA7","3BUC"]
["MA7","3I2O"]
["ME6","3I3M"]
["ME6","3I49"]
["MG1","3KHC"]
["ML3","3C1B"]
["MRG","1N5Y"]
["MRG","1N6Q"]
["MRG","1T03"]
["MRG","1T05"]
["MRG","3JSM"]
["MRG","3JYT"]
["MSE","1DFM"]
["MSE","1D2I"]
["MSE","1EWQ"]
["MSE","1E3M"]
["MSE","1FW6"]
["MSE","1FYK"]
["MSE","1FYL"]
["MSE","1H0M"]
["MSE","1JE8"]
["MSE","1JX4"]
["MSE","1J1V"]
["MSE","1KFV"]
["MSE","1LWT"]
["MSE","1L3L"]
["MSE","1OMH"]
["MSE","1PV4"]
["MSE","1P8K"]
["MSE","1QX0"]
["MSE","1RC8"]
["MSE","1RIO"]
["MSE","1RPZ"]
["MSE","1RRC"]
["MSE","1RZR"]
["MSE","1S6M"]
["MSE","1U8B"]
["MSE","1X9N"]
["MSE","1ZG1"]
["MSE","1ZG5"]
["MSE","1ZM5"]
["MSE","1ZX4"]
["MSE","1Z19"]
["MSE","1Z63"]
["MSE","2AXY"]
["MSE","2CDM"]
["MSE","2DY4"]
["MSE","2FO1"]
["MSE","2F03"]
["MSE","2HZV"]
["MSE","2OA8"]
["MSE","2ODI"]
["MSE","2OFI"]
["MSE","2PQU"]
["MSE","2P2R"]
["MSE","2P5G"]
["MSE","2P5O"]
["MSE","2QOJ"]
["MSE","2YVH"]
["MSE","3A5T"]
["MSE","3BM3"]
["MSE","3C2I"]
["MSE","3DNV"]
["MSE","3D1N"]
["MSE","3GV5"]
["MSE","3HZI"]
["MSE","3H0D"]
["MVA","1MNV"]
["O2C","2BCV"]
["O2G","2W9A"]
["O2G","2W9B"]
["O2G","2W9C"]
["OCS","2VOA"]
["OGX","3JR5"]
["OMC","2OWO"]
["ORP","1SSP"]
["ORP","2DDG"]
["ORP","2DEM"]
["ORP","2DP6"]
["ORP","4SKN"]
["P","2R8G"]
["P","2R8H"]
["P","2R8I"]
["P","3BJY"]
["P2U","1EMH"]
["PCA","1M07"]
["PCA","1OJ8"]
["PCA","2I5S"]
["PED","1HU0"]
["PED","1K3W"]
["PED","1K3X"]
["PED","1K82"]
["PED","1LWV"]
["PED","1LWW"]
["PED","1LWY"]
["PED","1L1Z"]
["PED","1ORN"]
["PED","1ORP"]
["PED","2EA0"]
["PED","2FCC"]
["PED","2OPF"]
["PED","2OQ4"]
["PPW","1YQL"]
["PST","1KRP"]
["PST","1KSP"]
["PTR","1A31"]
["PTR","1BF5"]
["PTR","1BG1"]
["PTR","1K4S"]
["PTR","1K4T"]
["PTR","1M6X"]
["PTR","1P4E"]
["PTR","1P7D"]
["PTR","1RRJ"]
["PTR","1RR8"]
["PTR","1SC7"]
["PTR","1SEU"]
["PTR","1TL8"]
["PTR","1T8I"]
["PTR","1Z19"]
["PTR","2H7F"]
["PXZ","1MNV"]
["SAR","1MNV"]
["SEP","1RZR"]
["SEP","1ZVV"]
["SMC","1U8B"]
["SOS","3C58"]
["SPT","1K4S"]
["TCP","1TEZ"]
["TCP","2VTB"]
["TDY","2WQ6"]
["TDY","2WQ7"]
["TFO","1T03"]
["TGP","1K4T"]
["TGP","1SC7"]
["TGP","1SEU"]
["TGP","1T8I"]
["TPC","1TL8"]
["TSP","1EON"]
["TSP","1EO3"]
["TSP","1EO4"]
["TTD","1SKS"]
["TTD","1SKW"]
["TTD","1SL0"]
["TTD","1SL1"]
["TTD","1SL2"]
["UMP","1NZB"]
["UMP","1OUQ"]
["UMP","1Q3U"]
["UMP","1Q3V"]
["UMP","1R2Z"]
["UPS","3G3C"]
["UPS","3G3Y"]
["UPS","3G4T"]
["URT","3KK3"]
["US1","2KFN"]
["US1","2KFZ"]
["USM","3EY1"]
["XCY","1YFH"]
["YRR","1BNK"]
["YRR","1F6O"]
["Z","1M0E"]
["Z","2WB2"]
["Z","2WQ7"]

{"sheet":"Table S3","index":2,"n_rows":21,"n_cols":11,"rows_kept":21,"cut":false,"hidden":false,"merged":[[0,0,0,10]]}
["Table S3. Nucleotide conformers (ntC) used for the assignment of 57,797 steps from the 1475 analyzed protein/DNA complexes. After the assignment was completed, ntCs 119+121+122 were pooled into one group of conformers labeled 155 that all have the first or second base in the syn-orientation. Z-DNA conformers 123+124+126 were not considered in the analyses. In total, thirteen conformational classes plus a class of undefined conformations were analyzed. The labeling of ntCs is taken from the previous work (45). "]
[]
["ntC","Description","δ","ε","ζ","α+1","β+1","γ+1","δ+1","χ","χ+1"]
[8,"the most frequent A-DNA",83,205,287,294,174,54,83,199,203]
[13,"A-DNA, BI-like χ ",89,201,275,294,162,54,89,244,244]
[19,"A-DNA, α+1/γ+1 crank",84,194,290,149,192,182,88,205,188]
[41,"A-to-B, δ > C3'-, δ+1 C2'-endo",90,196,280,299,179,55,142,222,256]
[32,"BI-to-A, δ+1 O4'-endo ",129,186,264,295,170,52,98,247,233]
[109,"BII-to-A, δ+1 > C3'-endo ",142,213,181,297,139,52,90,273,207]
[110,"as 109 plus α+1/γ+1 crank, high β+1",146,257,186,60,224,196,90,260,200]
[54,"the most frequent BI variant",136,183,259,303,181,44,138,252,259]
[50,"BI variant ",129,181,265,300,177,50,123,246,245]
[86,"the most frequent BII variant",140,201,216,314,154,46,140,262,253]
[96,"BII variant",143,245,170,297,141,46,141,271,257]
[116,"BI, α+1/γ+1 crank, α/γ normal",140,194,247,31,197,296,150,253,253]
[155,"119: 5'-mismatches, BI, χ syn, α/γ crank",144,189,266,303,167,53,138,70,259]
[155,"121: 3’-mismatches, δ O4'-endo, χ+1 syn",99,209,278,295,174,54,128,243,67]
[155,"122: as 121 plus α+1/γ+1 crank",136,196,225,33,187,295,145,257,70]
[123,"Z, Y/R step",147,264,76,66,186,179,95,205,61]
[124,"Z, R/Y step, ZI",96,242,294,209,231,55,144,63,205]
[126,"Z, R/Y step, ZII",95,187,62,169,162,44,144,58,213]

{"sheet":"Table S4","index":3,"n_rows":72,"n_cols":51,"rows_kept":72,"cut":false,"hidden":false,"merged":[[64,4,64,6],[64,7,64,9],[64,10,64,12],[0,0,0,9],[64,45,65,45],[64,34,64,36],[64,40,65,40],[64,41,65,41],[64,42,65,42],[64,43,65,43],[64,44,65,44],[64,19,64,21],[64,22,64,24],[64,28,64,30],[64,31,64,33],[64,16,64,18],[56,45,57,45],[63,4,63,12],[63,16,63,24],[63,28,63,36],[2,28,2,36],[63,40,63,41],[63,42,63,43],[63,44,63,45],[56,34,56,36],[56,40,57,40],[56,41,57,41],[56,42,57,42],[56,43,57,43],[56,44,57,44],[56,19,56,21],[56,22,56,24],[56,28,56,30],[56,31,56,33],[56,4,56,6],[56,7,56,9],[56,10,56,12],[56,16,56,18],[48,45,49,45],[55,4,55,12],[55,16,55,24],[55,28,55,36],[55,40,55,41],[55,42,55,43],[55,44,55,45],[48,34,48,36],[48,40,49,40],[48,41,49,41],[48,42,49,42],[48,43,49,43],[48,44,49,44],[48,19,48,21],[48,22,48,24],[48,28,48,30],[48,31,48,33],[48,4,48,6],[48,7,48,9],[48,10,48,12],[48,16,48,18],[27,45,28,45],[47,4,47,12],[47,16,47,24],[47,28,47,36],[47,40,47,41],[47,42,47,43],[47,44,47,45],[27,34,27,36],[27,40,28,40],[27,41,28,41],[27,42,28,42],[27,43,28,43],[27,44,28,44],[27,19,27,21],[27,22,27,24],[27,28,27,30],[27,31,27,33],[27,4,27,6],[27,7,27,9],[27,10,27,12],[27,16,27,18],[3,45,4,45],[26,4,26,12],[26,16,26,24],[26,28,26,36],[26,40,26,41],[26,42,26,43],[26,44,26,45],[3,34,3,36],[3,40,4,40],[3,41,4,41],[3,42,4,42],[3,43,4,43],[3,44,4,44],[3,19,3,21],[3,22,3,24],[3,28,3,30],[3,31,3,33],[3,4,3,6],[2,42,2,43],[2,44,2,45],[3,7,3,9],[3,10,3,12],[3,16,3,18],[2,4,2,12],[2,16,2,24],[2,40,2,41]]}
["Table S4. Numbers of contacts to the analyzed groups of structures."]
[]
[{"$nulls":4},"Various types of residue-to-residue contacts",{"$nulls":11},"Contact-to-contact ratios",{"$nulls":11},"Contacts per residue in contact",{"$nulls":11},"Polar contacts",null,"HOH contacts",null,"All+HOH ",{"$nulls":5},1]
["Residue2residue",null,"res2res","PDB","Contacts Polar",null,null,"Contacts HOH",null,null,"Contacts vdW",null,null,null,"res2res",null,"HOH/Polar",null,null,"HOH/vdW",null,null,"polar/vdW",null,null,null,"res2res",null,"Contacts vdW",null,null,"Contacts Polar",null,null,"Contacts HOH",null,null,null,"res2res",null,"assig aa/all","assig nt/all","assig aa/all","assig nt/all","assig aa/all","assig nt/all",null,"res2res",null,null,2]
[{"$nulls":4},"all","aa","nt","all","aa","nt","all","aa","nt",null,null,null,"all","aa","nt","all","aa","nt","all","aa","nt",null,null,null,"all","aa","nt","all","aa","nt","all","aa","nt",{"$nulls":13},3]
["Unique","Que-R1+R2","Q28",305,8193,7130,4811,6423,4817,3253,7841,6413,4704,null,"Q28",null,0.78396191871109489,0.67559607293127633,0.67615880274371232,0.81915571993368197,0.75113051613909243,0.69153911564625847,1.0448922331335289,1.1118041478247309,1.0227465986394557,null,"Q28",{"$nulls":11},"Q28",null,0.87025509581349936,0.58720859270108627,0.74996107737817219,0.50646115522341584,0.69109917065763349,0.38073823151500991,null,"Q28","0.01-2.80",null,4]
["All 1018","Umb-R1+R2","A28",836,21295,18633,12484,16539,12466,8249,20098,16740,12024,null,"A28",null,0.77666118807231743,0.66902806848065266,0.66076578019865428,0.82291770325405511,0.74468339307048981,0.68604457751164338,1.0595581649915415,1.1130824372759858,1.0382568196939455,null,"A28",{"$nulls":11},"A28",null,0.87499413007748295,0.58624090162009856,0.75373359937118323,0.49876050547191486,0.70316318066671146,0.3768915192682763,null,"A28","0.01-2.80",null,8]
["tr. factors","TrF-R1+R2","R28",326,7964,6832,4922,6681,4830,3417,7355,5916,4807,null,"R28",null,0.8389000502260171,0.70696721311475408,0.69422998780983336,0.90836165873555408,0.81643002028397571,0.71083836072394424,1.082800815771584,1.1548343475321163,1.0239234449760766,null,"R28",{"$nulls":11},"R28",null,0.85786037167252638,0.61803114013058769,0.72294566681634487,0.51145038167938928,0.66366992140985948,0.41736127649440341,null,"R28","0.01-2.80",null,16]
["nuclease","Nuc-R1+R2","N28",147,4567,3912,2404,4074,3087,1812,4216,3441,2321,null,"N28",null,0.89205167506021454,0.78911042944785281,0.75374376039933444,0.96631878557874762,0.89712292938099392,0.78069797501077121,1.0832542694497154,1.1368788142981692,1.0357604480827229,null,"N28",{"$nulls":11},"N28",null,0.85657981169257713,0.5263849354061747,0.75773195876288657,0.44477172312223856,0.68753185849729836,0.31471097971250894,null,"N28","0.01-2.80",null,28]
["polymerase","Pol-R1+R2","P28",165,3714,3405,2280,2444,1934,1333,3643,3282,2099,null,"P28",null,0.65805061927840602,0.56798825256975038,0.58464912280701753,0.67087565193521825,0.5892748324192566,0.63506431634111482,1.0194894317869887,1.0374771480804388,1.0862315388280133,null,"P28",{"$nulls":11},"P28",null,0.91680129240710828,0.61389337641357022,0.79132569558101473,0.54541734860883795,0.77525349762546525,0.37491977923244768,null,"P28","0.01-2.80",null,32]
["Unique","Que-R1","Q19",100,2416,2083,1336,2716,2014,1284,2220,1847,1267,null,"Q19",null,1.1241721854304636,0.96687469995199227,0.96107784431137722,1.2234234234234234,1.0904168922577153,1.0134175217048145,1.0882882882882883,1.1277747698971305,1.0544593528018942,null,"Q19",{"$nulls":11},"Q19",null,0.86216887417218546,0.55298013245033117,0.74153166421207661,0.47275405007363769,0.67355666429080541,0.32733428367783324,null,"Q19","0.01-1.90",null,5]
["All 1018","Umb-R1","A19",200,4307,3764,2445,5012,3711,2358,4078,3446,2369,null,"A19",null,1.1636870211283956,0.98591923485653565,0.96441717791411041,1.2290338401177048,1.0769007544979687,0.99535669058674547,1.0561549779303581,1.0922809053975624,1.0320810468552131,null,"A19",{"$nulls":11},"A19",null,0.87392616670536338,0.56768052008358483,0.74042298483639268,0.47047086991221071,0.67994637042712125,0.32934303773223522,null,"A19","0.01-1.90",null,9]
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["Unique","Que-R2","Q98",205,5777,5047,3475,3707,2803,1969,5621,4566,3437,null,"Q98",null,0.64168253418729448,0.55537943332672879,0.56661870503597123,0.6594911937377691,0.61388523872098122,0.57288332848414314,1.0277530688489593,1.1053438458169076,1.011056153622345,null,"Q98",{"$nulls":11},"Q98",null,0.87363683572788642,0.60152328198026661,0.75613703803614785,0.53115727002967361,0.6996524761077324,0.40677671589921804,null,"Q98","1.901-2.80",null,6]
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["polymerase","Pol-R2","P98",133,3115,2843,1902,1881,1515,1052,2972,2669,1735,null,"P98",null,0.60385232744783301,0.5328877945831868,0.55310199789695058,0.63290713324360703,0.56762832521543649,0.60634005763688759,1.0481157469717362,1.0651929561633571,1.0962536023054754,null,"P98",{"$nulls":11},"P98",null,0.91268057784911716,0.61059390048154094,0.80542264752791071,0.55927698032961193,0.78190476190476188,0.38952380952380955,null,"P98","1.901-2.80",null,34]
["Unique","Que-R3","Q33",34,829,704,510,72,60,45,895,705,551,null,"Q33",null,8.6851628468033779E-2,8.5227272727272721E-2,8.8235294117647065E-2,8.0446927374301674E-2,8.5106382978723402E-2,8.1669691470054442E-2,0.92625698324022343,0.99858156028368794,0.925589836660617,null,"Q33",{"$nulls":11},"Q33",null,0.84921592279855251,0.61519903498190587,0.83333333333333337,0.625,0.74378992193044713,0.48899929027679206,null,"Q33","2.801-3.30",null,7]
["All 1018","Umb-R3","A33",182,4787,4156,2997,357,289,218,4966,4010,2986,null,"A33",null,7.4576979318988934E-2,6.9538017324350332E-2,7.2739406072739404E-2,7.1888844140153035E-2,7.2069825436408982E-2,7.3007367716008034E-2,0.96395489327426498,1.0364089775561098,1.0036838580040188,null,"A33",{"$nulls":11},"A33",null,0.86818466680593276,0.62607060789638602,0.80952380952380953,0.61064425770308128,0.75448948178553099,0.48512057465366853,null,"A33","2.801-3.30",null,11]
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["polymerase","Pol-R3","P33",22,455,417,297,54,47,35,509,460,295,null,"P33",null,0.11868131868131868,0.11270983213429256,0.11784511784511785,0.10609037328094302,0.10217391304347827,0.11864406779661017,0.89390962671905694,0.90652173913043477,1.006779661016949,null,"P33",{"$nulls":11},"P33",null,0.91648351648351645,0.65274725274725276,0.87037037037037035,0.64814814814814814,0.84320987654320989,0.4802469135802469,null,"P33","2.801-3.30",null,35]
[]
[{"$nulls":4},"Various types of atom-to-atom contacts",{"$nulls":11},"Contact-to-contact ratios",{"$nulls":23},"Polar contacts",null,"HOH contacts",null,"All+HOH ",{"$nulls":5},1]
["Atom2atom",null,"at2at","PDB","Contacts Polar",null,null,"Contacts HOH",null,null,"Contacts vdW",null,null,null,"at2at",null,"HOH/Polar",null,null,"HOH/vdW",null,null,"polar/vdW",null,null,null,"at2at",null,"Contacts vdW",null,null,"Contacts Polar",null,null,"Contacts HOH",null,null,null,"at2at",null,"assig aa/all","assig nt/all","assig aa/all","assig nt/all","assig aa/all","assig nt/all",null,"atom2atom",null,null,2]
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["tr. factors","TrF-R2","R98",255,8261,7542,6821,11296,6795,5034,9315,7369,7470,null,"R98",null,1.3673889359641689,0.90095465393794749,0.7380149538190881,1.2126677402039721,0.92210612023341021,0.67389558232931723,0.88684916800858826,1.0234767268286062,0.91311914323962518,null,"R98",null,1.5265486725663717,1.5146968139773895,1.8944965762110069,1.268775917677776,1.3482302466928853,1.681706114398422,2.3671416596814754,1.9593425605536332,2.0314769975786926,null,"R98",null,0.91296453213896622,0.82568696283742893,0.60154036827195467,0.44564447592067991,0.64810099724167192,0.55032180493669991,null,"R98","1.901-2.80",null,70]
["nuclease","Nuc-R2","N98",101,3954,3676,3300,5643,3412,2662,4474,3617,3626,null,"N98",null,1.4271623672230653,0.92818280739934711,0.80666666666666664,1.2612874385337505,0.9433231960188001,0.73414230557087701,0.88377291014751902,1.0163118606580039,0.91009376723662438,null,"N98",null,1.5058902726354764,1.4854209445585216,2.1634844868735081,1.2302426882389546,1.3386744355426075,1.9119351100811124,2.1032426388371226,1.6807881773399014,2.2201834862385321,null,"N98",null,0.92969145169448664,0.83459787556904397,0.60464292043239409,0.47173489278752434,0.6648371752652763,0.55565312843029635,null,"N98","1.901-2.80",null,82]
["polymerase","Pol-R2","P98",133,4061,3829,2919,4092,2530,2006,4793,3916,3676,null,"P98",null,1.0076335877862594,0.66074693131365891,0.68722165125042822,0.85374504485708325,0.6460674157303371,0.54570184983677916,0.84727727936574171,0.97778345250255361,0.79406964091403698,null,"P98",null,1.6127187079407805,1.4672161858373922,2.1187319884726223,1.3036918138041733,1.3468167428772424,1.5347003154574133,2.1754385964912282,1.66996699669967,1.9068441064638784,null,"P98",null,0.94287121398670282,0.71878847574489046,0.61827956989247312,0.49022482893450636,0.71774507513820762,0.5416180020244491,null,"P98","1.901-2.80",null,86]
["All 1018","Umb-R3","A33",182,6079,5478,4891,942,504,408,7988,6331,6148,null,"A33",null,0.15495969731863793,9.2004381161007662E-2,8.3418523819259863E-2,0.11792689033550326,7.9608276733533406E-2,6.6363044892648021E-2,0.76101652478718074,0.86526615068709523,0.79554326610279769,null,"A33",null,1.6085380587998388,1.5788029925187033,2.0589417280642999,1.2698976394401504,1.318094321462945,1.6319652986319653,2.6386554621848739,1.7439446366782008,1.871559633027523,null,"A33",null,0.90113505510774794,0.80457312057904262,0.53503184713375795,0.43312101910828027,0.72020515589148337,0.64171953030098527,null,"A33","2.801-3.30",null,63]
["tr. factors","TrF-R3","R33",90,3160,2823,2568,473,241,208,3971,3100,3060,null,"R33",null,0.14968354430379746,8.5370173574211825E-2,8.0996884735202487E-2,0.11911357340720222,7.7741935483870969E-2,6.7973856209150321E-2,0.7957693276252833,0.91064516129032258,0.83921568627450982,null,"R33",null,1.6175152749490835,1.6145833333333333,2,1.2772837510105093,1.3513642891335567,1.6493256262042388,2.7341040462427744,1.7985074626865671,2,null,"R33",null,0.89335443037974682,0.81265822784810127,0.5095137420718816,0.43974630021141647,0.70301003344481605,0.6488294314381271,null,"R33","2.801-3.30",null,71]
["nuclease","Nuc-R3","N33",20,824,732,673,221,108,97,1128,907,922,null,"N33",null,0.26820388349514562,0.14754098360655737,0.14413075780089152,0.19592198581560283,0.11907386990077178,0.1052060737527115,0.73049645390070927,0.80705622932745313,0.72993492407809113,null,"N33",null,1.5263870094722598,1.5116666666666667,2.0626398210290828,1.2618683001531394,1.304812834224599,1.6699751861042185,2.6,1.588235294117647,1.94,null,"N33",null,0.88834951456310685,0.81674757281553401,0.48868778280542985,0.43891402714932126,0.7127307146237577,0.66256507335541881,null,"N33","2.801-3.30",null,83]
["polymerase","Pol-R3","P33",22,582,543,446,159,88,56,847,685,616,null,"P33",null,0.27319587628865977,0.16206261510128914,0.12556053811659193,0.18772136953955135,0.12846715328467154,9.0909090909090912E-2,0.68713105076741443,0.79270072992700735,0.72402597402597402,null,"P33",null,1.6640471512770139,1.4891304347826086,2.0881355932203389,1.279120879120879,1.3021582733812949,1.5016835016835017,2.9444444444444446,1.8723404255319149,1.6,null,"P33",null,0.9329896907216495,0.76632302405498287,0.55345911949685533,0.3522012578616352,0.74842370744010089,0.58511979823455229,null,"P33","2.801-3.30",null,87]
[]
[]
[{"$nulls":4},"Various types of contacts in the minor groove (mig)",{"$nulls":11},"Contact-to-contact ratios",{"$nulls":23},"Polar contacts",null,"HOH contacts",null,"All+HOH ",{"$nulls":5},1]
["minor groove",null,"mig","PDB","Contacts Polar",null,null,"Contacts HOH",null,null,"Contacts vdW",null,null,null,"mG",null,"HOH/Polar",null,null,"HOH/vdW",null,null,"polar/vdW",null,null,null,"mG",null,"Contacts vdW",null,null,"Contacts Polar",null,null,"Contacts HOH",null,null,null,"mG",null,"assig aa/all","assig nt/all","assig aa/all","assig nt/all","assig aa/all","assig nt/all",null,"minor groove",null,null,2]
[{"$nulls":4},"all","aa","nt","all","aa","nt","all","aa","nt",null,null,null,"all","aa","nt","all","aa","nt","all","aa","nt",null,null,null,"all","aa","nt","all","aa","nt","all","aa","nt",{"$nulls":13},3]
["All 1018","Umb-R2","A98",525,1126,1002,1007,2287,1532,1172,2661,2142,2126,null,"A98",null,2.0310834813499112,1.5289421157684631,1.163853028798411,0.85945133408493046,0.71521942110177406,0.55126999059266224,0.42314919203307028,0.46778711484593838,0.47365945437441204,null,"A98",null,0.16610486891385767,0.16112531969309463,0.22019678922837907,6.6282081469272433E-2,6.7388526464456255E-2,0.10030879569678255,0.19840374772273792,0.17498572244431754,0.19894754710575455,null,"A98",null,0.88987566607460034,0.89431616341030196,0.66987319632706599,0.51246174027109748,0.7065908330545333,0.64419538307126134,null,"A98","1.901-2.80",null,114]
["tr. factors","TrF-R2","R98",170,376,319,329,525,321,267,913,742,742,null,"R98",null,1.3962765957446808,1.0062695924764891,0.81155015197568392,0.5750273822562979,0.43261455525606468,0.35983827493261455,0.41182913472070098,0.42991913746630728,0.44339622641509435,null,"R98",null,0.14962307440183548,0.15251798561151078,0.18818158762363682,5.7748425741053599E-2,5.7025384340364679E-2,8.1114398422090728E-2,0.11001676445934619,9.2560553633217996E-2,0.10774818401937046,null,"R98",null,0.84840425531914898,0.875,0.61142857142857143,0.50857142857142856,0.68373663477771529,0.66516601012943166,null,"R98","1.901-2.80",null,122]
["nuclease","Nuc-R2","N98",89,178,163,165,496,333,269,316,278,269,null,"N98",null,2.7865168539325844,2.0429447852760738,1.6303030303030304,1.5696202531645569,1.1978417266187051,1,0.56329113924050633,0.58633093525179858,0.61338289962825276,null,"N98",null,0.10636149444631438,0.11416837782340862,0.16050119331742244,5.5382700684505293E-2,5.9359067734887111E-2,9.5596755504055622E-2,0.18486768542676107,0.16403940886699508,0.22435362802335279,null,"N98",null,0.9157303370786517,0.9269662921348315,0.6713709677419355,0.54233870967741937,0.71574642126789367,0.6492842535787321,null,"N98","1.901-2.80",null,134]
["polymerase","Pol-R2","P98",125,197,174,184,702,495,344,506,410,407,null,"P98",null,3.563451776649746,2.8448275862068964,1.8695652173913044,1.3873517786561265,1.2073170731707317,0.84520884520884521,0.38932806324110669,0.42439024390243901,0.45208845208845211,null,"P98",null,0.1702557200538358,0.15361558636193332,0.23458213256484151,6.3242375601926165E-2,6.1202954625395711E-2,9.6740273396424811E-2,0.37320574162679426,0.32673267326732675,0.3269961977186312,null,"P98",null,0.88324873096446699,0.93401015228426398,0.70512820512820518,0.49002849002849003,0.71037463976945248,0.62463976945244959,null,"P98","1.901-2.80",null,138]
[]
[{"$nulls":4},"Various types of contacts in the major groove (MAG)",{"$nulls":11},"Contact-to-contact ratios",{"$nulls":23},"Polar contacts",null,"HOH contacts",null,"All+HOH ",{"$nulls":5},1]
["Major groove",null,"MAG","PDB","Contacts Polar",null,null,"Contacts HOH",null,null,"Contacts vdW",null,null,null,"Mg",null,"HOH/Polar",null,null,"HOH/vdW",null,null,"polar/vdW",null,null,null,"Mg",null,"Contacts vdW",null,null,"Contacts Polar",null,null,"Contacts HOH",null,null,null,"Mg",null,"assig aa/all","assig nt/all","assig aa/all","assig nt/all","assig aa/all","assig nt/all",null,"Major groove",null,null,2]
[{"$nulls":4},"all","aa","nt","all","aa","nt","all","aa","nt",null,null,null,"all","aa","nt","all","aa","nt","all","aa","nt",null,null,null,"all","aa","nt","all","aa","nt","all","aa","nt",{"$nulls":13},3]
["All 1018","Umb-R2","A98",586,2943,2636,2780,4467,2935,2298,6270,4815,5082,null,"A98",null,1.5178389398572885,1.1134294385432473,0.82661870503597124,0.71244019138755976,0.60955347871235721,0.45218417945690675,0.46937799043062201,0.54745586708203531,0.54702872884691067,null,"A98",null,0.39138576779026218,0.36219347073867908,0.52635939927498709,0.17323993407110902,0.17728159257515635,0.27692001195338178,0.38752494144183219,0.33523700742432894,0.39008657273807501,null,"A98",null,0.89568467550118924,0.9446143391097519,0.65704051936422658,0.51443922095366013,0.6527540959300171,0.67195492623619246,null,"A98","1.901-2.80",null,166]
["tr. factors","TrF-R2","R98",250,1483,1298,1398,2479,1563,1271,2750,2063,2297,null,"R98",null,1.6716115981119353,1.2041602465331278,0.90915593705293274,0.90145454545454551,0.75763451284537087,0.55333043099695256,0.53927272727272724,0.6291808046534173,0.60861993905093603,null,"R98",null,0.45067191084890201,0.42404933196300104,0.58255135683489734,0.2277683919520811,0.23203432248838041,0.34467455621301774,0.5194886839899413,0.45069204152249137,0.51291364003228412,null,"R98",null,0.87525286581254214,0.94268374915711395,0.63049616780960061,0.51270673658733357,0.61148904006046867,0.68148148148148147,null,"R98","1.901-2.80",null,174]
["nuclease","Nuc-R2","N98",86,841,757,785,946,650,506,1638,1252,1297,null,"N98",null,1.1248513674197385,0.85865257595772793,0.64458598726114646,0.57753357753357748,0.51916932907348246,0.39013107170393213,0.51343101343101338,0.60463258785942497,0.60524286815728601,null,"N98",null,0.55132951868057889,0.51416837782340863,0.7738663484486874,0.26166770379589299,0.27567370721048801,0.45480880648899191,0.35259038389862096,0.32019704433497537,0.42201834862385323,null,"N98",null,0.9001189060642093,0.93341260404280624,0.68710359408033828,0.53488372093023251,0.66637063351095327,0.66577856719952633,null,"N98","1.901-2.80",null,186]
["polymerase","Pol-R2","P98",111,166,163,164,319,254,173,627,498,481,null,"P98",null,1.9216867469879517,1.5582822085889572,1.0548780487804879,0.50877192982456143,0.51004016064257029,0.35966735966735969,0.26475279106858052,0.32730923694779118,0.34095634095634098,null,"P98",null,0.21096904441453568,0.1865867366054702,0.27723342939481266,5.3290529695024076E-2,5.7333802321491385E-2,8.6225026288117776E-2,0.16959064327485379,0.16765676567656765,0.1644486692015209,null,"P98",null,0.98192771084337349,0.98795180722891562,0.79623824451410663,0.54231974921630099,0.76093023255813952,0.68744186046511624,null,"P98","1.901-2.80",null,190]
[]
[{"$nulls":4},"Various types of contacts to phosphate (PH)",{"$nulls":11},"Contact-to-contact ratios",{"$nulls":23},"Polar contacts",null,"HOH contacts",null,"All+HOH ",{"$nulls":5},1]
["Phosphates",null,"PH","PDB","Contacts Polar",null,null,"Contacts HOH",null,null,"Contacts vdW",null,null,null,"Ph-",null,"HOH/Polar",null,null,"HOH/vdW",null,null,"polar/vdW",null,null,null,"Ph-",null,"Contacts vdW",null,null,"Contacts Polar",null,null,"Contacts HOH",null,null,null,"Ph-",null,"assig aa/all","assig nt/all","assig aa/all","assig nt/all","assig aa/all","assig nt/all",null,"Phosphates",null,null,2]
[{"$nulls":4},"all","aa","nt","all","aa","nt","all","aa","nt",null,null,null,"all","aa","nt","all","aa","nt","all","aa","nt",null,null,null,"all","aa","nt","all","aa","nt","all","aa","nt",{"$nulls":13},3]
["All 1018","Umb-R2","A98",636,15653,14720,11538,13384,10231,5719,10054,9435,7542,null,"A98",null,0.85504376157924999,0.69504076086956523,0.49566649332639973,1.331211458126119,1.0843667196608373,0.7582869265446831,1.5568927789934355,1.5601483836777954,1.5298329355608591,null,"A98",null,0.62759051186017478,0.70971867007672629,0.78114966338684622,0.92141511655286079,0.98997915125428748,1.1493176611216256,1.1611000260258524,1.1685893774985723,0.97080291970802923,null,"A98",null,0.9403948124960072,0.73711109691432952,0.76442020322773463,0.42730125523012552,0.80887656033287103,0.46526289244735847,null,"A98","1.901-2.80",null,218]
["tr. factors","TrF-R2","R98",255,5682,5275,4400,5963,4676,2389,3552,3314,2726,null,"R98",null,1.0494544174586413,0.88644549763033176,0.54295454545454547,1.6787725225225225,1.4109837054918528,0.87637564196625095,1.5996621621621621,1.5917320458660229,1.6140865737344094,null,"R98",null,0.58210422812192719,0.68119218910585821,0.69135176261729647,0.87267700814007065,0.94297461565963536,1.0848126232741617,1.2495808885163453,1.348327566320646,0.9640839386602098,null,"R98",null,0.92837029215065114,0.77437521999296022,0.78416904242830787,0.40063726312258929,0.79739282703158443,0.45833063103962646,null,"R98","1.901-2.80",null,226]
["nuclease","Nuc-R2","N98",101,2436,2317,1904,2894,2164,1270,1498,1446,1190,null,"N98",null,1.1880131362889983,0.93396633577902455,0.66701680672268904,1.9319092122830441,1.4965421853388658,1.0672268907563025,1.6261682242990654,1.6023513139695713,1.6,null,"N98",null,0.50420733759676872,0.59383983572895283,0.71002386634844872,0.75793403858120723,0.84377276037873272,1.1031286210892237,1.0786433097279164,1.0660098522167487,1.0592160133444537,null,"N98",null,0.95114942528735635,0.7816091954022989,0.74775397373876984,0.4388389771941949,0.80168042879907286,0.46544980443285527,null,"N98","1.901-2.80",null,238]
["polymerase","Pol-R2","P98",133,3463,3302,2361,2076,1502,963,2386,2219,1696,null,"P98",null,0.59948021946289343,0.45487583282858873,0.4078780177890724,0.87007544006705784,0.67688147814330779,0.56780660377358494,1.4513830678960604,1.4880576836412798,1.3920990566037736,null,"P98",null,0.80282637954239566,0.83139752716373172,0.97752161383285308,1.111717495987159,1.1614491734083714,1.2413249211356467,1.1036682615629985,0.99141914191419145,0.91539923954372626,null,"P98",null,0.95350851862546926,0.68177880450476469,0.72350674373795765,0.4638728323699422,0.81916614810205357,0.46571250777846918,null,"P98","1.901-2.80",null,242]
[]
["Group of structures","Abbreviation as in the MS","Abbreviation in this table","Number of PDB structures","number of all contacts","number of contacts formed by amino acids","number of contacts formed by nucleotide","number of all contacts","number of contacts formed by amino acids","number of contacts formed by nucleotide","number of all contacts","number of contacts formed by amino acids","number of contacts formed by nucleotide",null,"Abbreviation in this table"]

{"sheet":"Table S5","index":4,"n_rows":14,"n_cols":9,"rows_kept":14,"cut":false,"hidden":false,"merged":[[3,3,3,5],[3,6,3,8],[1,0,1,8],[3,0,3,2]]}
[]
["Table S5. Ratios of polar and water-mediated contacts to the minor groove (mig), major groove (MAG), and phosphate (PH) atoms from specified types of proteins and resolution bins (R1: structures with resolution better than 1.90 Å, R2: structures with resolution between 1.9 and 2.80 Å). "]
[]
["Structure group",null,null,"polar",null,null,"HOH"]
["Structure","abbrev.","res. bin","mig","MAG","PH","mig","MAG","PH"]
["enzyme","Enz-R1","R1",1,2,10,1,1,5]
["enzyme","Enz-R2","R2",1,2,14,1,1,5]
["regulation","TrF-R1","R1",1,4,12,1,4,14]
["regulation","TrF-R2","R2",1,4,17,1,5,15]
["nuclease","Nuc-R1","R1",1,4,14,1,2,7]
["nuclease","Nuc-R2","R2",1,5,14,1,2,6]
["polymerase","Pol-R1","R1",6,1,57,7,1,10]
["polymerase","Pol-R2","R2",1,1,20,2,1,6]
["structural","Str-R2","R2",1,1,10,1,1,3]