The 5-Fluorouracil RNA Expression Viewer (5-FUR) Facilitates Interpreting the Effects of Drug Treatment and RRP6 Deletion on the Transcriptional Landscape in Yeast - Inserm - Institut national de la santé et de la recherche médicale
Article Dans Une Revue Yeast Année : 2024

The 5-Fluorouracil RNA Expression Viewer (5-FUR) Facilitates Interpreting the Effects of Drug Treatment and RRP6 Deletion on the Transcriptional Landscape in Yeast

Résumé

Saccharomyces cerevisiae is an excellent model to study the effect of external cues on cell division and stress response. 5‐Fluorocuracil (5‐FU) has been used to treat solid tumors since several decades. The drug was initially designed to interfere with DNA replication but was later found to exert its antiproliferative effect also via RNA‐dependent processes. Since 5‐FU inhibits the activity of the 3′−5′‐exoribonuclease Rrp6 in yeast and mammals, earlier work has compared the effect of 5‐FU treatment and RRP6 deletion at the transcriptome level in diploid synchronized yeast cells. To facilitate interpreting the expression data we have developed an improved 5‐Fluorouracil RNA (5‐FUR) expression viewer. Users can access information via genome coordinates and systematic or standard names for mRNAs and Xrn1‐dependent‐, stable‐, cryptic‐, and meiotic unannotated transcripts (XUTs, SUTs, CUTs, and MUTs). Normalized log2‐transformed or linear data can be displayed as filled diagrams, line graphs or color‐coded heatmaps. The expression data are useful for researchers interested in processes such as cell cycle regulation, mitotic repression of meiotic genes, the effect of 5‐FU treatment and Rrp6 deficiency on the transcriptome and expression profiles of sense/antisense loci that encode overlapping transcripts. The viewer is accessible at http://5fur.genouest.org.
Fichier principal
Vignette du fichier
Yeast - 2024 - Szachnowski - The 5‐Fluorouracil RNA Expression Viewer 5‐FUR Facilitates Interpreting the Effects of Drug.pdf (2.29 Mo) Télécharger le fichier
yea3982-sup-0001-supmat.pdf (4.36 Ko) Télécharger le fichier
yea3982-sup-0002-figure_s1.pdf (135.46 Ko) Télécharger le fichier
yea3982-sup-0003-figure_s2.pdf (148.86 Ko) Télécharger le fichier
Origine Publication financée par une institution

Dates et versions

hal-04718291 , version 1 (02-10-2024)

Licence

Identifiants

Citer

Ugo Szachnowski, Oliver Sallou, Matéo Boudet, Anthony Bretaudeau, Maxime Wéry, et al.. The 5-Fluorouracil RNA Expression Viewer (5-FUR) Facilitates Interpreting the Effects of Drug Treatment and RRP6 Deletion on the Transcriptional Landscape in Yeast. Yeast, 2024, Online ahead of print. ⟨10.1002/yea.3982⟩. ⟨hal-04718291⟩
99 Consultations
13 Téléchargements

Altmetric

Partager

More